DK946091
Clone id YMU02A01NGRL0011_G19
Library
Length 624
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_G19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AGCTCAGGCCACAGCACCGCTCTCTTCTCCTGAGCATTCTCTCTTCTGCAGGACAATTGT
AGTTCTTGCTCCTGCTAAGTTCAGGTAGTCAAGCAATGGCGACCATGTCTGCGTCTCTAG
CAGTGAGCGCCCCGGGATGTGCCCCAGCAGAGCTGAGCCTCTCACAGAAGAGCTTCTCGG
GCCTCAAGGCCTCCACCATCGTCGCGCCCAAGTGTGGCAATCCCCTCGCCGTTTCCAATG
GCAGCCGTGTCAGCGCCATGCTGGTGTGGAAGCCGTACGACAACAAGAAGTTCGAGACTC
TGTCATATCTGCCGCAGCTGAGTAGCGAGCAGATAGCAAAGCAGGTGGACTACATGGTGC
GACAGAACTTTACTCCCTGCATCGAGTTCGACAACATTGGGAGCGTGTACCGGGAGCACT
TCCACGGGAGCGGGTACTACGATGGGAGGTACTGGGTGATGTGGAAGCTGCCCATGTTTG
GCTGCACCGACTCCGCCGCCGTGCTGCGCGAGATCACGGAGTGCGCCAAGGAGTACCCCA
AGGCATTCATCCGGGTGCTCGGCTTCGATGCCAAGCGGCAAGTTCAGGTTGCTGGCTTCC
TTGTCCAGAAGCCCGGCCAGTGAA
■■Homology search results ■■ -
sp_hit_id Q96542
Definition sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa
Align length 179
Score (bit) 187.0
E-value 4.0e-47
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946091|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_G19, 5'
(624 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 187 4e-47
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 186 6e-47
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 184 2e-46
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 183 5e-46
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 183 7e-46
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai... 182 1e-45
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 182 1e-45
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha... 182 1e-45
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha... 180 5e-45
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai... 179 8e-45
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 179 8e-45
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 179 8e-45
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 179 1e-44
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 179 1e-44
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 178 2e-44
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 178 2e-44
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha... 178 2e-44
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai... 177 3e-44
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha... 177 5e-44
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 176 9e-44
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 176 1e-43
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 176 1e-43
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha... 176 1e-43
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 176 1e-43
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai... 175 1e-43
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha... 174 3e-43
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai... 173 6e-43
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 173 6e-43
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha... 173 6e-43
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha... 173 7e-43

>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
Length = 182

Score = 187 bits (475), Expect = 4e-47
Identities = 97/179 (54%), Positives = 120/179 (67%), Gaps = 9/179 (5%)
Frame = +3

Query: 105 MSASLAVSAPGCAPAELSLSQKS----FSGLKASTI--VAPKCGNPLA--VSNGSRVSAM 260
M+ S+ SA A + S +Q S F+ LK+++ V K N + SNG RV M
Sbjct: 1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM 60

Query: 261 LVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGY 437
VW P KKFETLSYLP LSSEQ+AK+VDY++R+N PC+EF+ G VYREH GY
Sbjct: 61 QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGY 120

Query: 438 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
YDGRYW MWKLPMFGC DS+ VL+E+ EC K YP AFIR++GFD KRQVQ+ F+ KP
Sbjct: 121 YDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
Length = 181

Score = 186 bits (473), Expect = 6e-47
Identities = 94/178 (52%), Positives = 119/178 (66%), Gaps = 5/178 (2%)
Frame = +3

Query: 96 MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV--SNGSRVSAML 263
MA++S+S + + SL+ F+GLK++ V K N + SNG RV M
Sbjct: 1 MASISSSAIATVNRTTSTQASLAAP-FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59

Query: 264 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYY 440
VW P KK+ETLSYLP LS E ++K++DY++R + PC+EF+ G VYREH H GYY
Sbjct: 60 VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYY 119

Query: 441 DGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
DGRYW MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD RQVQ F+V KP
Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
PE=1 SV=2
Length = 180

Score = 184 bits (468), Expect = 2e-46
Identities = 91/175 (52%), Positives = 115/175 (65%), Gaps = 5/175 (2%)
Frame = +3

Query: 105 MSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWK 272
M++S+ SA A + F+GLK+S K N + SNG RV+ M VW
Sbjct: 1 MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWP 60

