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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946136
Clone id YMU02A01NGRL0011_J12
Library
Length 345
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_J12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATACAGCCCTATCTATGTCCCAGAGGAATGGTCAACTTCTGGTGATAGCTATGCTGCAG
GTCCTACTGGATTGGCTATCTGGGCAGTTACCCTCGGCGCTATCTTGTTGGGTGGTGCCC
TCTTAGTGTACAACACCAGTGCCCTTGCTCAATGATTGCTTTTGTATGTTAATGAGGTGA
ATCCTGAATTCTGACACACTATGCGTCTTCCATGTCTCACCTATTGCCTTGTATATTCTG
ACAGTCATGAGAATGAAAAAGTGTAGCTCCTTGTGAAGAAAAAAAAAAAAAAAAAGAAAA
AAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P06183
Definition sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum
Align length 50
Score (bit) 62.8
E-value 5.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946136|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_J12, 5'
         (275 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl...    63   5e-10
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl...    63   5e-10
sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl...    62   7e-10
sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl...    62   1e-09
sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl...    61   2e-09
sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl...    61   2e-09
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl...    60   3e-09
sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewa...    30   4.9  
sp|Q6AXP3|CO033_RAT Uncharacterized protein C15orf33 homolog OS=...    29   8.4  

>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 31/50 (62%), Positives = 32/50 (64%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 152
           YSPIY  +EWS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 89  YSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138


>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 31/50 (62%), Positives = 32/50 (64%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 152
           YSPIY  +EWS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 89  YSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138


>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1
          Length = 141

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 31/50 (62%), Positives = 32/50 (64%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 152
           YSPIY  +EWS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 92  YSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141


>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1
          Length = 140

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 31/50 (62%), Positives = 31/50 (62%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 152
           YSPIY   EWS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 91  YSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140


>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1
          Length = 140

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 30/50 (60%), Positives = 32/50 (64%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 152
           YSPIY  EEW+ +GD YA G TGL IWAVT           VYNTSALAQ
Sbjct: 91  YSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140


>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1
          Length = 138

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 29/49 (59%), Positives = 31/49 (63%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 149
           YSPIY PEEWS SGD Y  G TGL +WAVT           VY+TSALA
Sbjct: 89  YSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137


>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1
          Length = 136

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 29/50 (58%), Positives = 32/50 (64%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 152
           YSPIY  ++WS SGD Y  G TGLAIWAVT           V+NTSALAQ
Sbjct: 87  YSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136


>sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC
           OS=Shewanella denitrificans (strain OS217 / ATCC
           BAA-1090 / DSM 15013) GN=thiC PE=3 SV=1
          Length = 686

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 273 QGATLFHSHDCQNIQGNR*DMEDA*CVRI 187
           QG+ L+HS D   I  N+ D +DA  VR+
Sbjct: 651 QGSALYHSIDSSGINDNKNDQQDASVVRV 679


>sp|Q6AXP3|CO033_RAT Uncharacterized protein C15orf33 homolog
           OS=Rattus norvegicus PE=2 SV=2
          Length = 573

