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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946098
Clone id YMU02A01NGRL0011_H04
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_H04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACAGAGAGGGAGAGAGAAAAAGAGAGAAAAAGAGAGAGAGGAGATAAGATGTCGTGCTGC
GATGGTAACTGTGGGTGCGGCGCAGACTGTCAATGCGCCGGCGGCTGCGAGGGGTGCGGC
CGAACTGACAGCCTTGTGCTGTCGAAGGAGGCGCCTCTCGTTCTCAGTGCCACTGCCTCC
GTCTGCCCCGGCTATGAAAGGGCTCTAGGTTTCGGAGTGGAGAACATCTCTGGGTATCTT
GGCTCTCCTACTTCTTGTTTCGCTCTCAACTGAGCTTAAGGTAGCCTAGTACAAGGGGTT
GCCTTAATAACACCAAAAATAATGTATTTGTATTTAGTTAATAGTCAGTCGTGCAATTAA
CATCCATGGATCGCTTGTACATAGTATGCTCACCTTTGTAATCTTGGAATTTGGTAATGA
TAATGATAATGGCTTAAGCCATGCCATAAAATGCAACACCTTTAGCTTCAAAAAAAAAAA
AAAAAAAAAGAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8N4Y2
Definition sp|Q8N4Y2|EFC4A_HUMAN EF-hand calcium-binding domain-containing protein 4A OS=Homo sapiens
Align length 41
Score (bit) 30.0
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946098|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_H04, 5'
         (469 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N4Y2|EFC4A_HUMAN EF-hand calcium-binding domain-containing ...    30   5.3  
sp|Q5U3U6|BORA_DANRE Protein aurora borealis OS=Danio rerio GN=b...    30   6.9  

>sp|Q8N4Y2|EFC4A_HUMAN EF-hand calcium-binding domain-containing
           protein 4A OS=Homo sapiens GN=EFCAB4A PE=2 SV=1
          Length = 294

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 20/41 (48%), Positives = 23/41 (56%)
 Frame = -1

Query: 241 QDTQRCSPLRNLEPFHSRGRRRQWH*EREAPPSTAQGCQFG 119
           QD +R   LR  E    RGRR Q H ERE+ P+TA G   G
Sbjct: 251 QDLERAG-LRQRE---RRGRRLQEHAERESQPATATGAAQG 287


>sp|Q5U3U6|BORA_DANRE Protein aurora borealis OS=Danio rerio GN=bora
           PE=2 SV=1
          Length = 551

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 259 NKK*ESQDTQRCSPLRNLEPFHSRGRRR 176
           N+  ES   + CSP+R+  PF SR R R
Sbjct: 318 NRSGESPLVEGCSPIRSCSPFQSRPRNR 345
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946098|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_H04, 5'
         (469 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******