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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946088
Clone id YMU02A01NGRL0011_G16
Library
Length 568
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_G16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCACTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGCGTCTGGATGGGGCATACATG
GCGTCAAGGGCCGTTGCTTCGACCTGTGGATGGACTTCAGCGATTGTATGTCCAACTGCA
CTACTCCCTCTGAATGCTTTCCCCTTCGCGAGGACTACTTTGAATGCCTCCACCATCGAA
AGGAGTTTGCTCGGCTGTATGCGATTTCAAAAGAGAAGAAACGTCAAGAGGTACTGACAA
AAGCAAAGAAGTCAGCAGATAAGAAAGAACATTAGTTTCTAAAACTTATGGCATACCCTC
AGTTCTATACCACCTTGCTTGGGGGCTTTATGTTTTCCTTGGCTTTTGAACCCTGGTGCT
CTATTCATGATACACAGGAAGTCTTGTGAAGCGATAAGATAGCATGGAAATCATATAGTG
TTGGTATATGTTTTGCTTATTTTTGAAGGGGTTGTATTGCCAGCAGGATTTTGTGAGCAC
CCAGTTTCAATTTGTAAGCAATAAGAAGTCGAACTTTTTGTTTTTTTTACTCATTGATTG
CTTCAATTCAGTAGTCTATTCAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q02379
Definition sp|Q02379|NDUS5_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Bos taurus
Align length 59
Score (bit) 32.3
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946088|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_G16, 5'
         (568 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02379|NDUS5_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfu...    32   1.7  

>sp|Q02379|NDUS5_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 5 OS=Bos taurus GN=NDUFS5 PE=1 SV=2
          Length = 106

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 57  HGVKGRCFDL---WMDFSDCMSNCTTPSECFPLREDYFECLHHRKEFARLYAISKEKKR 224
           H +  RC      W++ +  + +     EC    ED+ ECL  +K   RL+AI +++++
Sbjct: 27  HKIPSRCHAFEKEWIECAHGIGSIRAEKECKIEFEDFRECLLRQKTMKRLHAIRRQREK 85
tr_hit_id A9NTG6
Definition tr|A9NTG6|A9NTG6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 81
Score (bit) 108.0
E-value 3.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946088|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_G16, 5'
         (568 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NTG6|A9NTG6_PICSI Putative uncharacterized protein OS=Picea...   108   3e-22
tr|A9RD10|A9RD10_PHYPA Predicted protein OS=Physcomitrella paten...   107   3e-22
tr|A9RII1|A9RII1_PHYPA Predicted protein (Fragment) OS=Physcomit...   106   8e-22
tr|B6SPR5|B6SPR5_MAIZE Fb14 OS=Zea mays PE=4 SV=1                     101   3e-20
tr|B0LUW2|B0LUW2_CAMSI NADH-ubiquinone oxidoreductase-like prote...   100   9e-20
tr|A9P8Y5|A9P8Y5_POPTR Putative uncharacterized protein OS=Popul...   100   9e-20
tr|Q9LZI6|Q9LZI6_ARATH Putative uncharacterized protein F26K9_22...    98   3e-19
tr|Q8L9F7|Q8L9F7_ARATH Putative uncharacterized protein OS=Arabi...    98   3e-19
tr|Q0WRL8|Q0WRL8_ARATH Putative uncharacterized protein At2g4769...    98   3e-19
tr|O82238|O82238_ARATH Putative uncharacterized protein At2g4769...    98   3e-19
tr|Q6ZJ19|Q6ZJ19_ORYSJ Os08g0556600 protein OS=Oryza sativa subs...    98   4e-19
tr|A2YY10|A2YY10_ORYSI Putative uncharacterized protein OS=Oryza...    98   4e-19
tr|Q7X9S6|Q7X9S6_GOSBA Fiber protein Fb14 OS=Gossypium barbadens...    97   6e-19
tr|Q4TZT1|Q4TZT1_GOSHI Fb14 OS=Gossypium hirsutum PE=4 SV=1            97   6e-19
tr|B3H4P7|B3H4P7_ARATH Uncharacterized protein At2g47690.2 OS=Ar...    89   2e-16
tr|A4S5C5|A4S5C5_OSTLU Predicted protein OS=Ostreococcus lucimar...    77   9e-13
tr|A8QBL8|A8QBL8_MALGO Putative uncharacterized protein OS=Malas...    70   6e-11
tr|Q00YA2|Q00YA2_OSTTA NADH-ubiquinone oxidoreductase-related (I...    70   1e-10
tr|A8NCB7|A8NCB7_COPC7 Predicted protein OS=Coprinopsis cinerea ...    70   1e-10
tr|Q5KD82|Q5KD82_CRYNE Putative uncharacterized protein OS=Crypt...    69   2e-10
tr|Q4P1G2|Q4P1G2_USTMA Putative uncharacterized protein OS=Ustil...    68   3e-10
tr|B0DBK0|B0DBK0_LACBS Predicted protein OS=Laccaria bicolor (st...    65   3e-09
tr|Q2HBE3|Q2HBE3_CHAGB Putative uncharacterized protein OS=Chaet...    63   1e-08
tr|A6RZ64|A6RZ64_BOTFB Putative uncharacterized protein OS=Botry...    62   3e-08
tr|B2VX24|B2VX24_PYRTR NADH:ubiquinone oxidoreductase 11.5kD sub...    61   4e-08
tr|A6QS29|A6QS29_AJECN Predicted protein OS=Ajellomyces capsulat...    61   5e-08
tr|Q0U8N1|Q0U8N1_PHANO Putative uncharacterized protein OS=Phaeo...    60   8e-08
tr|Q9P6T9|Q9P6T9_NEUCR Putative uncharacterized protein 15E6.140...    60   1e-07
tr|B2B6S4|B2B6S4_PODAN Predicted CDS Pa_2_8690 OS=Podospora anse...    59   2e-07
tr|A4RA14|A4RA14_MAGGR Putative uncharacterized protein OS=Magna...    59   2e-07

