DK946141
Clone id YMU02A01NGRL0011_J19
Library
Length 411
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_J19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAGTGCGGTTCAAGGTTGTGAAGGTATCTGGAGTGTCTCTCCTTGCCCTTTTCAAGGAAA
AGAAGGAGAAACCAAGGTCTTAAGTTTTGAGAGGATATGTGAAGGTCCAGCAGGACTTGT
ACCTTATTGATTAGCTTCCTGGGAATGTTCAGGAGAGATCATCACGAAAATTTTGTTAAT
CTCATGACATGAGCCAGCTGCTTCTTTTCGATGCATGCGTTTCCTTCTTTTGAACCATGG
GATGGAGAATCATTGTGTCAGTGAAGGTAAAGATACTTTGTCTGTCCTCATTTCTTTACT
GATATAGAAGGGATAGTTTCATTGCTCANAAAAAAAAAAAAAAAAAAAAAAAAAAAACAC
GTGTCCCCCGCCTCCCCCCTCGAAAATCTTTCTACACCATTCTTTTGGCGC
■■Homology search results ■■ -
sp_hit_id P46297
Definition sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa
Align length 26
Score (bit) 52.0
E-value 9.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946141|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_J19, 5'
(329 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria anana... 52 9e-07
sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esul... 52 9e-07
sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis... 52 9e-07
sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis... 52 9e-07
sp|P32827|RS23_YEAST 40S ribosomal protein S23 OS=Saccharomyces ... 50 4e-06
sp|Q6YIA2|RS23_SACCA 40S ribosomal protein S23 OS=Saccharomyces ... 50 4e-06
sp|Q6YIA3|RS23_SACBA 40S ribosomal protein S23 OS=Saccharomyces ... 50 4e-06
sp|Q6FLA8|RS23_CANGA 40S ribosomal protein S23 OS=Candida glabra... 50 4e-06
sp|Q9HE74|RS23_NEUCR 40S ribosomal protein S23 OS=Neurospora cra... 49 1e-05
sp|Q873W8|RS23_ASPFU 40S ribosomal protein S23 OS=Aspergillus fu... 49 1e-05
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera fru... 46 5e-05
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardan... 46 5e-05
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila mel... 46 5e-05
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor va... 46 5e-05
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rube... 45 1e-04
sp|P79057|RS23_SCHPO 40S ribosomal protein S23 OS=Schizosaccharo... 44 3e-04
sp|P62268|RS23_RAT 40S ribosomal protein S23 OS=Rattus norvegicu... 44 3e-04
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 OS=Sus scrofa GN=RP... 44 3e-04
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 OS=Mus musculus G... 44 3e-04
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 OS=Ictalurus punc... 44 3e-04
sp|P62266|RS23_HUMAN 40S ribosomal protein S23 OS=Homo sapiens G... 44 3e-04
sp|P62298|RS23_CHILA 40S ribosomal protein S23 OS=Chinchilla lan... 44 3e-04
sp|Q3T199|RS23_BOVIN 40S ribosomal protein S23 OS=Bos taurus GN=... 44 3e-04
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 OS=Caenorhabditis... 42 0.001
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 OS=Brugia malayi ... 42 0.001
sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23 OS=Ciona intestin... 39 0.006
sp|P06147|RS12_TETTH 40S ribosomal protein S12 OS=Tetrahymena th... 38 0.014
sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23 OS=Gillichthys mi... 37 0.024
sp|A3MXZ4|RS12_PYRCJ 30S ribosomal protein S12P OS=Pyrobaculum c... 37 0.024
sp|A1RSE4|RS12_PYRIL 30S ribosomal protein S12P OS=Pyrobaculum i... 37 0.031

>sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa
GN=RPS23 PE=2 SV=1
Length = 142

Score = 52.0 bits (123), Expect = 9e-07
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 117 VRFKVVKVSGVSLLALFKEKKEKPRS 142


>sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esula
GN=RPS23 PE=2 SV=1
Length = 142

Score = 52.0 bits (123), Expect = 9e-07
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 117 VRFKVVKVSGVSLLALFKEKKEKPRS 142


>sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis
thaliana GN=RPS23B PE=2 SV=2
Length = 142

Score = 52.0 bits (123), Expect = 9e-07
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 117 VRFKVVKVSGVSLLALFKEKKEKPRS 142


>sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis
thaliana GN=RPS23A PE=2 SV=2
Length = 142

Score = 52.0 bits (123), Expect = 9e-07
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 117 VRFKVVKVSGVSLLALFKEKKEKPRS 142


