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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946089
Clone id YMU02A01NGRL0011_G17
Library
Length 429
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_G17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGGCCACTGAATGATTTTGAG
AGAGAGGGCTTAGTGAAACTAAAAGAGGAGCTGAAGGCAAGTATAGACAAAGGCACAGCC
TTCACTGCAAAAAAATGAGCGGTATTATTTTTTTGTAAATACCAGGAAGGGAGTATCATC
ATCTAAGCCCAACGTTAAGCATGGGAGGTTTAACGATTGTACCGGTCGTGCCGAGGGAGC
TTGCATCCTACAAAATACCCACATAGTGAGGAGATGGGGTGTTGGTTTTGTCTTTTAAAC
ATGTGGAAGTGTGTTTTACAAGTTGTACATTGTGTGAAGTCGTTTATTTGATTGGTTATC
TCCATAAGTTTCTGTTATAATAAGAAACTAGAACATTGGCCAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P17783
Definition sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus
Align length 27
Score (bit) 43.1
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946089|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_G17, 5'
         (361 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citr...    43   4e-04
sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycin...    41   0.002
sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial OS=Frag...    40   0.003
sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=A...    40   0.004
sp|Q9LKA3|MDHM2_ARATH Malate dehydrogenase 2, mitochondrial OS=A...    40   0.005
sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza ...    39   0.006
sp|Q9XFW3|MDHG2_BRANA Malate dehydrogenase 2, glyoxysomal OS=Bra...    38   0.018
sp|Q43743|MDHG1_BRANA Malate dehydrogenase 1, glyoxysomal OS=Bra...    38   0.018
sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal...    37   0.024
sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumi...    37   0.040
sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrul...    37   0.040
sp|Q9ZP05|MDHG1_ARATH Malate dehydrogenase, glyoxysomal OS=Arabi...    37   0.040
sp|Q9SN86|MDHP_ARATH Malate dehydrogenase, chloroplastic OS=Arab...    35   0.090
sp|Q43744|MDHM_BRANA Malate dehydrogenase, mitochondrial OS=Bras...    34   0.20 
sp|P46487|MDHM_EUCGU Malate dehydrogenase, mitochondrial OS=Euca...    34   0.26 
sp|Q42686|MDHM_CHLRE Malate dehydrogenase, mitochondrial OS=Chla...    32   1.00 
sp|A1BHM3|ISPE_CHLPD 4-diphosphocytidyl-2-C-methyl-D-erythritol ...    29   6.5  

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial
           OS=Citrullus lanatus GN=MMDH PE=1 SV=1
          Length = 347

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAF 83
           PL+DFE+EGL KLK ELKASI+KG  F
Sbjct: 317 PLSDFEKEGLEKLKPELKASIEKGIQF 343


>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine
           max PE=2 SV=2
          Length = 353

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/30 (63%), Positives = 23/30 (76%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAK 92
           PLND+ERE L K K+EL ASI+KG +F  K
Sbjct: 324 PLNDYERESLEKAKKELAASIEKGISFIRK 353


>sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial
           OS=Fragaria ananassa GN=MMDHI PE=1 SV=1
          Length = 339

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAF 83
           PL+DFE+EGL +LK ELK+SI+KG  F
Sbjct: 309 PLSDFEKEGLKQLKPELKSSIEKGIKF 335


>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial
           OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1
          Length = 341

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAF 83
           PL+DFE+EGL  LK ELK+SI+KG  F
Sbjct: 312 PLSDFEKEGLEALKPELKSSIEKGVKF 338


>sp|Q9LKA3|MDHM2_ARATH Malate dehydrogenase 2, mitochondrial
           OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1
          Length = 341

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAF 83
           PL+DFE+EGL  LK ELK+SI+KG  F
Sbjct: 312 PLSDFEKEGLEALKAELKSSIEKGIKF 338


>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza
           sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3
          Length = 356

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAK 92
           PLN+FER GL K K+EL  SI KG AF  K
Sbjct: 327 PLNEFERAGLEKAKKELAESIQKGVAFINK 356


