DK946091 |
Clone id |
YMU02A01NGRL0011_G19 |
Library |
YMU02 |
Length |
624 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_G19. 5' end sequence. |
Accession |
DK946091 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL2Contig5 |
Sequence |
AGCTCAGGCCACAGCACCGCTCTCTTCTCCTGAGCATTCTCTCTTCTGCAGGACAATTGT AGTTCTTGCTCCTGCTAAGTTCAGGTAGTCAAGCAATGGCGACCATGTCTGCGTCTCTAG CAGTGAGCGCCCCGGGATGTGCCCCAGCAGAGCTGAGCCTCTCACAGAAGAGCTTCTCGG GCCTCAAGGCCTCCACCATCGTCGCGCCCAAGTGTGGCAATCCCCTCGCCGTTTCCAATG GCAGCCGTGTCAGCGCCATGCTGGTGTGGAAGCCGTACGACAACAAGAAGTTCGAGACTC TGTCATATCTGCCGCAGCTGAGTAGCGAGCAGATAGCAAAGCAGGTGGACTACATGGTGC GACAGAACTTTACTCCCTGCATCGAGTTCGACAACATTGGGAGCGTGTACCGGGAGCACT TCCACGGGAGCGGGTACTACGATGGGAGGTACTGGGTGATGTGGAAGCTGCCCATGTTTG GCTGCACCGACTCCGCCGCCGTGCTGCGCGAGATCACGGAGTGCGCCAAGGAGTACCCCA AGGCATTCATCCGGGTGCTCGGCTTCGATGCCAAGCGGCAAGTTCAGGTTGCTGGCTTCC TTGTCCAGAAGCCCGGCCAGTGAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q96542 |
Definition |
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa |
Align length |
179 |
Score (bit) |
187.0 |
E-value |
4.0e-47 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946091|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0011_G19, 5' (624 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 187 4e-47 sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 186 6e-47 sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 184 2e-46 sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 183 5e-46 sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 183 7e-46 sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai... 182 1e-45 sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 182 1e-45 sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha... 182 1e-45 sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha... 180 5e-45 sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai... 179 8e-45 sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 179 8e-45 sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 179 8e-45 sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 179 1e-44 sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 179 1e-44 sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 178 2e-44 sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 178 2e-44 sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha... 178 2e-44 sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai... 177 3e-44 sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha... 177 5e-44 sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 176 9e-44 sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 176 1e-43 sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 176 1e-43 sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha... 176 1e-43 sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 176 1e-43 sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai... 175 1e-43 sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha... 174 3e-43 sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai... 173 6e-43 sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 173 6e-43 sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha... 173 6e-43 sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha... 173 7e-43
>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1 Length = 182
Score = 187 bits (475), Expect = 4e-47 Identities = 97/179 (54%), Positives = 120/179 (67%), Gaps = 9/179 (5%) Frame = +3
Query: 105 MSASLAVSAPGCAPAELSLSQKS----FSGLKASTI--VAPKCGNPLA--VSNGSRVSAM 260 M+ S+ SA A + S +Q S F+ LK+++ V K N + SNG RV M Sbjct: 1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM 60
Query: 261 LVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGY 437 VW P KKFETLSYLP LSSEQ+AK+VDY++R+N PC+EF+ G VYREH GY Sbjct: 61 QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGY 120
Query: 438 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 YDGRYW MWKLPMFGC DS+ VL+E+ EC K YP AFIR++GFD KRQVQ+ F+ KP Sbjct: 121 YDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179
>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1 Length = 181
Score = 186 bits (473), Expect = 6e-47 Identities = 94/178 (52%), Positives = 119/178 (66%), Gaps = 5/178 (2%) Frame = +3
Query: 96 MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV--SNGSRVSAML 263 MA++S+S + + SL+ F+GLK++ V K N + SNG RV M Sbjct: 1 MASISSSAIATVNRTTSTQASLAAP-FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59
Query: 264 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYY 440 VW P KK+ETLSYLP LS E ++K++DY++R + PC+EF+ G VYREH H GYY Sbjct: 60 VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYY 119
Query: 441 DGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 DGRYW MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD RQVQ F+V KP Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177
>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2 Length = 180
Score = 184 bits (468), Expect = 2e-46 Identities = 91/175 (52%), Positives = 115/175 (65%), Gaps = 5/175 (2%) Frame = +3
Query: 105 MSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWK 272 M++S+ SA A + F+GLK+S K N + SNG RV+ M VW Sbjct: 1 MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWP 60
Query: 273 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 449 P KKFETLSYLP L+ ++AK+VDY++R + PC+EF+ G VYREH + GYYDGR Sbjct: 61 PIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGR 120