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -1

Query: 272 KELHFFILMTVRIYKAIGETWKTHSVSEFRIHLIN 168
           K+++ ++L T  + + + + WKTH +S+  I L++
Sbjct: 158 KQIYLYVLRTHNLEEKVFKVWKTHILSDCSIALLH 192
tr_hit_id Q6XW17
Definition tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=Triticum aestivum
Align length 49
Score (bit) 66.2
E-value 8.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946136|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_J12, 5'
         (275 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=...    66   8e-10
tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein...    65   2e-09
tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subs...    64   5e-09
tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryz...    64   5e-09
tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragme...    64   5e-09
tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza...    64   5e-09
tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza...    64   5e-09
tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2...    64   5e-09
tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edu...    63   7e-09
tr|A8VIE2|A8VIE2_PROJU Chloroplast photosystem II PsbR OS=Prosop...    63   9e-09
tr|A5AWT3|A5AWT3_VITVI Putative uncharacterized protein (Chromos...    63   9e-09
tr|Q84XP6|Q84XP6_BRARP Photosystem II 10kDa polypeptide (Fragmen...    62   1e-08
tr|Q6ZF71|Q6ZF71_ORYSJ Putative Photosystem II 10 kDa polypeptid...    62   1e-08
tr|Q6V7X5|Q6V7X5_TRIPR 10 kDa photosystem II polypeptide OS=Trif...    62   1e-08
tr|B8B7B0|B8B7B0_ORYSI Putative uncharacterized protein OS=Oryza...    62   1e-08
tr|A3BGK2|A3BGK2_ORYSJ Putative uncharacterized protein OS=Oryza...    62   1e-08
tr|A1YN01|A1YN01_BRACM Photosystem II 10kDa polytpeptide OS=Bras...    62   1e-08
tr|Q1H8R2|Q1H8R2_CHERU Photosystem II 10 kDa polypeptide, chloro...    62   1e-08
tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide, chloro...    62   2e-08
tr|Q8GV53|Q8GV53_9LILI Photosystem II 10 kDa protein OS=Xerophyt...    62   2e-08
tr|Q0WWI7|Q0WWI7_ARATH PSII-R protein OS=Arabidopsis thaliana GN...    62   2e-08
tr|A1YMZ6|A1YMZ6_BRACM Chloroplast photosystem II 10 kDa polypep...    62   2e-08
tr|Q8H4P7|Q8H4P7_ORYSJ Os07g0147500 protein OS=Oryza sativa subs...    61   3e-08
tr|B8B7A9|B8B7A9_ORYSI Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Popul...    60   4e-08
tr|A9PHU8|A9PHU8_POPTR Putative uncharacterized protein OS=Popul...    60   6e-08
tr|A9PJW8|A9PJW8_POPJC Putative uncharacterized protein OS=Popul...    59   9e-08
tr|A9PH94|A9PH94_POPTR Putative uncharacterized protein OS=Popul...    59   9e-08
tr|A9PAP8|A9PAP8_POPTR Putative uncharacterized protein OS=Popul...    59   9e-08
tr|Q2PXN6|Q2PXN6_ARAHY Chloroplast photosystem II 10 kDa protein...    59   1e-07

>tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment)
           OS=Triticum aestivum PE=2 SV=1
          Length = 99

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 32/49 (65%), Positives = 32/49 (65%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 149
           YSPIY PEEWS SGD YA G TGL IWAVT           VYNTSALA
Sbjct: 50  YSPIYTPEEWSESGDRYAGGTTGLLIWAVTLAGLLGGGVLLVYNTSALA 98


>tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein
           OS=Agave tequilana PE=2 SV=1
          Length = 144

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 31/50 (62%), Positives = 32/50 (64%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 152
           YSPIY PEEWS SGD Y  G TGL IWA+T           VYNTSALAQ
Sbjct: 95  YSPIYSPEEWSPSGDVYVGGTTGLLIWAITLAGLLAGGALLVYNTSALAQ 144


>tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subsp.
           japonica GN=P0556A11.19 PE=2 SV=1
          Length = 130

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 30/49 (61%), Positives = 32/49 (65%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 149
           YSPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 81  YSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 129


>tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryza
           sativa PE=2 SV=1
          Length = 126

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 30/49 (61%), Positives = 32/49 (65%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 149
           YSPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 77  YSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 125


>tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 128

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 30/49 (61%), Positives = 32/49 (65%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 149
           YSPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 79  YSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 127


>tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025317 PE=4 SV=1
          Length = 704

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 30/49 (61%), Positives = 32/49 (65%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 149
           YSPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 655 YSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 703


>tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_28175 PE=4 SV=1
          Length = 130

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 30/49 (61%), Positives = 32/49 (65%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 149
           YSPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 81  YSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 129


>tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2
           SV=1
          Length = 141

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 32/50 (64%), Positives = 32/50 (64%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 152
           YSPIY  EEWS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 92  YSPIYNEEEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141


>tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edulis
           PE=2 SV=1
          Length = 130

 Score = 63.2 bits (152), Expect = 7e-09
 Identities = 30/49 (61%), Positives = 31/49 (63%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 149
           YSPIY PEEWS SGD Y  G TGL IWA+T           VYNTSALA
Sbjct: 81  YSPIYSPEEWSPSGDVYVGGTTGLLIWAITLAGLLGGGALLVYNTSALA 129


>tr|A8VIE2|A8VIE2_PROJU Chloroplast photosystem II PsbR OS=Prosopsis
           juliflora GN=PsbR PE=2 SV=1
          Length = 139

 Score = 62.8 bits (151), Expect = 9e-09
 Identities = 31/50 (62%), Positives = 32/50 (64%)
 Frame = +3

Query: 3   YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 152
           YSPIY  E+WS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 90  YSPIYNTEDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ 139