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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946147
Clone id YMU02A01NGRL0011_K04
Library
Length 296
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_K04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATACTTGGTTTAATTTCT
ACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTCTAAGATAGCTGACTC
ATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGAATAAATAAATCCGGG
TTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGGTCCCTCGTTTCAACAACTCGG
TGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAATAAAGAACGAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946147|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_K04, 5'
         (271 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    31   1.7  
sp|Q8Y577|SYW_LISMO Tryptophanyl-tRNA synthetase OS=Listeria mon...    30   3.8  
sp|Q71XG7|SYW_LISMF Tryptophanyl-tRNA synthetase OS=Listeria mon...    30   3.8  
sp|Q929H5|SYW_LISIN Tryptophanyl-tRNA synthetase OS=Listeria inn...    30   3.8  
sp|P00953|SYW_BACST Tryptophanyl-tRNA synthetase OS=Bacillus ste...    30   3.8  
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel...    30   3.8  
sp|Q830U2|SYW_ENTFA Tryptophanyl-tRNA synthetase OS=Enterococcus...    29   6.4  

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
 Frame = +1

Query: 52  LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 198
           L+ T+ +++KE+N+W+++ D   +     RI        ++  K GIN SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|Q8Y577|SYW_LISMO Tryptophanyl-tRNA synthetase OS=Listeria
           monocytogenes GN=trpS PE=3 SV=1
          Length = 331

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 56  FLL-PGR*IKKKIYG*TSKIADSSSLNLRE*IWERKLE*INPGLSRLLNIYLVERGPSFQ 232
           FLL P   I+KKI    S + DSS +     I   K E   PG+S LL IY V  G +  
Sbjct: 206 FLLDPPATIRKKI---KSAVTDSSGI-----IEYNKEE--KPGVSNLLTIYSVITGETIA 255

Query: 233 QLGEIYFPKGF 265
            + E Y  KG+
Sbjct: 256 SIEEKYVGKGY 266


>sp|Q71XG7|SYW_LISMF Tryptophanyl-tRNA synthetase OS=Listeria
           monocytogenes serotype 4b (strain F2365) GN=trpS PE=3
           SV=1
          Length = 331

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 56  FLL-PGR*IKKKIYG*TSKIADSSSLNLRE*IWERKLE*INPGLSRLLNIYLVERGPSFQ 232
           FLL P   I+KKI    S + DSS +     I   K E   PG+S LL IY V  G +  
Sbjct: 206 FLLDPPATIRKKI---KSAVTDSSGI-----IEYNKEE--KPGVSNLLTIYSVITGETIS 255

Query: 233 QLGEIYFPKGF 265
            + E Y  KG+
Sbjct: 256 TIEEKYVGKGY 266


>sp|Q929H5|SYW_LISIN Tryptophanyl-tRNA synthetase OS=Listeria
           innocua GN=trpS PE=3 SV=1
          Length = 331

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 56  FLL-PGR*IKKKIYG*TSKIADSSSLNLRE*IWERKLE*INPGLSRLLNIYLVERGPSFQ 232
           FLL P   I+KKI    S + DSS +     I   K E   PG+S LL IY V  G +  
Sbjct: 206 FLLDPPATIRKKI---KSAVTDSSGI-----IEYNKEE--KPGVSNLLTIYSVITGETIA 255

Query: 233 QLGEIYFPKGF 265
            + E Y  KG+
Sbjct: 256 NIEEKYVGKGY 266


>sp|P00953|SYW_BACST Tryptophanyl-tRNA synthetase OS=Bacillus
           stearothermophilus GN=trpS PE=1 SV=1
          Length = 328

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 176 PGLSRLLNIYLVERGPSFQQLGEIYFPKGF 265
           PG+S LLNIY    G S ++L   Y  KG+
Sbjct: 236 PGISNLLNIYSTLSGQSIEELERQYEGKGY 265


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
           burgdorferi GN=recB PE=3 SV=1
          Length = 1169

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +1

Query: 22  IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 186
           IVL+ +  + LI+   +I  EKNLW+ + +    +TK Q+I    K  IN  G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|Q830U2|SYW_ENTFA Tryptophanyl-tRNA synthetase OS=Enterococcus
           faecalis GN=trpS PE=3 SV=1
          Length = 336

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 176 PGLSRLLNIYLVERGPSFQQLGEIYFPKGF 265
           PG++ LLNIY    G + ++L + Y  KG+
Sbjct: 242 PGITNLLNIYSAATGQTVEELVQAYEGKGY 271
tr_hit_id Q54CB7
Definition tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length 55
Score (bit) 32.7
E-value 9.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946147|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_K04, 5'
         (271 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty...    33   9.1  

>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
          Length = 955

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 43  ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFVKIIEHLF 207
           I+G ++ SGE+N E   ++   DS   +T    IN+GK   IN S  +  I   F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796