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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946085
Clone id YMU02A01NGRL0011_G13
Library
Length 343
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_G13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATAACTGGAGTGTAAAAGCGATCAGGAGAAAGACCGCAGGAACTGGAAGGATGCGCCAT
TTGCGACATCTGCCGCGGCTTTTCAAAAACAACTTTAGAGAGGGGACGACTGCGCCATCT
AAACAGTCTAAGGCTGCAGCGATGGCTTAGGATCATTTGATGTCTTTGAGGAAGATGTAC
GGAGATTCCTTTATCAAGAGAGGTGCATGTGAACTGAACCTTCCTGAGGGGATACAATGT
CATTACAATTTCGACCTTTGTAGCTATGGAGCTTTTTTTGATTATTGGCCTCCTGTTACT
GGATGCTTTACCAATTTGAGTTTTCTACAGGCCAAGTTTTGGC
■■Homology search results ■■ -
sp_hit_id P49212
Definition sp|P49212|RL37_SOLLC 60S ribosomal protein L37 (Fragment) OS=Solanum lycopersicum
Align length 47
Score (bit) 70.1
E-value 3.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946085|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_G13, 5'
         (343 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49212|RL37_SOLLC 60S ribosomal protein L37 (Fragment) OS=Sol...    70   3e-12
sp|Q8LEM8|RL373_ARATH 60S ribosomal protein L37-3 OS=Arabidopsis...    67   3e-11
sp|Q43292|RL372_ARATH 60S ribosomal protein L37-2 OS=Arabidopsis...    66   5e-11
sp|Q8LFH7|RL371_ARATH 60S ribosomal protein L37-1 OS=Arabidopsis...    66   6e-11
sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A OS=Dr...    60   3e-09
sp|P61928|RL37_RAT 60S ribosomal protein L37 OS=Rattus norvegicu...    58   2e-08
sp|Q9D823|RL37_MOUSE 60S ribosomal protein L37 OS=Mus musculus G...    58   2e-08
sp|P61927|RL37_HUMAN 60S ribosomal protein L37 OS=Homo sapiens G...    58   2e-08
sp|P79244|RL37_BOVIN 60S ribosomal protein L37 OS=Bos taurus GN=...    58   2e-08
sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37 OS=Spodoptera fru...    56   5e-08
sp|Q90YT1|RL37_ICTPU 60S ribosomal protein L37 OS=Ictalurus punc...    55   8e-08
sp|P49166|RL37A_YEAST 60S ribosomal protein L37-A OS=Saccharomyc...    51   2e-06
sp|P51402|RL37B_YEAST 60S ribosomal protein L37-B OS=Saccharomyc...    50   3e-06
sp|O44125|RL37_SCHMA 60S ribosomal protein L37 OS=Schistosoma ma...    50   3e-06
sp|Q9P836|RL37_CANAL 60S ribosomal protein L37 (Fragment) OS=Can...    49   6e-06
sp|P49622|RL37_CAEEL 60S ribosomal protein L37 OS=Caenorhabditis...    49   6e-06
sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B OS=Schizosacch...    48   1e-05
sp|Q9W1U6|RL372_DROME Probable 60S ribosomal protein L37-B OS=Dr...    48   1e-05
sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37 OS=Emericella nid...    48   2e-05
sp|Q54MG6|RL37_DICDI 60S ribosomal protein L37 OS=Dictyostelium ...    46   5e-05
sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A OS=Schizosacch...    46   5e-05
sp|P62886|RL37_LEIIN 60S ribosomal protein L37 OS=Leishmania inf...    40   0.003
sp|P62885|RL37_LEIDO 60S ribosomal protein L37 OS=Leishmania don...    40   0.003
sp|Q32IH0|GPMA_SHIDS 2,3-bisphosphoglycerate-dependent phosphogl...    30   4.9  
sp|Q3B2G7|PSD_PELLD Phosphatidylserine decarboxylase proenzyme O...    29   6.4  

>sp|P49212|RL37_SOLLC 60S ribosomal protein L37 (Fragment)
           OS=Solanum lycopersicum GN=RPL37 PE=3 SV=1
          Length = 64

