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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946052
Clone id YMU02A01NGRL0011_E17
Library
Length 438
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_E17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGGTCGTGCATCCGCACAATG
GCCATACGGATGATGATTGCGCCTTCGTGGCCTTCTGCTACGCTCTGCTCGGCTCCTGCC
TCCCGAGTTCCTCTCCGCTGCTTTGCTACTGCGCCGCGCATTTATGCCTCTGTATTTTCG
CCACCCTCACAACAACAGCGGCCGCCAGAGCCTTCACTTGCATCTGGACATTGGGAGGAT
TTTGCAAGGCAAGTTTCAGGAGAGTGGGATGGTTATGGGGCTGAATTCACTGATAGTGGA
GAACCTCGTGAACTTCCTTCTGCTGTAGTTCCAGAAGCCTTCAGGGAATGGGAAGTTCAA
CTTTATGATTGGCAGACACAGTGCCCCACTATTGCGAAGGAGAACATTTATTACAGGCTG
ACACGGCTGTTGCCAACT
■■Homology search results ■■ -
sp_hit_id Q96RR1
Definition sp|Q96RR1|PEO1_HUMAN Twinkle protein, mitochondrial OS=Homo sapiens
Align length 61
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946052|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_E17, 5'
         (398 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96RR1|PEO1_HUMAN Twinkle protein, mitochondrial OS=Homo sapi...    34   0.20 
sp|P0AEX2|K1PF_SHIFL 1-phosphofructokinase OS=Shigella flexneri ...    31   1.7  
sp|P0AEW9|K1PF_ECOLI 1-phosphofructokinase OS=Escherichia coli (...    31   1.7  
sp|P0AEX0|K1PF_ECOL6 1-phosphofructokinase OS=Escherichia coli O...    31   1.7  
sp|P0AEX1|K1PF_ECO57 1-phosphofructokinase OS=Escherichia coli O...    31   1.7  
sp|Q9Z8J6|Y347_CHLPN Probable metal transport system membrane pr...    31   2.2  
sp|Q2TBM9|SRAC1_BOVIN Protein SERAC1 OS=Bos taurus GN=SERAC1 PE=...    29   6.4  
sp|Q8JUX6|POLN_CHIKS Non-structural polyprotein OS=Chikungunya v...    29   8.3  

>sp|Q96RR1|PEO1_HUMAN Twinkle protein, mitochondrial OS=Homo sapiens
           GN=PEO1 PE=1 SV=1
          Length = 684

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
 Frame = +3

Query: 177 LASGHWEDFARQVSGEWDG--------YGAEFTDSGEPRELPSAVVP--EAFREWEVQLY 326
           LA G WEDF   V G  DG           EF DS E R + +  +P  E   + EVQL 
Sbjct: 117 LAEGSWEDFQASVEGRGDGAREGFLLSKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLA 176

Query: 327 D 329
           D
Sbjct: 177 D 177


>sp|P0AEX2|K1PF_SHIFL 1-phosphofructokinase OS=Shigella flexneri
           GN=fruK PE=3 SV=1
          Length = 312

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTI 353
           WE F    S  W G       SG    LPS V PEAF +W  +L   ++QCP I
Sbjct: 118 WERFVTD-SLSWLGQFDMVCVSGS---LPSGVSPEAFTDWMTRL---RSQCPCI 164


>sp|P0AEW9|K1PF_ECOLI 1-phosphofructokinase OS=Escherichia coli
           (strain K12) GN=fruK PE=3 SV=1
          Length = 312

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTI 353
           WE F    S  W G       SG    LPS V PEAF +W  +L   ++QCP I
Sbjct: 118 WERFVTD-SLSWLGQFDMVCVSGS---LPSGVSPEAFTDWMTRL---RSQCPCI 164


>sp|P0AEX0|K1PF_ECOL6 1-phosphofructokinase OS=Escherichia coli O6
           GN=fruK PE=3 SV=1
          Length = 312

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTI 353
           WE F    S  W G       SG    LPS V PEAF +W  +L   ++QCP I
Sbjct: 118 WERFVTD-SLSWLGQFDMVCVSGS---LPSGVSPEAFTDWMTRL---RSQCPCI 164


>sp|P0AEX1|K1PF_ECO57 1-phosphofructokinase OS=Escherichia coli
           O157:H7 GN=fruK PE=3 SV=1
          Length = 312