>sp|Q9XFW3|MDHG2_BRANA Malate dehydrogenase 2, glyoxysomal
           OS=Brassica napus GN=MDH2 PE=3 SV=1
          Length = 358

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAK 92
           PLN++ER GL K KEEL  SI KG  F  K
Sbjct: 329 PLNEYERVGLEKAKEELAGSIQKGVDFIRK 358


>sp|Q43743|MDHG1_BRANA Malate dehydrogenase 1, glyoxysomal
           OS=Brassica napus GN=MDH1 PE=2 SV=2
          Length = 358

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAK 92
           PLN++ER GL K KEEL  SI KG  F  K
Sbjct: 329 PLNEYERVGLEKAKEELAGSIQKGVDFIRK 358


>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal
           OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1
          Length = 354

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAK 92
           PLN++ER GL K K+EL  SI KG  F  K
Sbjct: 325 PLNEYERMGLEKAKKELSVSIHKGVTFAKK 354


>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis
           sativus GN=MDHG PE=2 SV=1
          Length = 356

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAF 83
           PLN++ER GL K K+EL  SI+KG +F
Sbjct: 327 PLNEYERIGLEKAKKELAGSIEKGVSF 353
tr_hit_id A7P1X4
Definition tr|A7P1X4|A7P1X4_VITVI Malate dehydrogenase OS=Vitis vinifera
Align length 30
Score (bit) 42.7
E-value 0.009
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946089|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_G17, 5'
         (361 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P1X4|A7P1X4_VITVI Malate dehydrogenase OS=Vitis vinifera GN...    43   0.009
tr|A5BBI6|A5BBI6_VITVI Malate dehydrogenase OS=Vitis vinifera GN...    43   0.009
tr|A3CJQ9|A3CJQ9_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.026
tr|Q7XZE9|Q7XZE9_WHEAT Malate dehydrogenase (Fragment) OS=Tritic...    41   0.034
tr|Q9M6B3|Q9M6B3_VITVI Malate dehydrogenase OS=Vitis vinifera GN...    40   0.077
tr|B4FRJ1|B4FRJ1_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.077
tr|A7QDN2|A7QDN2_VITVI Malate dehydrogenase OS=Vitis vinifera GN...    40   0.077
tr|Q0ILQ0|Q0ILQ0_ORYSJ Malate dehydrogenase OS=Oryza sativa subs...    39   0.10 
tr|B8BN58|B8BN58_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.10 
tr|A9PCR0|A9PCR0_POPTR Malate dehydrogenase OS=Populus trichocar...    39   0.10 
tr|A9NXT5|A9NXT5_PICSI Malate dehydrogenase OS=Picea sitchensis ...    39   0.10 
tr|B6T3Y0|B6T3Y0_MAIZE Malate dehydrogenase, glyoxysomal OS=Zea ...    39   0.13 
tr|B4FVH1|B4FVH1_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.13 
tr|A9PIV9|A9PIV9_POPJC Malate dehydrogenase OS=Populus jackii PE...    39   0.13 
tr|O81279|O81279_SOYBN Malate dehydrogenase (Fragment) OS=Glycin...    39   0.17 
tr|Q9SMJ6|Q9SMJ6_CICAR Malate dehydrogenase (Fragment) OS=Cicer ...    38   0.22 
tr|Q94JA2|Q94JA2_ORYSJ Malate dehydrogenase OS=Oryza sativa subs...    38   0.22 
tr|Q7FSL4|Q7FSL4_ORYSA Malate dehydrogenase OS=Oryza sativa GN=M...    38   0.22 
tr|A2WT84|A2WT84_ORYSI Malate dehydrogenase OS=Oryza sativa subs...    38   0.22 
tr|B6SHX1|B6SHX1_MAIZE Malate dehydrogenase, glyoxysomal OS=Zea ...    38   0.29 
tr|B4G024|B4G024_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.29 
tr|B4FZW5|B4FZW5_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.29 
tr|A7QZG8|A7QZG8_VITVI Malate dehydrogenase OS=Vitis vinifera GN...    38   0.29 
tr|Q0WUS4|Q0WUS4_ARATH Malate dehydrogenase OS=Arabidopsis thali...    37   0.38 
tr|O48904|O48904_MEDSA Malate dehydrogenase OS=Medicago sativa G...    37   0.38 
tr|B6U5H4|B6U5H4_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.38 
tr|B6TGF1|B6TGF1_MAIZE Malate dehydrogenase OS=Zea mays PE=2 SV=1      37   0.38 
tr|B4FZU8|B4FZU8_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.38 
tr|B0LF72|B0LF72_PERFR Malate dehydrogenase OS=Perilla frutescen...    37   0.38 
tr|A9RZZ9|A9RZZ9_PHYPA Malate dehydrogenase OS=Physcomitrella pa...    37   0.50 

