DK946036
Clone id YMU02A01NGRL0011_D22
Library
Length 260
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_D22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGGGACAATGCACCTATGGCTTTCATT
GAGCTTGTTTAACTGAACGAATTCATTGCTCTGCTGCTTCCTTGTCTCACAAAGTTATTT
TCTGTATTTAGCAAGCCAGACATCCAAAGAGCTCTGGAGAGAATTTTGTGCATGCAGAAG
TAATCTCGAGTGAATACATTCTACAACATGTTCTCATAGAGGTTGTTATGGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q3JEB6
Definition sp|Q3JEB6|SYD_NITOC Aspartyl-tRNA synthetase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Align length 21
Score (bit) 28.9
E-value 8.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946036|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_D22, 5'
(196 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3JEB6|SYD_NITOC Aspartyl-tRNA synthetase OS=Nitrosococcus oc... 29 8.4

>sp|Q3JEB6|SYD_NITOC Aspartyl-tRNA synthetase OS=Nitrosococcus
oceani (strain ATCC 19707 / NCIMB 11848) GN=aspS PE=3
SV=1
Length = 595

Score = 28.9 bits (63), Expect = 8.4
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1

Query: 109 PKSSGENFVHAEVISSEYILQ 171
P+ S E+F HAE I SEY+LQ
Sbjct: 51 PEYSPESFRHAEQIRSEYVLQ 71


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946036|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_D22, 5'
(196 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******