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTI 353
           WE F    S  W G       SG    LPS V PEAF +W  +L   ++QCP I
Sbjct: 118 WERFVTD-SLSWLGQFDMVCVSGS---LPSGVSPEAFTDWMTRL---RSQCPCI 164


>sp|Q9Z8J6|Y347_CHLPN Probable metal transport system membrane
           protein CPn_0347/CP_0413/CPj0347/CpB0354 OS=Chlamydia
           pneumoniae GN=CPn_0347 PE=3 SV=1
          Length = 448

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 291 PEAFREWEVQLYDWQTQCPTIAKENIYYRLTR 386
           P+ F  W VQ+ +W+     + KE  YYRLT+
Sbjct: 347 PKPFPRWRVQILEWRGY---VKKEQDYYRLTK 375


>sp|Q2TBM9|SRAC1_BOVIN Protein SERAC1 OS=Bos taurus GN=SERAC1 PE=2
           SV=1
          Length = 654

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 195 EDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTIAKENIYY 374
           +D   +VS +   Y   +  S   R+ P+  +     E++  L DW+ +CPT  +++I +
Sbjct: 417 QDLTEKVSEDETKYTTCWPKSWLARDCPALRIISV--EYDTSLSDWRARCPT-ERKSIAF 473

Query: 375 RLTRLL 392
           R   LL
Sbjct: 474 RSNELL 479


>sp|Q8JUX6|POLN_CHIKS Non-structural polyprotein OS=Chikungunya virus
            (strain S27-African prototype) PE=2 SV=1
          Length = 2474

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 329  IIKLNFPFPEGFWNYSRRKFTRFSTISEFSPIT--IPLS*NLP 207
            I++  +PF +G WN +++       I +F+P T  IP +  LP
Sbjct: 1102 ILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPANRRLP 1144
tr_hit_id A7P8S3
Definition tr|A7P8S3|A7P8S3_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera
Align length 72
Score (bit) 105.0
E-value 9.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946052|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_E17, 5'
         (398 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P8S3|A7P8S3_VITVI Chromosome chr3 scaffold_8, whole genome ...   105   9e-22
tr|Q9SZM2|Q9SZM2_ARATH Putative uncharacterized protein F20D10.3...   105   1e-21
tr|Q8RXW1|Q8RXW1_ARATH Putative uncharacterized protein At4g3822...   105   1e-21
tr|Q8LAA8|Q8LAA8_ARATH Putative uncharacterized protein (Putativ...   105   1e-21
tr|Q3E9N9|Q3E9N9_ARATH Uncharacterized protein At4g38225.2 OS=Ar...   105   1e-21
tr|Q9SNK8|Q9SNK8_ORYSJ Similar to Arabidopsis thaliana DNA chrom...   102   9e-21
tr|Q10SA9|Q10SA9_ORYSJ cDNA clone:001-021-A07, full insert seque...   102   9e-21
tr|Q0DVI1|Q0DVI1_ORYSJ Os03g0128800 protein OS=Oryza sativa subs...   102   9e-21
tr|B8AMD3|B8AMD3_ORYSI Putative uncharacterized protein OS=Oryza...   102   9e-21
tr|A9SCE3|A9SCE3_PHYPA Predicted protein (Fragment) OS=Physcomit...    98   2e-19
tr|A9RG34|A9RG34_PHYPA Predicted protein OS=Physcomitrella paten...    87   5e-16
tr|A4S9S2|A4S9S2_OSTLU Predicted protein OS=Ostreococcus lucimar...    70   4e-11
tr|A8IYP0|A8IYP0_CHLRE Predicted protein OS=Chlamydomonas reinha...    61   2e-08
tr|Q00SR9|Q00SR9_OSTTA Aminoacylase ACY1 and related metalloexop...    58   2e-07
tr|A4S832|A4S832_OSTLU Predicted protein OS=Ostreococcus lucimar...    42   0.020
tr|Q4TD31|Q4TD31_TETNG Chromosome undetermined SCAF6557, whole g...    35   2.4  
tr|Q4SFF1|Q4SFF1_TETNG Chromosome 1 SCAF14603, whole genome shot...    35   2.4  
tr|B2CQL2|B2CQL2_HUMAN Chromosome 10 open reading frame 2 OS=Hom...    34   3.2  
tr|B0RAY3|B0RAY3_CLAMS Sensor protein OS=Clavibacter michiganens...    34   4.1  
tr|A5CTX1|A5CTX1_CLAM3 Sensor protein OS=Clavibacter michiganens...    34   4.1  
tr|B5XP49|B5XP49_KLEP3 1-phosphofructokinase OS=Klebsiella pneum...    33   5.4  
tr|A6TBP6|A6TBP6_KLEP7 1-phosphofructokinase OS=Klebsiella pneum...    33   5.4  
tr|A2QN84|A2QN84_ASPNC Putative uncharacterized protein OS=Asper...    33   7.0  
tr|A4WCJ7|A4WCJ7_ENT38 Fructose-1-phosphate kinase OS=Enterobact...    33   9.2  
tr|Q29L62|Q29L62_DROPS GA18654 OS=Drosophila pseudoobscura pseud...    33   9.2  
tr|B4H8W2|B4H8W2_DROPE GL24734 OS=Drosophila persimilis GN=GL247...    33   9.2  

