DK946161
Clone id YMU02A01NGRL0011_K19
Library
Length 236
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_K19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
CTGGCGCGTGAGATGCGTGAAGGCGGCCTCTGCGCCCCTTCTGTGTTCTTCTGCTTCGTG
CACATCCGCGTTCCGATTCAGGGGGCTGTGGACCTGGTCTTCTGCCGTCTCTTGCTCGTG
GAGACTCCTTGCTGGCGTTGGTGCAGGGAATGAAGTCGACGGCTCGTGCTTGCTTGCGTG
CGTGCTGATGTTCGTTTTCGATGGAAGGTTCGATCTCTAGAGCTTGTGTGACAGCG
■■Homology search results ■■ -
sp_hit_id Q8BGX3
Definition sp|Q8BGX3|LRTM2_MOUSE Leucine-rich repeat and transmembrane domain-containing protein 2 OS=Mus musculus
Align length 31
Score (bit) 30.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946161|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_K19, 5'
(219 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8BGX3|LRTM2_MOUSE Leucine-rich repeat and transmembrane doma... 31 2.2
sp|A1S2G7|SECA_SHEAM Protein translocase subunit secA OS=Shewane... 30 2.8
sp|A2SLF1|RS3_METPP 30S ribosomal protein S3 OS=Methylibium petr... 30 2.8
sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein ... 30 4.8
sp|Q02040|SF17A_HUMAN Splicing factor, arginine/serine-rich 17A ... 30 4.8
sp|P39993|GEA2_YEAST ARF guanine-nucleotide exchange factor 2 OS... 30 4.8
sp|Q66K80|CA104_HUMAN Uncharacterized protein C1orf104 OS=Homo s... 30 4.8
sp|P35298|PRM2_MACNE Protamine-2 OS=Macaca nemestrina GN=PRM2 PE... 29 6.3
sp|P61253|PRM2_MACFU Protamine-2 OS=Macaca fuscata fuscata GN=PR... 29 6.3
sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS... 29 8.2
sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 ... 29 8.2
sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 ... 29 8.2
sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 ... 29 8.2
sp|O55111|DSG2_MOUSE Desmoglein-2 OS=Mus musculus GN=Dsg2 PE=2 SV=2 29 8.3

>sp|Q8BGX3|LRTM2_MOUSE Leucine-rich repeat and transmembrane
domain-containing protein 2 OS=Mus musculus GN=Lrtm2
PE=2 SV=1
Length = 370

Score = 30.8 bits (68), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = -2

Query: 131 PCTNASKESPRARDGRRPGPQP----PESER 51
PCT AS E P+ + G P P+P P+ +R
Sbjct: 268 PCTKASPEPPKPKPGAEPEPEPSTACPQKQR 298


>sp|A1S2G7|SECA_SHEAM Protein translocase subunit secA OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=secA PE=3
SV=1
Length = 908

Score = 30.4 bits (67), Expect = 2.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2

Query: 200 EIEPSIENEHQHARKQARAVDFIPCTNASKESPRARDGRRPGPQPP 63
E E I+ E+QHA ++ A D + + P RDG + G P
Sbjct: 846 EEEARIQREYQHAEAESMASDNSELADMASHVPVVRDGEKVGRNDP 891


>sp|A2SLF1|RS3_METPP 30S ribosomal protein S3 OS=Methylibium
petroleiphilum (strain PM1) GN=rpsC PE=3 SV=1
Length = 299

Score = 30.4 bits (67), Expect = 2.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2

Query: 119 ASKESPRARDGRRPGPQPPESERGCA 42
A P +RDG RPGP+ P ++ G A
Sbjct: 237 AGDRRPPSRDGARPGPRGPRADAGAA 262


>sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein 2
OS=Mus musculus GN=Srrm2 PE=1 SV=2
Length = 2703

Score = 29.6 bits (65), Expect = 4.8
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1