Query: 273 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 449
P KKFETLSYLP L+ ++AK+VDY++R + PC+EF+ G VYREH + GYYDGR
Sbjct: 61 PIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGR 120

Query: 450 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain
1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B
PE=1 SV=1
Length = 181

Score = 183 bits (465), Expect = 5e-46
Identities = 93/174 (53%), Positives = 119/174 (68%), Gaps = 5/174 (2%)
Frame = +3

Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275
S+ L+ +A +PA+ ++ F+GLK+S V K N + SNG RVS M VW P
Sbjct: 3 SSMLSSAAVVTSPAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPP 61

Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452
KKFETLSYLP L+ ++AK+VDY++R + PC+EF+ G VYREH + GYYDGRY
Sbjct: 62 IGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain
2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B
PE=2 SV=2
Length = 181

Score = 183 bits (464), Expect = 7e-46
Identities = 93/174 (53%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
Frame = +3

Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275
S+ + +A +PA+ ++ F+GLK+S V K N + SNG RVS M VW P
Sbjct: 3 SSMFSSTAVVTSPAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPP 61

Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452
KKFETLSYLP LS ++AK+VDY++R + PC+EF+ G VYREH + GYYDGRY
Sbjct: 62 IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
Length = 180

Score = 182 bits (462), Expect = 1e-45
Identities = 96/178 (53%), Positives = 115/178 (64%), Gaps = 5/178 (2%)
Frame = +3

Query: 96 MATMSASLAVSAPGCAPAELSLSQKSF----SGLKASTIVAPKCGNPLAVSNGSRVSAML 263
MA++ AS AV P A A + +GLKA +NGSRVS M
Sbjct: 1 MASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQ 60

Query: 264 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYD 443
VW+PY+N KFETLSYLP LS + +AKQ+DY+++ + PCIEFD G+V RE GYYD
Sbjct: 61 VWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYD 120

Query: 444 GRYWVMWKLPMFGCTDSAAVLREITECAKEY-PKAFIRVLGFDAKRQVQVAGFLVQKP 614
GRYW MWKLPMFGCTDSA+VLREI EC K Y K +IR LGFD RQVQ A F+V +P
Sbjct: 121 GRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178


>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain
3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B
PE=1 SV=2
Length = 181

Score = 182 bits (462), Expect = 1e-45
Identities = 93/174 (53%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
Frame = +3

Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275
S+ L+ +A +PA+ ++ F+GLK+S V K + SNG RVS M VW P
Sbjct: 3 SSMLSSAAVVTSPAQATMVAP-FTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPP 61

Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452
KKFETLSYLP LS ++AK+VDY++R + PC+EF+ G VYREH + GYYDGRY
Sbjct: 62 IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2
Length = 181

Score = 182 bits (462), Expect = 1e-45
Identities = 92/174 (52%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
Frame = +3

Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275
S+ L+ +A +PA+ ++ F+GLK+S+ V K N + VSNG RVS M VW P
Sbjct: 3 SSMLSSAAVVTSPAQATMVAP-FTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPP 61

Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452
KKFETLSYLP L+ ++ K+VDY++R + PC+EF+ G VYREH GYYDGRY
Sbjct: 62 VGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRY 121

Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
W MWKLP+FGCTDSA VL+E+ EC EYP AFIR++GFD RQVQ F+ KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175


>sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small chain
F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1
Length = 181

Score = 180 bits (457), Expect = 5e-45
Identities = 91/174 (52%), Positives = 116/174 (66%), Gaps = 5/174 (2%)
Frame = +3

Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275
S+ L+ +A +PA+ ++ F+GLK+S V K N + SNG RVS M VW P
Sbjct: 3 SSMLSSAAVVTSPAQATMVAP-FTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVWPP 61

Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452
KKFETLSYLP L+ ++ K+VDY++R + PC+EF+ G VYREH GYYDGRY
Sbjct: 62 VGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRY 121

Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
W MWKLP+FGCTDSA VL+E+ EC EYP AFIR++GFD RQVQ F+ KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
Length = 183

Score = 179 bits (455), Expect = 8e-45
Identities = 93/177 (52%), Positives = 119/177 (67%), Gaps = 4/177 (2%)
Frame = +3

Query: 96 MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV-SNGSRVSAMLV 266
M + VSA APA+ + F+GLK+S+ V K + ++ SNG RV M V
Sbjct: 5 MISSGTVATVSADRPAPAQARMVAP-FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQV 63