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 34/47 (72%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGT-TAPSKQSKAAA 141
           NWSVKA+RRKT GTGRMR+LR++PR FK NFREGT  AP K+  AAA
Sbjct: 17  NWSVKALRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGTAAA 63


>sp|Q8LEM8|RL373_ARATH 60S ribosomal protein L37-3 OS=Arabidopsis
           thaliana GN=RPL37C PE=3 SV=1
          Length = 95

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAAMA 147
           NWSVKAIRRKT GTGRMR+LR++PR FK  FREGT A  +   +A+ A
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95


>sp|Q43292|RL372_ARATH 60S ribosomal protein L37-2 OS=Arabidopsis
           thaliana GN=RPL37B PE=2 SV=2
          Length = 95

 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 31/48 (64%), Positives = 36/48 (75%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAAMA 147
           NWSVKAIRRKT GTGRMR+LR++PR FK  FREGT A  +    A+ A
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95


>sp|Q8LFH7|RL371_ARATH 60S ribosomal protein L37-1 OS=Arabidopsis
           thaliana GN=RPL37A PE=2 SV=1
          Length = 95

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 31/46 (67%), Positives = 36/46 (78%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAA 141
           NWSVKAIRRKT GTGRMR+LR++PR FK  FREGT A  +   AA+
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQATPRNKAAAS 93


>sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A
           OS=Drosophila melanogaster GN=RpL37a PE=3 SV=1
          Length = 93

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 28/45 (62%), Positives = 35/45 (77%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAA 138
           NWSVKA RRKT GTGRM+HL+ + R F+N FREGT A  K++ A+
Sbjct: 48  NWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQAKPKKAVAS 92


>sp|P61928|RL37_RAT 60S ribosomal protein L37 OS=Rattus norvegicus
           GN=Rpl37 PE=1 SV=2
          Length = 97

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAA 141
           NWS KA RR T GTGRMRHL+ + R F++ FREGTT   K++  AA
Sbjct: 48  NWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAA 93


>sp|Q9D823|RL37_MOUSE 60S ribosomal protein L37 OS=Mus musculus
           GN=Rpl37 PE=2 SV=3
          Length = 97

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAA 141
           NWS KA RR T GTGRMRHL+ + R F++ FREGTT   K++  AA
Sbjct: 48  NWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAA 93


>sp|P61927|RL37_HUMAN 60S ribosomal protein L37 OS=Homo sapiens
           GN=RPL37 PE=1 SV=2
          Length = 97

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAA 141
           NWS KA RR T GTGRMRHL+ + R F++ FREGTT   K++  AA
Sbjct: 48  NWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAA 93


>sp|P79244|RL37_BOVIN 60S ribosomal protein L37 OS=Bos taurus
           GN=RPL37 PE=3 SV=4
          Length = 97

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAA 141
           NWS KA RR T GTGRMRHL+ + R F++ FREGTT   K++  AA
Sbjct: 48  NWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAA 93


>sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37 OS=Spodoptera
           frugiperda GN=RpL37 PE=3 SV=3
          Length = 92