>tr|A9NTG6|A9NTG6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 82

 Score =  108 bits (269), Expect = 3e-22
 Identities = 49/81 (60%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
 Frame = +3

Query: 36  MASGWGIHGVKGRCFDLWMDFSDCMSNCTTPSECFPLREDYFECLHHRKEFARLYAISKE 215
           MASGWGI G KGRC+D WMDFS+C S C  P +C PLREDYFECLHH KE++R  A+ KE
Sbjct: 1   MASGWGITGSKGRCYDFWMDFSECFSRCKEPRDCAPLREDYFECLHHGKEYSRRNAVYKE 60

Query: 216 KKRQ--EVLTKAKKSADKKEH 272
           K+RQ  E   K K +A    H
Sbjct: 61  KQRQLREAARKEKDAAAGDHH 81


>tr|A9RD10|A9RD10_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_111553 PE=4 SV=1
          Length = 80

 Score =  107 bits (268), Expect = 3e-22
 Identities = 46/79 (58%), Positives = 61/79 (77%)
 Frame = +3

Query: 36  MASGWGIHGVKGRCFDLWMDFSDCMSNCTTPSECFPLREDYFECLHHRKEFARLYAISKE 215
           MASG+G+ G KGRC+D+WMDFSDCMS+C+ P+EC   R+DYFECLHHRKE++R+ AI+KE
Sbjct: 1   MASGFGVTGKKGRCYDVWMDFSDCMSHCSMPAECTSRRDDYFECLHHRKEYSRMNAINKE 60

Query: 216 KKRQEVLTKAKKSADKKEH 272
           ++RQ    K +K      H
Sbjct: 61  RERQAFGDKNQKPHGSPGH 79


>tr|A9RII1|A9RII1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_54488 PE=4 SV=1
          Length = 64

 Score =  106 bits (265), Expect = 8e-22
 Identities = 43/64 (67%), Positives = 57/64 (89%)
 Frame = +3

Query: 36  MASGWGIHGVKGRCFDLWMDFSDCMSNCTTPSECFPLREDYFECLHHRKEFARLYAISKE 215
           MASG+G+ G KGRC+D+WMDFSDCMS+C+ P+EC   R+DYFECLHHRKE++R+ AI+KE
Sbjct: 1   MASGFGVTGKKGRCYDVWMDFSDCMSHCSMPAECTSRRDDYFECLHHRKEYSRMNAINKE 60

Query: 216 KKRQ 227
           ++RQ
Sbjct: 61  RERQ 64


>tr|B6SPR5|B6SPR5_MAIZE Fb14 OS=Zea mays PE=4 SV=1
          Length = 86

 Score =  101 bits (251), Expect = 3e-20
 Identities = 45/78 (57%), Positives = 58/78 (74%)
 Frame = +3

Query: 36  MASGWGIHGVKGRCFDLWMDFSDCMSNCTTPSECFPLREDYFECLHHRKEFARLYAISKE 215
           MASGWGI+G KGRC+D W++FS+CMS C  PS+C  LREDY ECLHH KEF R   I KE
Sbjct: 1   MASGWGINGNKGRCYDFWLEFSECMSRCRQPSDCGLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 216 KKRQEVLTKAKKSADKKE 269
           ++RQ +   A+K+ ++ E
Sbjct: 61  EQRQ-IRAAARKAKEEAE 77


