DK946161 |
Clone id |
YMU02A01NGRL0011_K19 |
Library |
YMU02 |
Length |
236 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_K19. 5' end sequence. |
Accession |
DK946161 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL28Contig2 |
Sequence |
CTGGCGCGTGAGATGCGTGAAGGCGGCCTCTGCGCCCCTTCTGTGTTCTTCTGCTTCGTG CACATCCGCGTTCCGATTCAGGGGGCTGTGGACCTGGTCTTCTGCCGTCTCTTGCTCGTG GAGACTCCTTGCTGGCGTTGGTGCAGGGAATGAAGTCGACGGCTCGTGCTTGCTTGCGTG CGTGCTGATGTTCGTTTTCGATGGAAGGTTCGATCTCTAGAGCTTGTGTGACAGCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8BGX3 |
Definition |
sp|Q8BGX3|LRTM2_MOUSE Leucine-rich repeat and transmembrane domain-containing protein 2 OS=Mus musculus |
Align length |
31 |
Score (bit) |
30.8 |
E-value |
2.2 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9ZVD0 |
Definition |
tr|Q9ZVD0|Q9ZVD0_ARATH Expressed protein (At2g27100/T20P8.15) (Putative uncharacterized protein At2g27100) (C2H2 zinc-finger protein SERRATE) OS=Arabidopsis thaliana |
Align length |
49 |
Score (bit) |
37.7 |
E-value |
0.29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946161|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0011_K19, 5' (219 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9ZVD0|Q9ZVD0_ARATH Expressed protein (At2g27100/T20P8.15) (P... 38 0.29 tr|A3W2R8|A3W2R8_9RHOB DNA primase OS=Roseovarius sp. 217 GN=ROS... 34 3.2 tr|B4QTQ4|B4QTQ4_DROSI GD21117 OS=Drosophila simulans GN=GD21117... 33 5.5 tr|B4HH51|B4HH51_DROSE GM26616 OS=Drosophila sechellia GN=GM2661... 33 5.5 tr|A8P7C1|A8P7C1_COPC7 Predicted protein OS=Coprinopsis cinerea ... 33 5.5 tr|B4NWT6|B4NWT6_DROYA GE18176 OS=Drosophila yakuba GN=GE18176 P... 33 7.2 tr|Q9VC50|Q9VC50_DROME CG13627, isoform A OS=Drosophila melanoga... 33 7.2 tr|Q8IMV7|Q8IMV7_DROME CG13627, isoform B OS=Drosophila melanoga... 33 7.2 tr|Q8IGT7|Q8IGT7_DROME RE32656p OS=Drosophila melanogaster GN=CG... 33 7.2 tr|Q6AWM4|Q6AWM4_DROME RE33368p OS=Drosophila melanogaster GN=CG... 33 7.2 tr|B4QTR0|B4QTR0_DROSI GD21122 OS=Drosophila simulans GN=GD21122... 33 7.2 tr|B4HH57|B4HH57_DROSE GM26619 OS=Drosophila sechellia GN=GM2661... 33 7.2 tr|B6QLJ1|B6QLJ1_PENMA Putative uncharacterized protein OS=Penic... 33 7.2 tr|A6RGK9|A6RGK9_AJECN Predicted protein OS=Ajellomyces capsulat... 33 7.2 tr|Q6PEG8|Q6PEG8_DANRE Serine/arginine repetitive matrix 1 OS=Da... 33 9.4 tr|B6KRK9|B6KRK9_TOXGO Putative uncharacterized protein OS=Toxop... 33 9.4 tr|B7RTV2|B7RTV2_9GAMM Acyl-CoA dehydrogenase, C-terminal domain... 33 9.4 tr|B3NMC4|B3NMC4_DROER GG21715 OS=Drosophila erecta GN=GG21715 P... 33 9.4
>tr|Q9ZVD0|Q9ZVD0_ARATH Expressed protein (At2g27100/T20P8.15) (Putative uncharacterized protein At2g27100) (C2H2 zinc-finger protein SERRATE) OS=Arabidopsis thaliana GN=At2g27100 PE=2 SV=2 Length = 720
