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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946080
Clone id YMU02A01NGRL0011_G08
Library
Length 212
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_G08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGAAGTCCTGGAAGAAAAGGG
GGGCTTACCTACTAAATATCGTGGCAGAAGGGATCTCCCAGAGACAAGAAGGGATGATAT
ATTGGAACGACAAGCAGGGAGGAGAAAGAATTGGGCAAAAATGATGAATAGAATAAATTG
AAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946080|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_G08, 5'
         (140 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q53N99
Definition tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subsp. japonica
Align length 42
Score (bit) 36.6
E-value 0.63
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946080|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_G08, 5'
         (140 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subs...    37   0.63 
tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.63 
tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.63 
tr|Q2QW32|Q2QW32_ORYSJ Os12g0210400 protein OS=Oryza sativa subs...    33   9.1  
tr|B8BNM4|B8BNM4_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.1  
tr|A3CFW6|A3CFW6_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.1  

>tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0245200 PE=4 SV=1
          Length = 897

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 135 YSIHHFCPILSPPCLSFQYIIPSCLWEIP-SATIFSR*APLF 13
           YS    CP L P CLS QY+ P+C   +P   T+  R  P F
Sbjct: 352 YSTQSICPGLPPTCLSDQYLSPNCTCAVPYMGTLHFRSPPFF 393


>tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35675 PE=4 SV=1
          Length = 954

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 135 YSIHHFCPILSPPCLSFQYIIPSCLWEIP-SATIFSR*APLF 13
           YS    CP L P CLS QY+ P+C   +P   T+  R  P F
Sbjct: 427 YSTQSICPGLPPTCLSDQYLSPNCTCAVPYMGTLHFRSPPFF 468


>tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032178 PE=4 SV=1
          Length = 893

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 135 YSIHHFCPILSPPCLSFQYIIPSCLWEIP-SATIFSR*APLF 13
           YS    CP L P CLS QY+ P+C   +P   T+  R  P F
Sbjct: 352 YSTQSICPGLPPTCLSDQYLSPNCTCAVPYMGTLHFRSPPFF 393


>tr|Q2QW32|Q2QW32_ORYSJ Os12g0210400 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0210400 PE=2 SV=1
          Length = 967

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 117 CPILSPPCLSFQYIIPSCLWEIP-SATIFSR 28
           CP L P CLS Q + P+C+  +P   T+F R
Sbjct: 423 CPALPPTCLSTQQLSPTCICSVPYRGTLFFR 453


>tr|B8BNM4|B8BNM4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37810 PE=4 SV=1
          Length = 953

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 117 CPILSPPCLSFQYIIPSCLWEIP-SATIFSR 28
           CP L P CLS Q + P+C+  +P   T+F R
Sbjct: 409 CPALPPTCLSTQQLSPTCICSVPYRGTLFFR 439


>tr|A3CFW6|A3CFW6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034188 PE=4 SV=1
          Length = 1065

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 117 CPILSPPCLSFQYIIPSCLWEIP-SATIFSR 28
           CP L P CLS Q + P+C+  +P   T+F R
Sbjct: 383 CPALPPTCLSTQQLSPTCICSVPYRGTLFFR 413