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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946082
Clone id YMU02A01NGRL0011_G10
Library
Length 492
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_G10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTGCATCACTATGATGGACCAAAATTTCGTTTGCAGCTTTCAGTTCCAGAGACTTTGGC
TCTTCTGGACCTTTTCACGGAGGCTGGTATGGTGTGAGCTAGCTGTATGTACAATGTTGG
TGGTTTTGGAGCTAGAGAGCTTCCTGTTCGACTTCTTACCTGGCCCATGCGGTGCGGTGC
GGCAGATCGGATAATGTAATGCATTTGGAAAATCATGCTTGACCAGTGGTGATAAATATT
GTGTTGTCGGTACTCCATACATGGGATGTTGTGTGCTTTCGAATGGGCCCAAATAAGTAG
GACCCCTTGCCAAGCCTTCATAAGGAAAGCTTGTCCTGTTTTGTGTAGGAGTAAAGTTTT
CGGCTTGTTACGATAAGAATGTAATAAGCCCTGTATGCAAGCGTGTGAAACAGAGGCTTG
TCCTTAAAGGGCTGCCTTTGTTGGTGATTAAAGGATACTATGGTTCTAGGTTTTCCCATG
TACATCCCTCGA
■■Homology search results ■■ -
sp_hit_id P37707
Definition sp|P37707|B2_DAUCA B2 protein OS=Daucus carota
Align length 27
Score (bit) 49.7
E-value 7.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946082|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_G10, 5'
         (492 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P37707|B2_DAUCA B2 protein OS=Daucus carota PE=2 SV=1               50   7e-06
sp|Q7P1I1|UNG_CHRVO Uracil-DNA glycosylase OS=Chromobacterium vi...    33   0.93 
sp|Q90WM5|DMRT3_FUGRU Doublesex- and mab-3-related transcription...    32   1.6  
sp|Q6XBJ3|ONEC2_MOUSE One cut domain family member 2 OS=Mus musc...    32   2.1  
sp|Q5AG31|MED14_CANAL Mediator of RNA polymerase II transcriptio...    31   2.7  
sp|Q5DU25|IQEC2_MOUSE IQ motif and SEC7 domain-containing protei...    31   3.5  
sp|Q5JU85|IQEC2_HUMAN IQ motif and SEC7 domain-containing protei...    31   3.5  
sp|Q8K9V2|ENGD_BUCAP GTP-dependent nucleic acid-binding protein ...    30   4.6  
sp|Q1KKX7|HXB3A_FUGRU Homeobox protein Hox-B3a OS=Fugu rubripes ...    30   5.9  
sp|P57288|ENGD_BUCAI GTP-dependent nucleic acid-binding protein ...    30   6.0  
sp|Q9WVR3|SHIP2_RAT Phosphatidylinositol-3,4,5-trisphosphate 5-p...    26   6.7  
sp|Q9QZR8|PDZD2_RAT PDZ domain-containing protein 2 OS=Rattus no...    30   7.8  
sp|O52513|MTS1_STRFI Modification methylase SfiI OS=Streptomyces...    30   7.8  
sp|Q5Z1C4|METX_NOCFA Homoserine O-acetyltransferase OS=Nocardia ...    30   7.8  
sp|Q10CE7|GSTU1_ORYSJ Probable glutathione S-transferase GSTU1 O...    30   7.8  
sp|A6U8N8|SYS_SINMW Seryl-tRNA synthetase OS=Sinorhizobium medic...    30   7.9  

>sp|P37707|B2_DAUCA B2 protein OS=Daucus carota PE=2 SV=1
          Length = 207

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 19/27 (70%), Positives = 25/27 (92%)
 Frame = +2

Query: 2   LHHYDGPKFRLQLSVPETLALLDLFTE 82
           LHHYDGPKFRL+L++PE ++LLD+F E
Sbjct: 178 LHHYDGPKFRLELNIPEAISLLDIFEE 204


>sp|Q7P1I1|UNG_CHRVO Uracil-DNA glycosylase OS=Chromobacterium
           violaceum GN=ung PE=3 SV=1
          Length = 238