Query: 183 RKRTSARTQASTSRRLHSLHQRQQGVSTSKRRQKTRSTAP*IGTRMCTKQ 34
RKR+ + T A SRR H S+ R ++RS A I T T Q
Sbjct: 245 RKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKIHTTALTGQ 294


>sp|Q02040|SF17A_HUMAN Splicing factor, arginine/serine-rich 17A
OS=Homo sapiens GN=SFRS17A PE=1 SV=2
Length = 695

Score = 29.6 bits (65), Expect = 4.8
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -1

Query: 213 HTSSR---DRTFHRKRTSARTQASTSRRLHSLHQRQQGVSTSKRRQKTRST 70
HT SR + HR+ S + S SR+ HS H+R+ S S+ + RST
Sbjct: 643 HTRSRRSHSKDRHRRERSRERRGSASRK-HSRHRRRSERSRSRSPSRHRST 692


>sp|P39993|GEA2_YEAST ARF guanine-nucleotide exchange factor 2
OS=Saccharomyces cerevisiae GN=GEA2 PE=1 SV=1
Length = 1459

Score = 29.6 bits (65), Expect = 4.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2

Query: 182 ENEHQHARKQARAVDFIPCTNASKESPR 99
+NE + +K+ R +FI CTNA E P+
Sbjct: 548 KNEMEILKKRDRKTEFIECTNAFNEKPK 575


>sp|Q66K80|CA104_HUMAN Uncharacterized protein C1orf104 OS=Homo
sapiens GN=C1orf104 PE=2 SV=1
Length = 236

Score = 29.6 bits (65), Expect = 4.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3

Query: 66 GLWTWSSAVSCSWRLLAGVGAGNEVDGSCL 155
G W W + S S GVGAG E DG+ +
Sbjct: 65 GGWGWGNTQSLSGECRKGVGAGEEKDGAAV 94


>sp|P35298|PRM2_MACNE Protamine-2 OS=Macaca nemestrina GN=PRM2 PE=2
SV=1
Length = 103

Score = 29.3 bits (64), Expect = 6.3
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1

Query: 213 HTSSRDRTFHRKRTSARTQASTSRRLHSLHQRQQGVSTSKRRQKTR 76
H +RT HR + R + + RRLH +H+R+ +RR+ R
Sbjct: 40 HVEVYERT-HRGHSHHRRRRCSRRRLHRIHRRRHRSCRRRRRRSCR 84


>sp|P61253|PRM2_MACFU Protamine-2 OS=Macaca fuscata fuscata GN=PRM2
PE=2 SV=1
Length = 103

Score = 29.3 bits (64), Expect = 6.3
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1

Query: 213 HTSSRDRTFHRKRTSARTQASTSRRLHSLHQRQQGVSTSKRRQKTR 76
H +RT HR + R + + RRLH +H+R+ +RR+ R
Sbjct: 40 HVEVYERT-HRGHSHHRRRRCSRRRLHRIHRRRHRSCRRRRRRSCR 84


>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46
OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1
Length = 1032

Score = 28.9 bits (63), Expect = 8.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1

Query: 219 RCHTSSRDRTFHRKRTSARTQASTSRRLHSLHQRQQGVSTSKRRQKTRS 73
R + SRD+ R R R + S SR +R++ S +RR ++RS
Sbjct: 49 RERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRS 97