Query: 267 WKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYD 443
W P KKFETLSYLP LSSE +AK+VDY++R+N+ PC+EF+ G VYRE+ GYYD
Sbjct: 64 WPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYD 123

Query: 444 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
GRYW MWKLPMFGCTDS+ VL+E+ E K YP++FIR++GFD RQVQ F+ KP
Sbjct: 124 GRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180


tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 175
Score (bit) 304.0
E-value 3.0e-81
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946091|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_G19, 5'
(624 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c... 304 3e-81
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c... 211 4e-53
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c... 209 1e-52
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c... 208 2e-52
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c... 207 4e-52
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c... 207 4e-52
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c... 206 9e-52
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c... 195 2e-48
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c... 194 5e-48
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c... 193 6e-48
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c... 193 6e-48
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c... 192 1e-47
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c... 190 7e-47
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c... 190 7e-47
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c... 190 7e-47
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c... 188 2e-46
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c... 188 2e-46
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c... 187 4e-46
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c... 187 6e-46
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c... 186 7e-46
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c... 186 1e-45
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c... 185 2e-45
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c... 184 3e-45
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c... 184 3e-45
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c... 184 5e-45
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c... 182 2e-44
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c... 182 2e-44
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c... 181 3e-44
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c... 181 4e-44
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c... 181 4e-44

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
Length = 174

Score = 304 bits (778), Expect = 3e-81
Identities = 145/175 (82%), Positives = 160/175 (91%)
Frame = +3

Query: 96 MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKP 275
MATM A++AVSAP CA A SLS KSFSGLKA+T+ APKC NPLA+SNGSR+SAMLVWKP
Sbjct: 1 MATMLAAMAVSAPSCAAAAESLS-KSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKP 59

Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYW 455
YDNKKFETLSYLP L+++QIAKQV+YMVR+ +TPCIEFD IGSVYREHFHGSGYYDGRYW
Sbjct: 60 YDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYW 119

Query: 456 VMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKPGQ 620
+MWKLPMFGCTDS +VLREI ECAKEYP AFIRVLGFDAKRQVQVAGFLV+KP Q
Sbjct: 120 IMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPSQ 174


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87740 PE=3 SV=1
Length = 179

Score = 211 bits (536), Expect = 4e-53
Identities = 102/175 (58%), Positives = 124/175 (70%), Gaps = 3/175 (1%)
Frame = +3

Query: 99 ATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPY 278
A +S S+ +A A S S K FSGLK++T+ A K +V NGSRV M VW P
Sbjct: 4 AVVSVSIVAAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPI 63

Query: 279 DNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGR 449
KFET SYLP L+ +QIAKQVD+M++QN PCIEFD +GSV R +F G SGYYDGR
Sbjct: 64 GQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGR 123

Query: 450 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
YW MWKLPMFGCTDSA VLREI EC + +P ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 124 YWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87752 PE=3 SV=1
Length = 179

Score = 209 bits (532), Expect = 1e-52
Identities = 101/175 (57%), Positives = 124/175 (70%), Gaps = 3/175 (1%)
Frame = +3

Query: 99 ATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPY 278
A +S S+ +A + S S K FSGLK++T+ A K +V NGSRV M VW P
Sbjct: 4 AVVSVSIVAAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPI 63

Query: 279 DNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGR 449
KFET SYLP L+ +QIAKQVD+M++QN PCIEFD +GSV R +F G SGYYDGR
Sbjct: 64 GQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGR 123

Query: 450 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
YW MWKLPMFGCTDSA VLREI EC + +P ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 124 YWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_221004 PE=3 SV=1
Length = 184

Score = 208 bits (530), Expect = 2e-52
Identities = 100/170 (58%), Positives = 122/170 (71%), Gaps = 3/170 (1%)
Frame = +3

Query: 114 SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 293
SL +A A + S + K+FSGLK +T+ + K AV NGSRV M VW P KF
Sbjct: 14 SLGAAASSVAASNESATVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKF 73

Query: 294 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 464
ET SYLP L+ +QIAKQVDYM++QN PCIEFD +GSV R +F G SGYYDGRYW MW
Sbjct: 74 ETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 133

Query: 465 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
KLPMFGCTDS+ VLREI EC ++P ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 134 KLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 183


