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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946063
Clone id YMU02A01NGRL0011_F07
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_F07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCCTATGAACGTTGATAAAATCCCCGCATCGCAGGTGGAGTAGCGCGTCGAGGTGGCGGA
GGATTCGACGTCGAAGTTCAAACGACAAAAGGCTTGCGGTGGATACCTAGGCACCCAGAG
ACGAAGAAGGGCGTGGCAAACGACGAAATGCTTCGGGGAGCCGAAAATAGGTATAGATCC
GGAGATTCCCGAATAGGTTAACCTTCCAAACTGCCTGCTGAATTCAGAAGCAGACAAGAG
ACAACCCGGCGAACTGAAACATCTTAGTAGCCGGAGGAGGAAAAAGCAAAAGCGATTCCC
CTAGTAACGGCGAGTGAAACGGGAAGAGCCTAAACCGTGAAGACGGGGTTGTGGGAGAGT
GATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGATGGTGATAGT
CCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGCACGCAAAA
TCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGACCGATAGC
GAAGCAGTACCGTG
■■Homology search results ■■ -
sp_hit_id Q9LSL6
Definition sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana
Align length 28
Score (bit) 32.7
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946063|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_F07, 5'
         (554 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidop...    33   1.2  
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   7.9  

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis
           thaliana GN=DOF5.7 PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 319 FHSPLLGESLLLFPPPATKMFQFAGLSL 236
           F S ++ +S   FPPP T  FQ AGLSL
Sbjct: 115 FFSSIMEDSSKFFPPPTTMDFQLAGLSL 142


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +1

Query: 352 WESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 459
           +E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 115 FECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154
tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 54
Score (bit) 89.0
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946063|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_F07, 5'
         (554 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    89   2e-16
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   2e-16
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   2e-16
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   2e-16
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    52   3e-16
tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geoba...    80   3e-16
tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a...    84   7e-15
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    75   3e-12
tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1            59   1e-11
tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragmen...    71   4e-11
tr|A6N034|A6N034_ORYSI Putative uncharacterized protein (Fragmen...    71   4e-11
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    70   8e-11
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    64   4e-09
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    63   9e-09
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            58   3e-07
tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein OS=Helio...    49   2e-06
tr|B7RDP9|B7RDP9_9THEM Putative uncharacterized protein OS=Marin...    55   3e-06
tr|Q6YSQ6|Q6YSQ6_BRANA Putative uncharacterized protein orf108a ...    54   6e-06
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    52   2e-05
tr|A7QXA4|A7QXA4_VITVI Chromosome undetermined scaffold_217, who...    50   3e-05
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    50   6e-05
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    50   6e-05
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    50   6e-05
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    49   1e-04
tr|A6MZ94|A6MZ94_ORYSI Putative uncharacterized protein (Fragmen...    49   1e-04
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    49   2e-04
tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche...    49   2e-04
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    48   4e-04
tr|B1SRT8|B1SRT8_9BACI Putative uncharacterized protein OS=Geoba...    35   0.001
tr|Q1MP77|Q1MP77_LAWIP Putative uncharacterized protein LI1146 O...    38   0.001

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +1

Query: 391 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 552
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +1

Query: 391 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 552
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +1

Query: 391 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 552
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +1

Query: 391 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 552
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 51.6 bits (122), Expect(3) = 3e-16
 Identities = 23/31 (74%), Positives = 24/31 (77%)
 Frame = -3

Query: 552 RYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 460
           RY FAI H  +FSL RWS LIHTGF VPHAT
Sbjct: 242 RYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272



 Score = 44.7 bits (104), Expect(3) = 3e-16
 Identities = 22/41 (53%), Positives = 25/41 (60%)
 Frame = -3

Query: 222 FSRQFGRLTYXXXXXXXXXXXXPKHFVVCHALLRLWVPRYP 100
           F++QF RLTY            PKHFV  +AL RLWVPRYP
Sbjct: 308 FTQQFERLTYSGISGSMLIFNSPKHFVAYYALSRLWVPRYP 348



 Score = 32.0 bits (71), Expect(3) = 3e-16
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -1