>tr|B0LUW2|B0LUW2_CAMSI NADH-ubiquinone oxidoreductase-like protein
           OS=Camellia sinensis PE=4 SV=1
          Length = 83

 Score = 99.8 bits (247), Expect = 9e-20
 Identities = 46/81 (56%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
 Frame = +3

Query: 36  MASGWGIHGVKGRCFDLWMDFSDCMSNCTTPSECFPLREDYFECLHHRKEFARLYAISKE 215
           MASGWGI G KGRC+D WMDFS+CMS C  P +C  LREDY ECLHH KEF R   + KE
Sbjct: 1   MASGWGITGNKGRCYDFWMDFSECMSRCREPKDCAFLREDYLECLHHSKEFQRRNRVYKE 60

Query: 216 KKRQ--EVLTKAKKSADKKEH 272
           ++RQ      K K+  D   H
Sbjct: 61  EQRQLRAAARKGKEGGDIAGH 81


>tr|A9P8Y5|A9P8Y5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 82

 Score = 99.8 bits (247), Expect = 9e-20
 Identities = 46/76 (60%), Positives = 54/76 (71%)
 Frame = +3

Query: 36  MASGWGIHGVKGRCFDLWMDFSDCMSNCTTPSECFPLREDYFECLHHRKEFARLYAISKE 215
           MASGWGI G KGRC+D WMDFS+CMS C  P +C  LREDY ECLHH KEF R   I KE
Sbjct: 1   MASGWGITGNKGRCYDFWMDFSECMSQCREPKDCAFLREDYLECLHHSKEFQRRNRIYKE 60

Query: 216 KKRQEVLTKAKKSADK 263
           ++R+  L  A + AD+
Sbjct: 61  EQRK--LRAASQKADR 74


>tr|Q9LZI6|Q9LZI6_ARATH Putative uncharacterized protein F26K9_220
           OS=Arabidopsis thaliana GN=F26K9_220 PE=2 SV=1
          Length = 83

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 42/64 (65%), Positives = 49/64 (76%)
 Frame = +3

Query: 36  MASGWGIHGVKGRCFDLWMDFSDCMSNCTTPSECFPLREDYFECLHHRKEFARLYAISKE 215
           MASGWGI G KGRC+D WMDFS+CMS+C  P +C  LREDY ECLHH KEF R   I KE
Sbjct: 1   MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 216 KKRQ 227
           ++R+
Sbjct: 61  EQRK 64


>tr|Q8L9F7|Q8L9F7_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 83

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 42/64 (65%), Positives = 49/64 (76%)
 Frame = +3

Query: 36  MASGWGIHGVKGRCFDLWMDFSDCMSNCTTPSECFPLREDYFECLHHRKEFARLYAISKE 215
           MASGWGI G KGRC+D WMDFS+CMS+C  P +C  LREDY ECLHH KEF R   I KE
Sbjct: 1   MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 216 KKRQ 227
           ++R+
Sbjct: 61  EQRK 64


>tr|Q0WRL8|Q0WRL8_ARATH Putative uncharacterized protein At2g47690
           (Fragment) OS=Arabidopsis thaliana GN=At2g47690 PE=2
           SV=1
          Length = 91

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 42/64 (65%), Positives = 49/64 (76%)
 Frame = +3

Query: 36  MASGWGIHGVKGRCFDLWMDFSDCMSNCTTPSECFPLREDYFECLHHRKEFARLYAISKE 215
           MASGWGI G KGRC+D WMDFS+CMS+C  P +C  LREDY ECLHH KEF R   I KE
Sbjct: 9   MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 68

Query: 216 KKRQ 227
           ++R+
Sbjct: 69  EQRK 72


>tr|O82238|O82238_ARATH Putative uncharacterized protein At2g47690
           OS=Arabidopsis thaliana GN=At2g47690 PE=2 SV=1
          Length = 118

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 42/64 (65%), Positives = 49/64 (76%)
 Frame = +3

Query: 36  MASGWGIHGVKGRCFDLWMDFSDCMSNCTTPSECFPLREDYFECLHHRKEFARLYAISKE 215
           MASGWGI G KGRC+D WMDFS+CMS+C  P +C  LREDY ECLHH KEF R   I KE
Sbjct: 36  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 95

Query: 216 KKRQ 227
           ++R+
Sbjct: 96  EQRK 99