>tr|A7P8S3|A7P8S3_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036286001
           PE=4 SV=1
          Length = 324

 Score =  105 bits (263), Expect = 9e-22
 Identities = 45/72 (62%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTIAK---E 362
           W +FAR VSGEWDGYGA+F+  G+P ELP  VVPEA+REWEV+++DWQTQCPT+A+    
Sbjct: 35  WPEFARNVSGEWDGYGADFSSEGKPIELPEFVVPEAYREWEVKVFDWQTQCPTLAEPEDH 94

Query: 363 NIYYRLTRLLPT 398
            + Y+L +LLPT
Sbjct: 95  TVAYKLIKLLPT 106


>tr|Q9SZM2|Q9SZM2_ARATH Putative uncharacterized protein F20D10.340
           (Putative uncharacterized protein AT4g38220)
           OS=Arabidopsis thaliana GN=F20D10.340 PE=2 SV=1
          Length = 753

 Score =  105 bits (262), Expect = 1e-21
 Identities = 45/72 (62%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTIAKEN-- 365
           W +FA+ VSGEWDG+GA+FT  G+P ELP +VVPEAFREWEV+++DWQTQCPT+A+ N  
Sbjct: 453 WSEFAQNVSGEWDGFGADFTCEGQPLELPESVVPEAFREWEVKVFDWQTQCPTLAQPNSL 512

Query: 366 -IYYRLTRLLPT 398
              Y+  +LLPT
Sbjct: 513 SFLYKSIKLLPT 524


>tr|Q8RXW1|Q8RXW1_ARATH Putative uncharacterized protein At4g38225
           OS=Arabidopsis thaliana GN=At4g38225 PE=2 SV=2
          Length = 363

 Score =  105 bits (262), Expect = 1e-21
 Identities = 45/72 (62%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTIAKEN-- 365
           W +FA+ VSGEWDG+GA+FT  G+P ELP +VVPEAFREWEV+++DWQTQCPT+A+ N  
Sbjct: 74  WSEFAQNVSGEWDGFGADFTCEGQPLELPESVVPEAFREWEVKVFDWQTQCPTLAQPNSL 133

Query: 366 -IYYRLTRLLPT 398
              Y+  +LLPT
Sbjct: 134 SFLYKSIKLLPT 145


>tr|Q8LAA8|Q8LAA8_ARATH Putative uncharacterized protein (Putative
           uncharacterized protein At4g38225) OS=Arabidopsis
           thaliana GN=At4g38225 PE=2 SV=1
          Length = 363

 Score =  105 bits (262), Expect = 1e-21
 Identities = 45/72 (62%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTIAKEN-- 365
           W +FA+ VSGEWDG+GA+FT  G+P ELP +VVPEAFREWEV+++DWQTQCPT+A+ N  
Sbjct: 74  WSEFAQNVSGEWDGFGADFTCEGQPLELPESVVPEAFREWEVKVFDWQTQCPTLAQPNSL 133

Query: 366 -IYYRLTRLLPT 398
              Y+  +LLPT
Sbjct: 134 SFLYKSIKLLPT 145


>tr|Q3E9N9|Q3E9N9_ARATH Uncharacterized protein At4g38225.2
           OS=Arabidopsis thaliana GN=At4g38225 PE=4 SV=1
          Length = 308

 Score =  105 bits (262), Expect = 1e-21
 Identities = 45/72 (62%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTIAKEN-- 365
           W +FA+ VSGEWDG+GA+FT  G+P ELP +VVPEAFREWEV+++DWQTQCPT+A+ N  
Sbjct: 74  WSEFAQNVSGEWDGFGADFTCEGQPLELPESVVPEAFREWEVKVFDWQTQCPTLAQPNSL 133

