DK946123
Clone id YMU02A01NGRL0011_I15
Library
Length 537
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_I15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGTGTATCGTAGCGGGTATAGT
TTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAGTTGAGGGATCGTATCTCG
GCTAAATTAACTGAAAGAAAAAAACTCTATCTTCGCAGAAAATATGTGTTTTCTTATTAT
TTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATTCATTTCATGAACTAGGG
AAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATACTTGGTTTAATTTCTAC
TTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTCTAAGATAGCTGACTCAT
CGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGAATAAATAAATCCGGGTT
TGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTCGTTTCAACAACTCGGTG
AGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 31.2
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946123|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_I15, 5'
(469 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 31 2.4
sp|Q6GN91|NT5D3_XENLA 5'-nucleotidase domain-containing protein ... 30 4.1
sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus ... 30 4.1
sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens ... 30 4.1
sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN... 30 4.1
sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegic... 30 5.3
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 30 5.3
sp|Q86UY8|NT5D3_HUMAN 5'-nucleotidase domain-containing protein ... 30 6.9
sp|Q3UHB1|NT5D3_MOUSE 5'-nucleotidase domain-containing protein ... 29 9.1

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
Length = 455

Score = 31.2 bits (69), Expect = 2.4
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Frame = +1

Query: 250 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 396
L+ T+ +++KE+N+W+++ D + RI ++ K GIN SGF+ ++E
Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|Q6GN91|NT5D3_XENLA 5'-nucleotidase domain-containing protein 3
OS=Xenopus laevis GN=nt5dc3 PE=2 SV=1
Length = 499

Score = 30.4 bits (67), Expect = 4.1
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1

Query: 127 TYFLRR*SFFLSVNLAEIRS-LNYQNHCETSHTFTTKLYPLRY 2
TYFLRR S F + + + S LNY H HTF K PL++
Sbjct: 435 TYFLRRLSRFADIYMESLSSLLNYDLH----HTFYPKRTPLQH 473


>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
GN=Mmp2 PE=2 SV=1
Length = 662

Score = 30.4 bits (67), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2

Query: 147 WRNNKKTHIFCEDRVFFFQLI*PRYDPSTIKITARRVTLLPLN 19
W NKKT+IF D+ + + + + DP K+ A +P N
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens
GN=MMP2 PE=1 SV=2
Length = 660

Score = 30.4 bits (67), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2

Query: 147 WRNNKKTHIFCEDRVFFFQLI*PRYDPSTIKITARRVTLLPLN 19
W NKKT+IF D+ + + + + DP K+ A +P N
Sbjct: 574 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 616


>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus
GN=MMP2 PE=2 SV=1
Length = 661

Score = 30.4 bits (67), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2

Query: 147 WRNNKKTHIFCEDRVFFFQLI*PRYDPSTIKITARRVTLLPLN 19
W NKKT+IF D+ + + + + DP K+ A +P N
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 617


>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus
GN=Mmp2 PE=2 SV=2
Length = 662

Score = 30.0 bits (66), Expect = 5.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2

Query: 147 WRNNKKTHIFCEDRVFFFQLI*PRYDPSTIKITARRVTLLPLN 19
W NKKT+IF D+ + + + + DP K+ A +P N
Sbjct: 576 WSKNKKTYIFSGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
burgdorferi GN=recB PE=3 SV=1
Length = 1169

Score = 30.0 bits (66), Expect = 5.3
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1

Query: 220 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 384
IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|Q86UY8|NT5D3_HUMAN 5'-nucleotidase domain-containing protein 3
OS=Homo sapiens GN=NT5DC3 PE=2 SV=1
Length = 548

Score = 29.6 bits (65), Expect = 6.9
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1

Query: 127 TYFLRR*SFFLSVNLAEIRS-LNYQNHCETSHTFTTKLYPLRY 2
TYFLRR S F + +A + LNY + SHTF + PL++
Sbjct: 487 TYFLRRLSRFADIYMASLSCLLNY----DVSHTFYPRRTPLQH 525


>sp|Q3UHB1|NT5D3_MOUSE 5'-nucleotidase domain-containing protein 3
OS=Mus musculus GN=Nt5dc3 PE=2 SV=1
Length = 546

Score = 29.3 bits (64), Expect = 9.1
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1

Query: 127 TYFLRR*SFFLSVNLAEIRS-LNYQNHCETSHTFTTKLYPLRY 2
TYFLRR S F + +A + LNY H HTF + PL++
Sbjct: 485 TYFLRRLSRFADIYMASLSCLLNYDVH----HTFYPRRTPLQH 523


tr_hit_id Q9TY98
Definition tr|Q9TY98|Q9TY98_PLAF7 Putative uncharacterized protein PFB0190c OS=Plasmodium falciparum (isolate 3D7)
Align length 108
Score (bit) 33.9
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946123|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_I15, 5'
(469 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9TY98|Q9TY98_PLAF7 Putative uncharacterized protein PFB0190c... 34 4.2
tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty... 33 9.3

>tr|Q9TY98|Q9TY98_PLAF7 Putative uncharacterized protein PFB0190c
OS=Plasmodium falciparum (isolate 3D7) GN=PFB0190c PE=4
SV=1
Length = 2295

Score = 33.9 bits (76), Expect = 4.2
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = -2

Query: 399 MFNNLDKPGFIYSNFLSQIYSLRFSDDESAILDVYP*IFFFIYLPGSRN*TKYFLGYQNN 220
+ ++++ + Y N L + YSL+ ++ ++Y + + I L ++N KYF+ + NN
Sbjct: 179 ILKSINRNNYNYFNMLDE-YSLQTKLNK----EMYDSLNYLIRLMNNKNSRKYFISFSNN 233

Query: 219 SASSLSSLVHEMNE---*RD*LIYL*FWRNNKKTHIFCEDRVFFFQLI 85
+ + ++MNE R ++ L W NN K C D+ F I
Sbjct: 234 EKKKI--IKNDMNENIYIRHFIVSLFRWYNNFKLIETCFDKNNFIYYI 279


>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
Length = 955

Score = 32.7 bits (73), Expect = 9.3
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1

Query: 241 ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFVKIIEHLF 405
I+G ++ SGE+N E ++ DS +T IN+GK IN S + I F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796