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
Length = 214

Score = 207 bits (527), Expect = 4e-52
Identities = 104/179 (58%), Positives = 131/179 (73%), Gaps = 6/179 (3%)
Frame = +3

Query: 96 MATMSASLAVS-APGC--APAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLV 266
++T+ A +A+ A C AP+E S S K+FSGLK++T+ + K +V NGSRV M V
Sbjct: 36 VSTVVAPVALGGASSCVGAPSESS-SVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQV 94

Query: 267 WKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGY 437
W P KFET SYLP L+ +QIAKQVDYM++QN PCIEFD +GSV R +F G SGY
Sbjct: 95 WNPIGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGY 154

Query: 438 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
YDGRYW MWKLPMFGCTDS+ VLREI EC ++P ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 155 YDGRYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 213


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
PE=2 SV=1
Length = 184

Score = 207 bits (527), Expect = 4e-52
Identities = 99/170 (58%), Positives = 122/170 (71%), Gaps = 3/170 (1%)
Frame = +3

Query: 114 SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 293
S+ V++ A + S S K+FSGLK++T+ K +V NGSRV M VW P KF
Sbjct: 14 SVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKF 73

Query: 294 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 464
ET SYLP LS +QIA+QVDYM++QN PCIEFD +G+V R +F G SGYYDGRYW MW
Sbjct: 74 ETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMW 133

Query: 465 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
KLPMFGCTDS+ VLREI EC YP ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 134 KLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARP 183


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_225236 PE=3 SV=1
Length = 183

Score = 206 bits (524), Expect = 9e-52
Identities = 98/170 (57%), Positives = 124/170 (72%), Gaps = 3/170 (1%)
Frame = +3

Query: 114 SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 293
SLA ++P + S S K+FSGLK++T+ + + +V NGSRV M VW P KF
Sbjct: 14 SLAAASPAAVSRD-STSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKF 72

Query: 294 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 464
ET SYLP L+ ++IAKQVDYM++QN PCIEFD +GSV R +F G SGYYDGRYW MW
Sbjct: 73 ETFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 132

Query: 465 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
KLPMFGCTDS+ VLREI EC ++P ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 133 KLPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRP 182


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_115069 PE=3 SV=1
Length = 181

Score = 195 bits (495), Expect = 2e-48
Identities = 99/180 (55%), Positives = 120/180 (66%), Gaps = 7/180 (3%)
Frame = +3

Query: 96 MATMSASLAVSAP----GCAPAEL---SLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVS 254
MA+ A+ AV AP +PA S + K+FSGLK++T+ + K N +V NGSRV
Sbjct: 1 MASTVAASAVVAPTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQ 60

Query: 255 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSG 434
M VW P KFET SYLP LS + IAKQV+YM++Q PC+EFDN V R + G
Sbjct: 61 CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPG 120

Query: 435 YYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
YYDGRYW MWKLPMFGC DSA VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P
Sbjct: 121 YYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
chain OS=Lactuca sativa PE=2 SV=1
Length = 181

Score = 194 bits (492), Expect = 5e-48
Identities = 96/178 (53%), Positives = 122/178 (68%), Gaps = 5/178 (2%)
Frame = +3

Query: 96 MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV--SNGSRVSAML 263
MA++S+S + PA+ SL+ F+GLK++ V K N + SNG RV M
Sbjct: 1 MASISSSAVATVNRSTPAQASLAAP-FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59

Query: 264 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYY 440
VW P KK+ETLSYLP LS E ++K++DY++R + PC+EF+ G VYREH H GYY
Sbjct: 60 VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYY 119

Query: 441 DGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
DGRYW MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD+ RQVQ F+V KP
Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_146969 PE=3 SV=1
Length = 181

Score = 193 bits (491), Expect = 6e-48
Identities = 95/168 (56%), Positives = 115/168 (68%)
Frame = +3

Query: 111 ASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKK 290
A+ A S+ + +E S S K+FSGLK+ST+ + K + +V NGSRV M VW P K
Sbjct: 14 AAFAASSSAVSTSE-STSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTK 72

Query: 291 FETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYWVMWKL 470
FET SYLP LS + IAKQVDYM++Q PC+EFDN V R + GYYDGRYW MWKL
Sbjct: 73 FETFSYLPPLSDDAIAKQVDYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKL 132

Query: 471 PMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614
PMFGC D A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P
Sbjct: 133 PMFGCQDPAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180