Query: 450 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175
>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1 Length = 181
Score = 183 bits (465), Expect = 5e-46 Identities = 93/174 (53%), Positives = 119/174 (68%), Gaps = 5/174 (2%) Frame = +3
Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275 S+ L+ +A +PA+ ++ F+GLK+S V K N + SNG RVS M VW P Sbjct: 3 SSMLSSAAVVTSPAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPP 61
Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452 KKFETLSYLP L+ ++AK+VDY++R + PC+EF+ G VYREH + GYYDGRY Sbjct: 62 IGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121
Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2 Length = 181
Score = 183 bits (464), Expect = 7e-46 Identities = 93/174 (53%), Positives = 118/174 (67%), Gaps = 5/174 (2%) Frame = +3
Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275 S+ + +A +PA+ ++ F+GLK+S V K N + SNG RVS M VW P Sbjct: 3 SSMFSSTAVVTSPAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPP 61
Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452 KKFETLSYLP LS ++AK+VDY++R + PC+EF+ G VYREH + GYYDGRY Sbjct: 62 IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121
Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1 Length = 180
Score = 182 bits (462), Expect = 1e-45 Identities = 96/178 (53%), Positives = 115/178 (64%), Gaps = 5/178 (2%) Frame = +3
Query: 96 MATMSASLAVSAPGCAPAELSLSQKSF----SGLKASTIVAPKCGNPLAVSNGSRVSAML 263 MA++ AS AV P A A + +GLKA +NGSRVS M Sbjct: 1 MASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQ 60
Query: 264 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYD 443 VW+PY+N KFETLSYLP LS + +AKQ+DY+++ + PCIEFD G+V RE GYYD Sbjct: 61 VWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYD 120
Query: 444 GRYWVMWKLPMFGCTDSAAVLREITECAKEY-PKAFIRVLGFDAKRQVQVAGFLVQKP 614 GRYW MWKLPMFGCTDSA+VLREI EC K Y K +IR LGFD RQVQ A F+V +P Sbjct: 121 GRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178
>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2 Length = 181
Score = 182 bits (462), Expect = 1e-45 Identities = 93/174 (53%), Positives = 118/174 (67%), Gaps = 5/174 (2%) Frame = +3
Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275 S+ L+ +A +PA+ ++ F+GLK+S V K + SNG RVS M VW P Sbjct: 3 SSMLSSAAVVTSPAQATMVAP-FTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPP 61
Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452 KKFETLSYLP LS ++AK+VDY++R + PC+EF+ G VYREH + GYYDGRY Sbjct: 62 IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121
Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2 Length = 181
Score = 182 bits (462), Expect = 1e-45 Identities = 92/174 (52%), Positives = 118/174 (67%), Gaps = 5/174 (2%) Frame = +3
Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275 S+ L+ +A +PA+ ++ F+GLK+S+ V K N + VSNG RVS M VW P Sbjct: 3 SSMLSSAAVVTSPAQATMVAP-FTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPP 61
Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452 KKFETLSYLP L+ ++ K+VDY++R + PC+EF+ G VYREH GYYDGRY Sbjct: 62 VGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRY 121
Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 W MWKLP+FGCTDSA VL+E+ EC EYP AFIR++GFD RQVQ F+ KP Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175
>sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1 Length = 181
Score = 180 bits (457), Expect = 5e-45 Identities = 91/174 (52%), Positives = 116/174 (66%), Gaps = 5/174 (2%) Frame = +3
Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275 S+ L+ +A +PA+ ++ F+GLK+S V K N + SNG RVS M VW P Sbjct: 3 SSMLSSAAVVTSPAQATMVAP-FTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVWPP 61
Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452 KKFETLSYLP L+ ++ K+VDY++R + PC+EF+ G VYREH GYYDGRY Sbjct: 62 VGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRY 121
Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 W MWKLP+FGCTDSA VL+E+ EC EYP AFIR++GFD RQVQ F+ KP Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175
>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1 Length = 183
Score = 179 bits (455), Expect = 8e-45 Identities = 93/177 (52%), Positives = 119/177 (67%), Gaps = 4/177 (2%) Frame = +3
Query: 96 MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV-SNGSRVSAMLV 266 M + VSA APA+ + F+GLK+S+ V K + ++ SNG RV M V Sbjct: 5 MISSGTVATVSADRPAPAQARMVAP-FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQV 63
Query: 267 WKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYD 443 W P KKFETLSYLP LSSE +AK+VDY++R+N+ PC+EF+ G VYRE+ GYYD Sbjct: 64 WPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYD 123
Query: 444 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 GRYW MWKLPMFGCTDS+ VL+E+ E K YP++FIR++GFD RQVQ F+ KP Sbjct: 124 GRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q43110 |
Definition |
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata |
Align length |
175 |
Score (bit) |
304.0 |
E-value |