Query: 366 -IYYRLTRLLPT 398
              Y+  +LLPT
Sbjct: 134 SFLYKSIKLLPT 145


>tr|Q9SNK8|Q9SNK8_ORYSJ Similar to Arabidopsis thaliana DNA
           chromosome 4 (Putative uncharacterized protein)
           (Putative uncharacterized protein OJ1528D07.3) OS=Oryza
           sativa subsp. japonica GN=OJ1528D07.3 PE=4 SV=1
          Length = 349

 Score =  102 bits (254), Expect = 9e-21
 Identities = 45/73 (61%), Positives = 58/73 (79%), Gaps = 4/73 (5%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTIAKE--- 362
           W +FA +VSGEWDG+GAEFT +G+  ELP  VVPEA+R+W VQ++DWQTQCPT+A     
Sbjct: 72  WAEFASRVSGEWDGFGAEFTAAGDAVELPENVVPEAYRDWGVQVFDWQTQCPTLADPAAP 131

Query: 363 -NIYYRLTRLLPT 398
            +++YRL RLLPT
Sbjct: 132 CDLHYRLVRLLPT 144


>tr|Q10SA9|Q10SA9_ORYSJ cDNA clone:001-021-A07, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os03g03670 PE=2
           SV=1
          Length = 364

 Score =  102 bits (254), Expect = 9e-21
 Identities = 45/73 (61%), Positives = 58/73 (79%), Gaps = 4/73 (5%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTIAKE--- 362
           W +FA +VSGEWDG+GAEFT +G+  ELP  VVPEA+R+W VQ++DWQTQCPT+A     
Sbjct: 72  WAEFASRVSGEWDGFGAEFTAAGDAVELPENVVPEAYRDWGVQVFDWQTQCPTLADPAAP 131

Query: 363 -NIYYRLTRLLPT 398
            +++YRL RLLPT
Sbjct: 132 CDLHYRLVRLLPT 144


>tr|Q0DVI1|Q0DVI1_ORYSJ Os03g0128800 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0128800 PE=4 SV=1
          Length = 378

 Score =  102 bits (254), Expect = 9e-21
 Identities = 45/73 (61%), Positives = 58/73 (79%), Gaps = 4/73 (5%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTIAKE--- 362
           W +FA +VSGEWDG+GAEFT +G+  ELP  VVPEA+R+W VQ++DWQTQCPT+A     
Sbjct: 72  WAEFASRVSGEWDGFGAEFTAAGDAVELPENVVPEAYRDWGVQVFDWQTQCPTLADPAAP 131

Query: 363 -NIYYRLTRLLPT 398
            +++YRL RLLPT
Sbjct: 132 CDLHYRLVRLLPT 144


>tr|B8AMD3|B8AMD3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09830 PE=4 SV=1
          Length = 364

 Score =  102 bits (254), Expect = 9e-21
 Identities = 45/73 (61%), Positives = 58/73 (79%), Gaps = 4/73 (5%)
 Frame = +3

Query: 192 WEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTIAKE--- 362
           W +FA +VSGEWDG+GAEFT +G+  ELP  VVPEA+R+W VQ++DWQTQCPT+A     
Sbjct: 72  WAEFASRVSGEWDGFGAEFTAAGDAVELPENVVPEAYRDWGVQVFDWQTQCPTLADPAAP 131

Query: 363 -NIYYRLTRLLPT 398
            +++YRL RLLPT
Sbjct: 132 CDLHYRLVRLLPT 144


>tr|A9SCE3|A9SCE3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_127569 PE=4 SV=1
          Length = 209

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 43/73 (58%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
 Frame = +3

Query: 189 HWEDFARQVSGEWDGYGAEFTDSGEPRELPSAVVPEAFREWEVQLYDWQTQCPTIA---K 359
           +WE FA QVSGEWDGY AEF  +GEP +LPS +VP+AFREW V+++DWQTQ PT+A   +
Sbjct: 9   NWEAFAAQVSGEWDGYSAEFNFAGEPIQLPSNIVPDAFREWGVEIHDWQTQAPTLAHPEE 68

Query: 360 ENIYYRLTRLLPT 398
            +++Y++ RL PT
Sbjct: 69  GHLWYKVIRLHPT 81