tr_hit_id Q9ZVD0
Definition tr|Q9ZVD0|Q9ZVD0_ARATH Expressed protein (At2g27100/T20P8.15) (Putative uncharacterized protein At2g27100) (C2H2 zinc-finger protein SERRATE) OS=Arabidopsis thaliana
Align length 49
Score (bit) 37.7
E-value 0.29
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946161|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_K19, 5'
(219 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9ZVD0|Q9ZVD0_ARATH Expressed protein (At2g27100/T20P8.15) (P... 38 0.29
tr|A3W2R8|A3W2R8_9RHOB DNA primase OS=Roseovarius sp. 217 GN=ROS... 34 3.2
tr|B4QTQ4|B4QTQ4_DROSI GD21117 OS=Drosophila simulans GN=GD21117... 33 5.5
tr|B4HH51|B4HH51_DROSE GM26616 OS=Drosophila sechellia GN=GM2661... 33 5.5
tr|A8P7C1|A8P7C1_COPC7 Predicted protein OS=Coprinopsis cinerea ... 33 5.5
tr|B4NWT6|B4NWT6_DROYA GE18176 OS=Drosophila yakuba GN=GE18176 P... 33 7.2
tr|Q9VC50|Q9VC50_DROME CG13627, isoform A OS=Drosophila melanoga... 33 7.2
tr|Q8IMV7|Q8IMV7_DROME CG13627, isoform B OS=Drosophila melanoga... 33 7.2
tr|Q8IGT7|Q8IGT7_DROME RE32656p OS=Drosophila melanogaster GN=CG... 33 7.2
tr|Q6AWM4|Q6AWM4_DROME RE33368p OS=Drosophila melanogaster GN=CG... 33 7.2
tr|B4QTR0|B4QTR0_DROSI GD21122 OS=Drosophila simulans GN=GD21122... 33 7.2
tr|B4HH57|B4HH57_DROSE GM26619 OS=Drosophila sechellia GN=GM2661... 33 7.2
tr|B6QLJ1|B6QLJ1_PENMA Putative uncharacterized protein OS=Penic... 33 7.2
tr|A6RGK9|A6RGK9_AJECN Predicted protein OS=Ajellomyces capsulat... 33 7.2
tr|Q6PEG8|Q6PEG8_DANRE Serine/arginine repetitive matrix 1 OS=Da... 33 9.4
tr|B6KRK9|B6KRK9_TOXGO Putative uncharacterized protein OS=Toxop... 33 9.4
tr|B7RTV2|B7RTV2_9GAMM Acyl-CoA dehydrogenase, C-terminal domain... 33 9.4
tr|B3NMC4|B3NMC4_DROER GG21715 OS=Drosophila erecta GN=GG21715 P... 33 9.4

>tr|Q9ZVD0|Q9ZVD0_ARATH Expressed protein (At2g27100/T20P8.15)
(Putative uncharacterized protein At2g27100) (C2H2
zinc-finger protein SERRATE) OS=Arabidopsis thaliana
GN=At2g27100 PE=2 SV=2
Length = 720

Score = 37.7 bits (86), Expect = 0.29
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3

Query: 193 NLPSKTNISTHASKHEPSTSFPAPTPARSLHEQETAEDQVHSPLNRNAD 47
NLP ++ + S+S P P P+ SL +QE +DQ PL R D
Sbjct: 5 NLPPSDSVDNRLPEKSTSSSPPPPPPSSSLPQQEQEQDQQQLPLRRERD 53


>tr|A3W2R8|A3W2R8_9RHOB DNA primase OS=Roseovarius sp. 217
GN=ROS217_17157 PE=4 SV=1
Length = 650

Score = 34.3 bits (77), Expect = 3.2
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = -2

Query: 194 EPSIENEHQHARKQARAVDFIPCTNASKESPRARDGRRPGPQP 66
+PSI + + A K R F P +AS +PRAR G+ P P+P
Sbjct: 407 DPSIRSHYGQAIKDLRWQLFNPRRSASTFTPRARGGKWPPPEP 449


>tr|B4QTQ4|B4QTQ4_DROSI GD21117 OS=Drosophila simulans GN=GD21117
PE=4 SV=1
Length = 551

Score = 33.5 bits (75), Expect = 5.5
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1

Query: 219 RCHTSSRDRTFHRKRTSARTQAST--SRRLHSLHQRQQGVSTSKRRQKTRS 73
R H+ SR R+ R R+ +R S SRR S H+R + S +RR +RS
Sbjct: 13 RSHSRSRSRSGSRSRSGSRRSGSRRRSRRSRSYHRRSRTRSRRRRRYYSRS 63