3.0e-81 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946091|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0011_G19, 5' (624 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c... 304 3e-81 tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c... 211 4e-53 tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c... 209 1e-52 tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c... 208 2e-52 tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c... 207 4e-52 tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c... 207 4e-52 tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c... 206 9e-52 tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c... 195 2e-48 tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c... 194 5e-48 tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c... 193 6e-48 tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c... 193 6e-48 tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c... 192 1e-47 tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c... 190 7e-47 tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c... 190 7e-47 tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c... 190 7e-47 tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c... 188 2e-46 tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c... 188 2e-46 tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c... 187 4e-46 tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c... 187 6e-46 tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c... 186 7e-46 tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c... 186 1e-45 tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c... 185 2e-45 tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c... 184 3e-45 tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c... 184 3e-45 tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c... 184 5e-45 tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c... 182 2e-44 tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c... 182 2e-44 tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c... 181 3e-44 tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c... 181 4e-44 tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c... 181 4e-44
>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1 Length = 174
Score = 304 bits (778), Expect = 3e-81 Identities = 145/175 (82%), Positives = 160/175 (91%) Frame = +3
Query: 96 MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKP 275 MATM A++AVSAP CA A SLS KSFSGLKA+T+ APKC NPLA+SNGSR+SAMLVWKP Sbjct: 1 MATMLAAMAVSAPSCAAAAESLS-KSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKP 59
Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYW 455 YDNKKFETLSYLP L+++QIAKQV+YMVR+ +TPCIEFD IGSVYREHFHGSGYYDGRYW Sbjct: 60 YDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYW 119
Query: 456 VMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKPGQ 620 +MWKLPMFGCTDS +VLREI ECAKEYP AFIRVLGFDAKRQVQVAGFLV+KP Q Sbjct: 120 IMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPSQ 174
>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small chain OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_87740 PE=3 SV=1 Length = 179
Score = 211 bits (536), Expect = 4e-53 Identities = 102/175 (58%), Positives = 124/175 (70%), Gaps = 3/175 (1%) Frame = +3
Query: 99 ATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPY 278 A +S S+ +A A S S K FSGLK++T+ A K +V NGSRV M VW P Sbjct: 4 AVVSVSIVAAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPI 63
Query: 279 DNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGR 449 KFET SYLP L+ +QIAKQVD+M++QN PCIEFD +GSV R +F G SGYYDGR Sbjct: 64 GQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGR 123
Query: 450 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 YW MWKLPMFGCTDSA VLREI EC + +P ++RVLGFD+K+QVQ+ GFLV +P Sbjct: 124 YWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178
>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small chain OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_87752 PE=3 SV=1 Length = 179
Score = 209 bits (532), Expect = 1e-52 Identities = 101/175 (57%), Positives = 124/175 (70%), Gaps = 3/175 (1%) Frame = +3
Query: 99 ATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPY 278 A +S S+ +A + S S K FSGLK++T+ A K +V NGSRV M VW P Sbjct: 4 AVVSVSIVAAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPI 63
Query: 279 DNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGR 449 KFET SYLP L+ +QIAKQVD+M++QN PCIEFD +GSV R +F G SGYYDGR Sbjct: 64 GQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGR 123
Query: 450 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 YW MWKLPMFGCTDSA VLREI EC + +P ++RVLGFD+K+QVQ+ GFLV +P Sbjct: 124 YWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178
>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small chain OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_221004 PE=3 SV=1 Length = 184
Score = 208 bits (530), Expect = 2e-52 Identities = 100/170 (58%), Positives = 122/170 (71%), Gaps = 3/170 (1%) Frame = +3
Query: 114 SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 293 SL +A A + S + K+FSGLK +T+ + K AV NGSRV M VW P KF Sbjct: 14 SLGAAASSVAASNESATVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKF 73
Query: 294 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 464 ET SYLP L+ +QIAKQVDYM++QN PCIEFD +GSV R +F G SGYYDGRYW MW Sbjct: 74 ETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 133
Query: 465 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 KLPMFGCTDS+ VLREI EC ++P ++RVLGFD+K+QVQ+ GFLV +P Sbjct: 134 KLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 183