>tr|A7P1X4|A7P1X4_VITVI Malate dehydrogenase OS=Vitis vinifera
           GN=GSVIVT00027787001 PE=3 SV=1
          Length = 347

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAK 92
           PL+D+E+EGL KLK +LKASI+KG  F A+
Sbjct: 317 PLSDYEKEGLEKLKPDLKASIEKGIKFAAQ 346


>tr|A5BBI6|A5BBI6_VITVI Malate dehydrogenase OS=Vitis vinifera
           GN=VITISV_004210 PE=3 SV=1
          Length = 351

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAK 92
           PL+D+E+EGL KLK +LKASI+KG  F A+
Sbjct: 321 PLSDYEKEGLEKLKPDLKASIEKGIKFAAQ 350


>tr|A3CJQ9|A3CJQ9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035531 PE=3 SV=1
          Length = 429

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 20/31 (64%), Positives = 22/31 (70%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAKK 95
           PLN+FER GL K K+EL  SI KG AF  KK
Sbjct: 328 PLNEFERAGLEKAKKELAESIQKGVAFINKK 358


>tr|Q7XZE9|Q7XZE9_WHEAT Malate dehydrogenase (Fragment) OS=Triticum
           aestivum PE=2 SV=1
          Length = 245

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAK 92
           PLNDFER GL K K+EL  SI+KG +F  K
Sbjct: 216 PLNDFERAGLEKAKKELSESIEKGVSFMNK 245


>tr|Q9M6B3|Q9M6B3_VITVI Malate dehydrogenase OS=Vitis vinifera
           GN=MDH PE=2 SV=1
          Length = 352

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAK 92
           PL+D+E++GL  LK ELKASI+KG  F  +
Sbjct: 322 PLSDYEKQGLESLKHELKASIEKGIKFATQ 351


>tr|B4FRJ1|B4FRJ1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 340

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = +3

Query: 6   LNDFEREGLVKLKEELKASIDKGTAF 83
           L+DFE+EGL KLK ELK+SI+KG  F
Sbjct: 311 LSDFEKEGLEKLKSELKSSIEKGIKF 336


>tr|A7QDN2|A7QDN2_VITVI Malate dehydrogenase OS=Vitis vinifera
           GN=GSVIVT00035904001 PE=3 SV=1
          Length = 352

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAK 92
           PL+D+E++GL  LK ELKASI+KG  F  +
Sbjct: 322 PLSDYEKQGLESLKHELKASIEKGIKFATQ 351


>tr|Q0ILQ0|Q0ILQ0_ORYSJ Malate dehydrogenase OS=Oryza sativa subsp.
           japonica GN=Os12g0632700 PE=2 SV=1
          Length = 356

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAK 92
           PLN+FER GL K K+EL  SI KG AF  K
Sbjct: 327 PLNEFERAGLEKAKKELAESIQKGVAFINK 356


>tr|B8BN58|B8BN58_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_39238 PE=4 SV=1
          Length = 356

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAFTAK 92
           PLN+FER GL K K+EL  SI KG AF  K
Sbjct: 327 PLNEFERAGLEKAKKELAESIQKGVAFINK 356


>tr|A9PCR0|A9PCR0_POPTR Malate dehydrogenase OS=Populus trichocarpa
           PE=2 SV=1
          Length = 341

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   PLNDFEREGLVKLKEELKASIDKGTAF 83
           PL+D+E+EGL KLK EL++SI+KG  F
Sbjct: 312 PLSDYEKEGLEKLKPELQSSIEKGIKF 338