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 25/40 (62%), Positives = 30/40 (75%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSK 123
           +WSVKA RRKT GTGRMRHL+ + R F+N F+EG   P K
Sbjct: 48  HWSVKAKRRKTTGTGRMRHLKIVRRRFRNGFKEGKPTPKK 87
tr_hit_id A9T1V8
Definition tr|A9T1V8|A9T1V8_PHYPA Ribosomal protein L37 OS=Physcomitrella patens subsp. patens
Align length 46
Score (bit) 76.6
E-value 6.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946085|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_G13, 5'
         (343 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T1V8|A9T1V8_PHYPA Ribosomal protein L37 OS=Physcomitrella p...    77   6e-13
tr|B6UF11|B6UF11_MAIZE 60S ribosomal protein L37 OS=Zea mays PE=...    76   1e-12
tr|B6SGI4|B6SGI4_MAIZE 60S ribosomal protein L37 OS=Zea mays PE=...    76   1e-12
tr|A9U3Q8|A9U3Q8_PHYPA Ribosomal protein L37 OS=Physcomitrella p...    76   1e-12
tr|A9NJS5|A9NJS5_PICSI Ribosomal protein L37 OS=Picea sitchensis...    76   1e-12
tr|A9SIS5|A9SIS5_PHYPA Ribosomal protein L37 OS=Physcomitrella p...    75   1e-12
tr|A9RRQ3|A9RRQ3_PHYPA Ribosomal protein L37 OS=Physcomitrella p...    75   2e-12
tr|B6T4D2|B6T4D2_MAIZE 60S ribosomal protein L37 OS=Zea mays PE=...    74   4e-12
tr|A9TFX4|A9TFX4_PHYPA Ribosomal protein L37 (Fragment) OS=Physc...    74   5e-12
tr|Q6Z8Y5|Q6Z8Y5_ORYSJ Ribosomal protein L37 OS=Oryza sativa sub...    73   8e-12
tr|A9P9H4|A9P9H4_POPTR Ribosomal protein L37 OS=Populus trichoca...    73   8e-12
tr|A2X009|A2X009_ORYSI Ribosomal protein L37 OS=Oryza sativa sub...    73   8e-12
tr|Q6K8N7|Q6K8N7_ORYSJ Ribosomal protein L37 OS=Oryza sativa sub...    72   1e-11
tr|A2XAY8|A2XAY8_ORYSI Ribosomal protein L37 OS=Oryza sativa sub...    72   1e-11
tr|Q7EZS5|Q7EZS5_ORYSJ Putative uncharacterized protein P0582D05...    72   2e-11
tr|Q0J889|Q0J889_ORYSJ Ribosomal protein L37 OS=Oryza sativa sub...    71   2e-11
tr|B6TLT4|B6TLT4_MAIZE 60S ribosomal protein L37 OS=Zea mays PE=...    71   2e-11
tr|A3BPA3|A3BPA3_ORYSJ Ribosomal protein L37 OS=Oryza sativa sub...    71   2e-11
tr|A9PBN7|A9PBN7_POPTR Ribosomal protein L37 OS=Populus trichoca...    70   4e-11
tr|A7P5C6|A7P5C6_VITVI Ribosomal protein L37 OS=Vitis vinifera G...    70   4e-11
tr|B8BAF5|B8BAF5_ORYSI Putative uncharacterized protein OS=Oryza...    70   5e-11
tr|B6T0Z1|B6T0Z1_MAIZE 60S ribosomal protein L37 OS=Zea mays PE=...    69   9e-11
tr|A7P7B2|A7P7B2_VITVI Ribosomal protein L37 OS=Vitis vinifera G...    69   2e-10
tr|A9PFX5|A9PFX5_POPTR Ribosomal protein L37 OS=Populus trichoca...    67   3e-10
tr|Q6SPR2|Q6SPR2_SOYBN Ribosomal protein L37 OS=Glycine max GN=R...    67   4e-10
tr|Q0WW79|Q0WW79_ARATH Ribosomal protein L37 OS=Arabidopsis thal...    67   4e-10
tr|A9PBK5|A9PBK5_POPTR Ribosomal protein L37 OS=Populus trichoca...    66   1e-09
tr|B7FGF1|B7FGF1_MEDTR Putative uncharacterized protein OS=Medic...    65   1e-09
tr|Q014K1|Q014K1_OSTTA Ribosomal protein L37 OS=Ostreococcus tau...    64   3e-09
tr|A4S0P5|A4S0P5_OSTLU Ribosomal protein L37 OS=Ostreococcus luc...    64   4e-09

>tr|A9T1V8|A9T1V8_PHYPA Ribosomal protein L37 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_218100 PE=3 SV=1
          Length = 93

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 35/46 (76%), Positives = 39/46 (84%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAA 141
           NWSVKAIRRKT GTGRMRHLRHLPR F NNFREGT A  K++ A++
Sbjct: 48  NWSVKAIRRKTTGTGRMRHLRHLPRRFSNNFREGTQAAPKKAPASS 93