>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small chain (Fragment) OS=Physcomitrella patens PE=2 SV=1 Length = 214
Score = 207 bits (527), Expect = 4e-52 Identities = 104/179 (58%), Positives = 131/179 (73%), Gaps = 6/179 (3%) Frame = +3
Query: 96 MATMSASLAVS-APGC--APAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLV 266 ++T+ A +A+ A C AP+E S S K+FSGLK++T+ + K +V NGSRV M V Sbjct: 36 VSTVVAPVALGGASSCVGAPSESS-SVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQV 94
Query: 267 WKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGY 437 W P KFET SYLP L+ +QIAKQVDYM++QN PCIEFD +GSV R +F G SGY Sbjct: 95 WNPIGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGY 154
Query: 438 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 YDGRYW MWKLPMFGCTDS+ VLREI EC ++P ++RVLGFD+K+QVQ+ GFLV +P Sbjct: 155 YDGRYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 213
>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small chain OS=Physcomitrella patens subsp. patens GN=PprbcS1 PE=2 SV=1 Length = 184
Score = 207 bits (527), Expect = 4e-52 Identities = 99/170 (58%), Positives = 122/170 (71%), Gaps = 3/170 (1%) Frame = +3
Query: 114 SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 293 S+ V++ A + S S K+FSGLK++T+ K +V NGSRV M VW P KF Sbjct: 14 SVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKF 73
Query: 294 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 464 ET SYLP LS +QIA+QVDYM++QN PCIEFD +G+V R +F G SGYYDGRYW MW Sbjct: 74 ETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMW 133
Query: 465 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 KLPMFGCTDS+ VLREI EC YP ++RVLGFD+K+QVQ+ GFLV +P Sbjct: 134 KLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARP 183
>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small chain OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_225236 PE=3 SV=1 Length = 183
Score = 206 bits (524), Expect = 9e-52 Identities = 98/170 (57%), Positives = 124/170 (72%), Gaps = 3/170 (1%) Frame = +3
Query: 114 SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 293 SLA ++P + S S K+FSGLK++T+ + + +V NGSRV M VW P KF Sbjct: 14 SLAAASPAAVSRD-STSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKF 72
Query: 294 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 464 ET SYLP L+ ++IAKQVDYM++QN PCIEFD +GSV R +F G SGYYDGRYW MW Sbjct: 73 ETFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 132
Query: 465 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 KLPMFGCTDS+ VLREI EC ++P ++RVLGFD+K+QVQ+ GFLV +P Sbjct: 133 KLPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRP 182
>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small chain OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_115069 PE=3 SV=1 Length = 181
Score = 195 bits (495), Expect = 2e-48 Identities = 99/180 (55%), Positives = 120/180 (66%), Gaps = 7/180 (3%) Frame = +3
Query: 96 MATMSASLAVSAP----GCAPAEL---SLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVS 254 MA+ A+ AV AP +PA S + K+FSGLK++T+ + K N +V NGSRV Sbjct: 1 MASTVAASAVVAPTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQ 60
Query: 255 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSG 434 M VW P KFET SYLP LS + IAKQV+YM++Q PC+EFDN V R + G Sbjct: 61 CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPG 120
Query: 435 YYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 YYDGRYW MWKLPMFGC DSA VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P Sbjct: 121 YYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180
>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small chain OS=Lactuca sativa PE=2 SV=1 Length = 181
Score = 194 bits (492), Expect = 5e-48 Identities = 96/178 (53%), Positives = 122/178 (68%), Gaps = 5/178 (2%) Frame = +3
Query: 96 MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV--SNGSRVSAML 263 MA++S+S + PA+ SL+ F+GLK++ V K N + SNG RV M Sbjct: 1 MASISSSAVATVNRSTPAQASLAAP-FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59
Query: 264 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYY 440 VW P KK+ETLSYLP LS E ++K++DY++R + PC+EF+ G VYREH H GYY Sbjct: 60 VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYY 119
Query: 441 DGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 DGRYW MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD+ RQVQ F+V KP Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177
>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small chain OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_146969 PE=3 SV=1 Length = 181
Score = 193 bits (491), Expect = 6e-48 Identities = 95/168 (56%), Positives = 115/168 (68%) Frame = +3
Query: 111 ASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKK 290 A+ A S+ + +E S S K+FSGLK+ST+ + K + +V NGSRV M VW P K Sbjct: 14 AAFAASSSAVSTSE-STSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTK 72
Query: 291 FETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYWVMWKL 470 FET SYLP LS + IAKQVDYM++Q PC+EFDN V R + GYYDGRYW MWKL Sbjct: 73 FETFSYLPPLSDDAIAKQVDYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKL 132
Query: 471 PMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 614 PMFGC D A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P Sbjct: 133 PMFGCQDPAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180
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