>tr|B4HH51|B4HH51_DROSE GM26616 OS=Drosophila sechellia GN=GM26616
PE=4 SV=1
Length = 957

Score = 33.5 bits (75), Expect = 5.5
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1

Query: 219 RCHTSSRDRTFHRKRTSARTQAST--SRRLHSLHQRQQGVSTSKRRQKTRS 73
R H+ SR R+ R R+ +R S SRR S H+R + S +RR +RS
Sbjct: 419 RSHSRSRSRSGSRSRSGSRRSGSRRRSRRSRSYHRRSRTRSRRRRRYYSRS 469


>tr|A8P7C1|A8P7C1_COPC7 Predicted protein OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_08195 PE=4
SV=1
Length = 549

Score = 33.5 bits (75), Expect = 5.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3

Query: 187 PSKTNISTHASKHEPSTSFPAPTPARSLHEQETAEDQVHSPLNRNA 50
PS + ST +S PST P PTP + + + + H P+N+ A
Sbjct: 256 PSNPSTSTPSSSTSPST--PTPTPTKIIEQDLEPTHRFHDPINKTA 299


>tr|B4NWT6|B4NWT6_DROYA GE18176 OS=Drosophila yakuba GN=GE18176 PE=4
SV=1
Length = 572

Score = 33.1 bits (74), Expect = 7.2
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = -1

Query: 207 SSRDRTFHRKRTSARTQASTSRRLHSLHQRQQGVSTSKRRQKTRSTAP*IGTRMCTKQKN 28
SS DRT +R S + R+ S QRQ+ S +R+++ RS +P R +
Sbjct: 317 SSEDRTQRERRRSRSPRDRRRRQSRSPEQRQRQRSPDERKERRRSRSPRDRKRRQSSSPE 376

Query: 27 TEGAQRPP 4
+ QR P
Sbjct: 377 QKQRQRSP 384


>tr|Q9VC50|Q9VC50_DROME CG13627, isoform A OS=Drosophila
melanogaster GN=CG13627 PE=1 SV=1
Length = 697

Score = 33.1 bits (74), Expect = 7.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3

Query: 187 PSKTNISTHASKHEPSTSFPAPTPARSLHEQETAEDQVHSPLN 59
PS+T I T +S P T P P S+HE ET + + P++
Sbjct: 232 PSQTQIQTPSSSARPQTYLP---PKYSVHEDETNDQTIRDPIS 271


>tr|Q8IMV7|Q8IMV7_DROME CG13627, isoform B OS=Drosophila
melanogaster GN=CG13627 PE=2 SV=2
Length = 697

Score = 33.1 bits (74), Expect = 7.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3

Query: 187 PSKTNISTHASKHEPSTSFPAPTPARSLHEQETAEDQVHSPLN 59
PS+T I T +S P T P P S+HE ET + + P++
Sbjct: 232 PSQTQIQTPSSSARPQTYLP---PKYSVHEDETNDQTIRDPIS 271


>tr|Q8IGT7|Q8IGT7_DROME RE32656p OS=Drosophila melanogaster
GN=CG13627 PE=2 SV=1
Length = 697

Score = 33.1 bits (74), Expect = 7.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3

Query: 187 PSKTNISTHASKHEPSTSFPAPTPARSLHEQETAEDQVHSPLN 59
PS+T I T +S P T P P S+HE ET + + P++
Sbjct: 232 PSQTQIQTPSSSARPQTYLP---PKYSVHEDETNDQTIRDPIS 271


>tr|Q6AWM4|Q6AWM4_DROME RE33368p OS=Drosophila melanogaster
GN=CG13627 PE=2 SV=1
Length = 697

Score = 33.1 bits (74), Expect = 7.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3

Query: 187 PSKTNISTHASKHEPSTSFPAPTPARSLHEQETAEDQVHSPLN 59
PS+T I T +S P T P P S+HE ET + + P++
Sbjct: 232 PSQTQIQTPSSSARPQTYLP---PKYSVHEDETNDQTIRDPIS 271