>tr|B6UF11|B6UF11_MAIZE 60S ribosomal protein L37 OS=Zea mays PE=4
           SV=1
          Length = 110

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 35/46 (76%), Positives = 40/46 (86%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAA 141
           NWSVKAIRRKT GTGRMR++RH+PR FK+NFREGT A  K+S AAA
Sbjct: 64  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEAAPKKSAAAA 109


>tr|B6SGI4|B6SGI4_MAIZE 60S ribosomal protein L37 OS=Zea mays PE=4
           SV=1
          Length = 94

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 35/46 (76%), Positives = 40/46 (86%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAA 141
           NWSVKAIRRKT GTGRMR++RH+PR FK+NFREGT A  K+S AAA
Sbjct: 48  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEAAPKKSAAAA 93


>tr|A9U3Q8|A9U3Q8_PHYPA Ribosomal protein L37 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_200899 PE=3 SV=1
          Length = 93

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 35/46 (76%), Positives = 38/46 (82%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAA 141
           NWSVKAIRRKT GTGRMRHLRHLPR F NNFREGT A  K++ A +
Sbjct: 48  NWSVKAIRRKTTGTGRMRHLRHLPRRFSNNFREGTQAAPKKTVATS 93


>tr|A9NJS5|A9NJS5_PICSI Ribosomal protein L37 OS=Picea sitchensis
           PE=3 SV=1
          Length = 95

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 35/45 (77%), Positives = 38/45 (84%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAA 138
           NWSVKAIRRKT GTGRMR+LRH+PR FKNNFREGT A  K+  AA
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRHMPRRFKNNFREGTQATPKKKAAA 92


>tr|A9SIS5|A9SIS5_PHYPA Ribosomal protein L37 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_185387 PE=3 SV=1
          Length = 93

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 35/45 (77%), Positives = 37/45 (82%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAA 138
           NWSVKAIRRKT GTGRMRHLRHLPR F NNFREGT A  ++  AA
Sbjct: 48  NWSVKAIRRKTTGTGRMRHLRHLPRRFSNNFREGTQAAPRKQVAA 92


>tr|A9RRQ3|A9RRQ3_PHYPA Ribosomal protein L37 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_205025 PE=3 SV=1
          Length = 93

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 35/46 (76%), Positives = 37/46 (80%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAA 141
           NWSVKAIRRKT GTGRMRHLRHLPR F NNFREG  A  ++  AAA
Sbjct: 48  NWSVKAIRRKTTGTGRMRHLRHLPRRFSNNFREGAQAAPRKQVAAA 93


>tr|B6T4D2|B6T4D2_MAIZE 60S ribosomal protein L37 OS=Zea mays PE=4
           SV=1
          Length = 94

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 34/46 (73%), Positives = 39/46 (84%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAA 141
           NWSVKAIRRKT GTGRMR++RH+PR FK+NFREGT A  K+  AAA
Sbjct: 48  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEAAPKKGVAAA 93


>tr|A9TFX4|A9TFX4_PHYPA Ribosomal protein L37 (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_9441 PE=3 SV=1
          Length = 84

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 33/37 (89%), Positives = 34/37 (91%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTA 114
           NWSVKAIRRKT GTGRMRHLRHLPR F NNFREGT+A
Sbjct: 48  NWSVKAIRRKTTGTGRMRHLRHLPRRFSNNFREGTSA 84


>tr|Q6Z8Y5|Q6Z8Y5_ORYSJ Ribosomal protein L37 OS=Oryza sativa subsp.
           japonica GN=P0501G04.27 PE=3 SV=1
          Length = 94

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 33/46 (71%), Positives = 39/46 (84%)
 Frame = +1

Query: 4   NWSVKAIRRKTAGTGRMRHLRHLPRLFKNNFREGTTAPSKQSKAAA 141
           NWSVKAIRRKT GTGRMR++RH+PR FK+NFREGT A  ++  AAA
Sbjct: 48  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRKRAAAA 93