Query: 443 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFT 336
           L +L ATG SPS VQH             SHNP+FT
Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNTMLVLLSHNPIFT 309


>tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein
           OS=Geobacillus sp. Y412MC61 GN=GYMC61DRAFT_3653 PE=4
           SV=1
          Length = 177

 Score = 80.1 bits (196), Expect(2) = 3e-16
 Identities = 53/105 (50%), Positives = 61/105 (58%), Gaps = 7/105 (6%)
 Frame = -2

Query: 334 FRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*IQQAV------WKVNLFGNLRIY 173
           F LFPF SPLL ES LL  PP TKMFQF G +L    IQ  +      W V  FG+LRI 
Sbjct: 67  FGLFPFRSPLLRESRLLSSPPGTKMFQFPGCALHALWIQAWILPHYGQW-VPPFGHLRIN 125

Query: 172 TYFRLPEAFRRLPRPSSSLGA*VSTASLLSFE-LRRRILRHLDAL 41
              +LPEAFRRLPRPSS+  A  ST        LR R+L ++  L
Sbjct: 126 ACLQLPEAFRRLPRPSSAPSAKASTVRPFQLNLLRSRLLPYVTRL 170



 Score = 28.1 bits (61), Expect(2) = 3e-16
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 503 GPR*FTRDFACPMLLGLERELAVLPATGLSPS 408
           GP  F RD +CP +L +      +  TGLSPS
Sbjct: 4   GPPCFRRDSSCPAVLRIRSGGNEVSTTGLSPS 35


>tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a-ct
           OS=Zea mays GN=orf121-a-ct PE=4 SV=1
          Length = 121

 Score = 83.6 bits (205), Expect = 7e-15
 Identities = 38/49 (77%), Positives = 44/49 (89%)
 Frame = +1

Query: 73  EVQTTKGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPA 219
           EVQ  KGLRWIPRHPET+KGVA+DEMLRG EN++RSGDS+IG P +LPA
Sbjct: 58  EVQKRKGLRWIPRHPETRKGVASDEMLRGVENKHRSGDSQIGQPFELPA 106


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 35/47 (74%), Positives = 40/47 (85%)
 Frame = +1

Query: 412 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 552
           G+SPV+ S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47


>tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1
          Length = 124

 Score = 59.3 bits (142), Expect(2) = 1e-11
 Identities = 38/72 (52%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
 Frame = -2

Query: 337 RFRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*IQQAVWKVNLFGNLRIYTYFRL 158
           RFRL PF SPLL ESLLL  P ATKMFQFA LSL C  IQQ +  +   G       F  
Sbjct: 45  RFRLLPFRSPLLRESLLLSIPLATKMFQFARLSLACPWIQQQLKGLTYSGISGSMLIFNS 104

Query: 157 PE---AFRRLPR 131
           P+   A+  LPR
Sbjct: 105 PKHFVAYHALPR 116



 Score = 33.5 bits (75), Expect(2) = 1e-11
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = -1

Query: 467 MLLGLERELAVLPATGLSPSGVQ 399
           MLLGLER+  +L ATGLSPS VQ
Sbjct: 1   MLLGLERKPMMLSATGLSPSRVQ 23



 Score = 42.0 bits (97), Expect = 0.022
 Identities = 22/47 (46%), Positives = 24/47 (51%)
 Frame = -3

Query: 237 LSASEFSRQFGRLTYXXXXXXXXXXXXPKHFVVCHALLRLWVPRYPP 97
           L+     +Q   LTY            PKHFV  HAL RLWVPRYPP
Sbjct: 78  LACPWIQQQLKGLTYSGISGSMLIFNSPKHFVAYHALPRLWVPRYPP 124


>tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 59

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 32/44 (72%), Positives = 39/44 (88%)
 Frame = +1

Query: 88  KGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPA 219
           KGLRWIPR+PE +KGVA+DEMLRG E ++RSGDS+IG P +LPA
Sbjct: 1   KGLRWIPRYPEMRKGVASDEMLRGVEIKHRSGDSQIGQPFELPA 44