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 237 IYHHWSSMIFQMHYIIRSAAPHRMGQVRSRTGSSLAPKPPTLYIQLAHTIPASVK 73
           I+  W +++ Q     R A   R+  ++ + G +L P PP ++  LA   PA VK
Sbjct: 11  IHPDWEAVLDQAAVAARLAEIDRLLVLQQQDGKTLFPPPPQVFNALAFAAPADVK 65


>sp|Q90WM5|DMRT3_FUGRU Doublesex- and mab-3-related transcription
           factor 3 OS=Fugu rubripes GN=dmrt3 PE=2 SV=2
          Length = 468

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
 Frame = -1

Query: 243 HNIYHHWSSMIFQMHYIIRSAA-------PHRMGQVRSRTGSSLAPKPP 118
           HN    W++M  Q  Y +RSAA       P R G    R+   L+P+PP
Sbjct: 377 HNDVTLWNTMALQQQYQLRSAAQYVSPFSPARSGGTVFRSSPILSPRPP 425


>sp|Q6XBJ3|ONEC2_MOUSE One cut domain family member 2 OS=Mus
           musculus GN=Onecut2 PE=2 SV=1
          Length = 486

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 195 IIRSAAPHRMGQVRSRTGSSLAPKPPTLYIQLAHTIPASVKRSRRAKVSGTES 37
           ++ S +PH  G  R   GS   P PPT + +L     A+   SR A V+   S
Sbjct: 42  LLASPSPHHAG--RGAAGSLRGPPPPTAHQELGTAAAAAAAASRSAMVTSMAS 92


>sp|Q5AG31|MED14_CANAL Mediator of RNA polymerase II transcription
           subunit 14 OS=Candida albicans GN=RGR1 PE=3 SV=2
          Length = 1270

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -1

Query: 387 LLHSYRNKPKTLLLHKTGQAFLMKA-WQGVLLIWAHSKAHNIPCMEYRQHNIYHHWSSMI 211
           LLH Y N  K  LL K  Q  L+ + W+G   I   +    I    + QH +  +W S I
Sbjct: 294 LLHKYSNSFKIYLLAKQFQTLLINSRWRGNFQINYQTNKSLIVINYWSQHYLSRNWKSFI 353


>sp|Q5DU25|IQEC2_MOUSE IQ motif and SEC7 domain-containing protein 2
            OS=Mus musculus GN=Iqsec2 PE=1 SV=2
          Length = 1478

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
 Frame = -3

Query: 361  ENFTPTQNRTSFPYEGLARGPTYLGPFESTQHPMYGVPTTQYLSPLVKHDF--------P 206
            ++F  + +    P  G A GP    P  S  HP +        SP+  H          P
Sbjct: 1376 KHFIFSHHPQMMPAAGAAGGPGSRPPGGSYSHPHHPQSPLSPHSPIPPHPSYPPLPPPSP 1435

Query: 205  NALHYPICRTAPHGP 161
            +  H P+  T+PHGP
Sbjct: 1436 HTPHSPLPPTSPHGP 1450


>sp|Q5JU85|IQEC2_HUMAN IQ motif and SEC7 domain-containing protein 2
            OS=Homo sapiens GN=IQSEC2 PE=2 SV=1
          Length = 1478

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
 Frame = -3

Query: 361  ENFTPTQNRTSFPYEGLARGPTYLGPFESTQHPMYGVPTTQYLSPLVKHDF--------P 206
            ++F  + +    P  G A GP    P  S  HP +        SP+  H          P
Sbjct: 1376 KHFIFSHHPQMMPAAGAAGGPGSRPPGGSYSHPHHPQSPLSPHSPIPPHPSYPPLPPPSP 1435

Query: 205  NALHYPICRTAPHGP 161
            +  H P+  T+PHGP
Sbjct: 1436 HTPHSPLPPTSPHGP 1450


>sp|Q8K9V2|ENGD_BUCAP GTP-dependent nucleic acid-binding protein
           engD OS=Buchnera aphidicola subsp. Schizaphis graminum
           GN=engD PE=3 SV=3
          Length = 362

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 151 TSYLAHAVRCGRSDNVMHLENHA*PVV-INIVLSVL 255
           T  +AH VRC + DNV H+ N   P + ++I+ S L
Sbjct: 97  THAIAHVVRCFKDDNVSHIYNQLQPKIDVDIINSEL 132


>sp|Q1KKX7|HXB3A_FUGRU Homeobox protein Hox-B3a OS=Fugu rubripes
           GN=hoxb3a PE=3 SV=1
          Length = 474