>sp|P32827|RS23_YEAST 40S ribosomal protein S23 OS=Saccharomyces
cerevisiae GN=RPS23A PE=1 SV=1
Length = 145

Score = 50.1 bits (118), Expect = 4e-06
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct: 120 VRFKVVKVSGVSLLALWKEKKEKPRS 145


>sp|Q6YIA2|RS23_SACCA 40S ribosomal protein S23 OS=Saccharomyces
castellii GN=RPS23A PE=3 SV=1
Length = 145

Score = 50.1 bits (118), Expect = 4e-06
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct: 120 VRFKVVKVSGVSLLALWKEKKEKPRS 145


>sp|Q6YIA3|RS23_SACBA 40S ribosomal protein S23 OS=Saccharomyces
bayanus GN=RPS23A PE=3 SV=1
Length = 145

Score = 50.1 bits (118), Expect = 4e-06
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct: 120 VRFKVVKVSGVSLLALWKEKKEKPRS 145


>sp|Q6FLA8|RS23_CANGA 40S ribosomal protein S23 OS=Candida glabrata
GN=RPS23 PE=3 SV=1
Length = 145

Score = 50.1 bits (118), Expect = 4e-06
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct: 120 VRFKVVKVSGVSLLALWKEKKEKPRS 145


>sp|Q9HE74|RS23_NEUCR 40S ribosomal protein S23 OS=Neurospora crassa
GN=rps-23 PE=3 SV=1
Length = 145

Score = 48.5 bits (114), Expect = 1e-05
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct: 120 VRFKVVKVSGVGLLALWKEKKEKPRS 145


>sp|Q873W8|RS23_ASPFU 40S ribosomal protein S23 OS=Aspergillus
fumigatus GN=rps23 PE=2 SV=1
Length = 145

Score = 48.5 bits (114), Expect = 1e-05
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct: 120 VRFKVVKVSGVGLLALWKEKKEKPRS 145


tr_hit_id Q8VYX8
Definition tr|Q8VYX8|Q8VYX8_PEA Ultraviolet-B-inducible ribosomal protein (Fragment) OS=Pisum sativum
Align length 26
Score (bit) 52.0
E-value 1.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946141|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_J19, 5'
(329 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8VYX8|Q8VYX8_PEA Ultraviolet-B-inducible ribosomal protein (... 52 1e-05
tr|Q8L4F2|Q8L4F2_ORYSJ Os03g0818400 protein OS=Oryza sativa subs... 52 1e-05
tr|Q8H6J0|Q8H6J0_MAIZE Putative 40S ribosomal protein OS=Zea may... 52 1e-05
tr|Q677G5|Q677G5_HYAOR 40S ribosomal protein S23 (Fragment) OS=H... 52 1e-05
tr|Q5YJP7|Q5YJP7_HYAOR 40S ribosomal protein S23 (Fragment) OS=H... 52 1e-05
tr|Q38HT5|Q38HT5_SOLTU Putative uncharacterized protein OS=Solan... 52 1e-05
tr|Q2Q9T1|Q2Q9T1_PICMA 40S ribosomal protein (Fragment) OS=Picea... 52 1e-05
tr|Q1H5G2|Q1H5G2_ARATH At3g09680 OS=Arabidopsis thaliana PE=2 SV=1 52 1e-05
tr|Q0JHZ3|Q0JHZ3_ORYSJ Os01g0834600 protein (Fragment) OS=Oryza ... 52 1e-05
tr|B8LKM8|B8LKM8_PICSI Putative uncharacterized protein OS=Picea... 52 1e-05
tr|B7FHD2|B7FHD2_MEDTR Putative uncharacterized protein OS=Medic... 52 1e-05
tr|B6TI93|B6TI93_MAIZE 40S ribosomal protein S23 OS=Zea mays PE=... 52 1e-05
tr|B6T6W0|B6T6W0_MAIZE 40S ribosomal protein S23 OS=Zea mays PE=... 52 1e-05
tr|B4FMD3|B4FMD3_MAIZE Putative uncharacterized protein OS=Zea m... 52 1e-05
tr|B4FBY5|B4FBY5_MAIZE 40S ribosomal protein S23 OS=Zea mays PE=... 52 1e-05
tr|B3TLT8|B3TLT8_ELAGV 40S ribosomal protein S23 OS=Elaeis guine... 52 1e-05
tr|B3TLT7|B3TLT7_ELAGV 40S ribosomal protein S23 OS=Elaeis guine... 52 1e-05
tr|A9SB19|A9SB19_PHYPA Predicted protein OS=Physcomitrella paten... 52 1e-05
tr|A9PBK6|A9PBK6_POPTR Putative uncharacterized protein OS=Popul... 52 1e-05
tr|A7PSZ0|A7PSZ0_VITVI Chromosome chr8 scaffold_29, whole genome... 52 1e-05
tr|A5BX16|A5BX16_VITVI Putative uncharacterized protein OS=Vitis... 52 1e-05
tr|A2ZZB2|A2ZZB2_ORYSJ Putative uncharacterized protein OS=Oryza... 52 1e-05
tr|A2WWQ4|A2WWQ4_ORYSI Putative uncharacterized protein OS=Oryza... 52 1e-05
tr|Q4UB42|Q4UB42_THEAN 40s ribosomal protein s23, putative OS=Th... 51 3e-05
tr|Q4MYU6|Q4MYU6_THEPA 40S ribosomal protein S23, putative OS=Th... 51 3e-05
tr|Q7YY06|Q7YY06_CRYPV Ribosomal protein S23 OS=Cryptosporidium ... 50 4e-05
tr|B6ADS5|B6ADS5_9CRYT 40S ribosomal protein S23, putative OS=Cr... 50 4e-05
tr|A3FPT1|A3FPT1_CRYPV Ribosomal protein S23 (Fragment) OS=Crypt... 50 4e-05
tr|Q875Q2|Q875Q2_SACKL RPS23 OS=Saccharomyces kluyveri PE=3 SV=1 50 6e-05
tr|Q875M3|Q875M3_KLULA KLLA0B11231p OS=Kluyveromyces lactis GN=K... 50 6e-05

>tr|Q8VYX8|Q8VYX8_PEA Ultraviolet-B-inducible ribosomal protein
(Fragment) OS=Pisum sativum PE=2 SV=1
Length = 78

Score = 52.0 bits (123), Expect = 1e-05
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 53 VRFKVVKVSGVSLLALFKEKKEKPRS 78


>tr|Q8L4F2|Q8L4F2_ORYSJ Os03g0818400 protein OS=Oryza sativa subsp.
japonica GN=P0460C04.38 PE=2 SV=1
Length = 142

Score = 52.0 bits (123), Expect = 1e-05
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 117 VRFKVVKVSGVSLLALFKEKKEKPRS 142


>tr|Q8H6J0|Q8H6J0_MAIZE Putative 40S ribosomal protein OS=Zea mays
GN=ZMRS072.4 PE=4 SV=1
Length = 309

Score = 52.0 bits (123), Expect = 1e-05
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 244 VRFKVVKVSGVSLLALFKEKKEKPRS 269


>tr|Q677G5|Q677G5_HYAOR 40S ribosomal protein S23 (Fragment)
OS=Hyacinthus orientalis GN=RPS23 PE=2 SV=1
Length = 71

Score = 52.0 bits (123), Expect = 1e-05
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 46 VRFKVVKVSGVSLLALFKEKKEKPRS 71


>tr|Q5YJP7|Q5YJP7_HYAOR 40S ribosomal protein S23 (Fragment)
OS=Hyacinthus orientalis PE=2 SV=1
Length = 71

Score = 52.0 bits (123), Expect = 1e-05
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 46 VRFKVVKVSGVSLLALFKEKKEKPRS 71


>tr|Q38HT5|Q38HT5_SOLTU Putative uncharacterized protein OS=Solanum
tuberosum PE=2 SV=1
Length = 142

Score = 52.0 bits (123), Expect = 1e-05
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 117 VRFKVVKVSGVSLLALFKEKKEKPRS 142


>tr|Q2Q9T1|Q2Q9T1_PICMA 40S ribosomal protein (Fragment) OS=Picea
mariana PE=4 SV=1
Length = 82

Score = 52.0 bits (123), Expect = 1e-05
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 57 VRFKVVKVSGVSLLALFKEKKEKPRS 82


>tr|Q1H5G2|Q1H5G2_ARATH At3g09680 OS=Arabidopsis thaliana PE=2 SV=1
Length = 142

Score = 52.0 bits (123), Expect = 1e-05
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 117 VRFKVVKVSGVSLLALFKEKKEKPRS 142


>tr|Q0JHZ3|Q0JHZ3_ORYSJ Os01g0834600 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os01g0834600 PE=4 SV=1
Length = 46

Score = 52.0 bits (123), Expect = 1e-05
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 21 VRFKVVKVSGVSLLALFKEKKEKPRS 46


>tr|B8LKM8|B8LKM8_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 142

Score = 52.0 bits (123), Expect = 1e-05
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3

Query: 3 VRFKVVKVSGVSLLALFKEKKEKPRS 80
VRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 117 VRFKVVKVSGVSLLALFKEKKEKPRS 142