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
 Frame = -3

Query: 352 TPTQNRTSFPYEGLARGPTYLGPFESTQHPMYGVPTTQYLSPLVKH----DFPNALHYPI 185
           TPT  + S  Y G   G +YL P   +   MYG+    +L P   H    D+  A   P+
Sbjct: 375 TPTNMQGSPVYVG---GGSYLEPMPGSGPSMYGL---NHLGPTPTHHQTMDYNGA--GPM 426

Query: 184 CRTAPHGPGKKSNRKLSSSKTTNIVHTASSHHTSLREKVQKSQSL 50
             T  H  G           T       S+HHTS + ++Q++  L
Sbjct: 427 SATNQHHVGGGGPPGPCDPPTHPTYTELSAHHTSSQGRIQEAPKL 471


>sp|P57288|ENGD_BUCAI GTP-dependent nucleic acid-binding protein
           engD OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
           GN=engD PE=3 SV=3
          Length = 362

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 160 LAHAVRCGRSDNVMHLENHA*PVV-INIVLSVL 255
           +AH VRC + DN+ H+ N   P+  I+I+ S L
Sbjct: 100 IAHVVRCFKDDNITHIYNQVQPIKDIDIINSEL 132
tr_hit_id A9NP04
Definition tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 27
Score (bit) 57.0
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946082|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_G10, 5'
         (492 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea...    57   5e-07
tr|B8LQZ7|B8LQZ7_PICSI Putative uncharacterized protein OS=Picea...    55   2e-06
tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medic...    54   5e-06
tr|A9T5I7|A9T5I7_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-06
tr|Q9LSC7|Q9LSC7_ARATH Similarity to unknown protein (AT3g27090/...    53   7e-06
tr|Q8LBT1|Q8LBT1_ARATH Gda-1, putative OS=Arabidopsis thaliana P...    53   7e-06
tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solan...    53   7e-06
tr|A7Q7R8|A7Q7R8_VITVI Chromosome chr18 scaffold_61, whole genom...    53   9e-06
tr|A5AK97|A5AK97_VITVI Putative uncharacterized protein OS=Vitis...    53   9e-06
tr|Q8L6E9|Q8L6E9_PEA GDA2 protein OS=Pisum sativum GN=gda2 PE=2 ...    52   1e-05
tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citru...    52   1e-05
tr|Q9FHX9|Q9FHX9_ARATH Arabidopsis thaliana genomic DNA, chromos...    51   3e-05
tr|Q9AYM6|Q9AYM6_VIGUN CPRD48 protein (Fragment) OS=Vigna unguic...    51   3e-05
tr|Q8RXN8|Q8RXN8_ARATH Putative uncharacterized protein At5g4205...    51   3e-05
tr|A7QU74|A7QU74_VITVI Chromosome chr2 scaffold_176, whole genom...    51   3e-05
tr|Q5JZR1|Q5JZR1_SOYBN N-rich protein OS=Glycine max GN=nrp PE=2...    50   4e-05
tr|A9PHN9|A9PHN9_POPTR Putative uncharacterized protein OS=Popul...    50   4e-05
tr|B7ZYQ7|B7ZYQ7_MAIZE Putative uncharacterized protein OS=Zea m...    49   1e-04
tr|B6TMX1|B6TMX1_MAIZE N-rich protein OS=Zea mays PE=2 SV=1            49   1e-04
tr|B4F858|B4F858_MAIZE Putative uncharacterized protein OS=Zea m...    49   1e-04
tr|Q6L4U7|Q6L4U7_ORYSJ Os05g0498700 protein OS=Oryza sativa subs...    49   1e-04
tr|B8AZL0|B8AZL0_ORYSI Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|B6TDG4|B6TDG4_MAIZE Gda-1 OS=Zea mays PE=2 SV=1                     49   1e-04
tr|B4FUR5|B4FUR5_MAIZE Putative uncharacterized protein OS=Zea m...    49   1e-04
tr|B8A073|B8A073_MAIZE Putative uncharacterized protein OS=Zea m...    49   2e-04
tr|B6T8N2|B6T8N2_MAIZE Gda-1 OS=Zea mays PE=2 SV=1                     49   2e-04
tr|Q5TKG4|Q5TKG4_ORYSJ Os05g0594100 protein OS=Oryza sativa subs...    48   2e-04
tr|Q5JK83|Q5JK83_ORYSJ cDNA clone:001-207-H09, full insert seque...    48   2e-04
tr|Q5JK82|Q5JK82_ORYSJ Putative GDA2 protein (Os01g0550300 prote...    48   2e-04
tr|B8AA12|B8AA12_ORYSI Putative uncharacterized protein OS=Oryza...    48   2e-04

>tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 273

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/27 (96%), Positives = 26/27 (96%)
 Frame = +2

Query: 2   LHHYDGPKFRLQLSVPETLALLDLFTE 82
           LHHYDGPKFRLQLSVPETLALLDLF E
Sbjct: 244 LHHYDGPKFRLQLSVPETLALLDLFEE 270


>tr|B8LQZ7|B8LQZ7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 282

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +2

Query: 2   LHHYDGPKFRLQLSVPETLALLDLFTEAGM 91
           LHHYDGPKFRLQLS+PETLAL+DL T+  M
Sbjct: 253 LHHYDGPKFRLQLSIPETLALMDLCTQNSM 282


>tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 302

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +2

Query: 2   LHHYDGPKFRLQLSVPETLALLDLFTEAGMV 94
           LHHYDGPKFRL+LSVPETL L+DL  +AG V
Sbjct: 271 LHHYDGPKFRLELSVPETLDLMDLCEQAGSV 301


>tr|A9T5I7|A9T5I7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_191832 PE=4 SV=1
          Length = 177

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   LHHYDGPKFRLQLSVPETLALLDLFTEAG 88
           LHHYDGPKFRLQLSVPE + LLDLF E G
Sbjct: 147 LHHYDGPKFRLQLSVPEAVELLDLFEENG 175


>tr|Q9LSC7|Q9LSC7_ARATH Similarity to unknown protein
           (AT3g27090/MOJ10_18) OS=Arabidopsis thaliana
           GN=At3g27090 PE=2 SV=1
          Length = 296

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = +2

Query: 2   LHHYDGPKFRLQLSVPETLALLDLFTEAG 88
           LHHYDGPKFRL+LSVPETL LLDL  +AG
Sbjct: 266 LHHYDGPKFRLELSVPETLDLLDLCEQAG 294


>tr|Q8LBT1|Q8LBT1_ARATH Gda-1, putative OS=Arabidopsis thaliana PE=2
           SV=1
          Length = 296

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = +2

Query: 2   LHHYDGPKFRLQLSVPETLALLDLFTEAG 88
           LHHYDGPKFRL+LSVPETL LLDL  +AG
Sbjct: 266 LHHYDGPKFRLELSVPETLDLLDLCEQAG 294


>tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 298

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +2

Query: 2   LHHYDGPKFRLQLSVPETLALLDLFTEAGM 91
           LHHYDGPKFRL+LSVPETL LLDL  +AG+
Sbjct: 269 LHHYDGPKFRLELSVPETLDLLDLCEKAGV 298


>tr|A7Q7R8|A7Q7R8_VITVI Chromosome chr18 scaffold_61, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031971001
           PE=4 SV=1
          Length = 215

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = +2

Query: 2   LHHYDGPKFRLQLSVPETLALLDLFTE 82
           L+HYDGPKFRLQLSVPE LALLDLF E
Sbjct: 186 LYHYDGPKFRLQLSVPEALALLDLFEE 212


>tr|A5AK97|A5AK97_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040037 PE=4 SV=1
          Length = 217

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = +2

Query: 2   LHHYDGPKFRLQLSVPETLALLDLFTE 82
           L+HYDGPKFRLQLSVPE LALLDLF E
Sbjct: 188 LYHYDGPKFRLQLSVPEALALLDLFEE 214


>tr|Q8L6E9|Q8L6E9_PEA GDA2 protein OS=Pisum sativum GN=gda2 PE=2
           SV=1
          Length = 213

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 23/29 (79%), Positives = 26/29 (89%)
 Frame = +2

Query: 2   LHHYDGPKFRLQLSVPETLALLDLFTEAG 88
           LHHYDGPKFRL+LSVPETL L+DL  +AG
Sbjct: 182 LHHYDGPKFRLELSVPETLDLMDLCEQAG 210