Score = 37.7 bits (86), Expect = 0.29 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = -3
Query: 193 NLPSKTNISTHASKHEPSTSFPAPTPARSLHEQETAEDQVHSPLNRNAD 47 NLP ++ + S+S P P P+ SL +QE +DQ PL R D Sbjct: 5 NLPPSDSVDNRLPEKSTSSSPPPPPPSSSLPQQEQEQDQQQLPLRRERD 53
>tr|A3W2R8|A3W2R8_9RHOB DNA primase OS=Roseovarius sp. 217 GN=ROS217_17157 PE=4 SV=1 Length = 650
Score = 34.3 bits (77), Expect = 3.2 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = -2
Query: 194 EPSIENEHQHARKQARAVDFIPCTNASKESPRARDGRRPGPQP 66 +PSI + + A K R F P +AS +PRAR G+ P P+P Sbjct: 407 DPSIRSHYGQAIKDLRWQLFNPRRSASTFTPRARGGKWPPPEP 449
>tr|B4QTQ4|B4QTQ4_DROSI GD21117 OS=Drosophila simulans GN=GD21117 PE=4 SV=1 Length = 551
Score = 33.5 bits (75), Expect = 5.5 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = -1
Query: 219 RCHTSSRDRTFHRKRTSARTQAST--SRRLHSLHQRQQGVSTSKRRQKTRS 73 R H+ SR R+ R R+ +R S SRR S H+R + S +RR +RS Sbjct: 13 RSHSRSRSRSGSRSRSGSRRSGSRRRSRRSRSYHRRSRTRSRRRRRYYSRS 63
>tr|B4HH51|B4HH51_DROSE GM26616 OS=Drosophila sechellia GN=GM26616 PE=4 SV=1 Length = 957
Score = 33.5 bits (75), Expect = 5.5 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = -1
Query: 219 RCHTSSRDRTFHRKRTSARTQAST--SRRLHSLHQRQQGVSTSKRRQKTRS 73 R H+ SR R+ R R+ +R S SRR S H+R + S +RR +RS Sbjct: 419 RSHSRSRSRSGSRSRSGSRRSGSRRRSRRSRSYHRRSRTRSRRRRRYYSRS 469
>tr|A8P7C1|A8P7C1_COPC7 Predicted protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_08195 PE=4 SV=1 Length = 549
Score = 33.5 bits (75), Expect = 5.5 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -3
Query: 187 PSKTNISTHASKHEPSTSFPAPTPARSLHEQETAEDQVHSPLNRNA 50 PS + ST +S PST P PTP + + + + H P+N+ A Sbjct: 256 PSNPSTSTPSSSTSPST--PTPTPTKIIEQDLEPTHRFHDPINKTA 299
>tr|B4NWT6|B4NWT6_DROYA GE18176 OS=Drosophila yakuba GN=GE18176 PE=4 SV=1 Length = 572
Score = 33.1 bits (74), Expect = 7.2 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = -1
Query: 207 SSRDRTFHRKRTSARTQASTSRRLHSLHQRQQGVSTSKRRQKTRSTAP*IGTRMCTKQKN 28 SS DRT +R S + R+ S QRQ+ S +R+++ RS +P R + Sbjct: 317 SSEDRTQRERRRSRSPRDRRRRQSRSPEQRQRQRSPDERKERRRSRSPRDRKRRQSSSPE 376
Query: 27 TEGAQRPP 4 + QR P Sbjct: 377 QKQRQRSP 384
>tr|Q9VC50|Q9VC50_DROME CG13627, isoform A OS=Drosophila melanogaster GN=CG13627 PE=1 SV=1 Length = 697
Score = 33.1 bits (74), Expect = 7.2 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3
Query: 187 PSKTNISTHASKHEPSTSFPAPTPARSLHEQETAEDQVHSPLN 59 PS+T I T +S P T P P S+HE ET + + P++ Sbjct: 232 PSQTQIQTPSSSARPQTYLP---PKYSVHEDETNDQTIRDPIS 271
>tr|Q8IMV7|Q8IMV7_DROME CG13627, isoform B OS=Drosophila melanogaster GN=CG13627 PE=2 SV=2 Length = 697
Score = 33.1 bits (74), Expect = 7.2 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3
Query: 187 PSKTNISTHASKHEPSTSFPAPTPARSLHEQETAEDQVHSPLN 59 PS+T I T +S P T P P S+HE ET + + P++ Sbjct: 232 PSQTQIQTPSSSARPQTYLP---PKYSVHEDETNDQTIRDPIS 271
>tr|Q8IGT7|Q8IGT7_DROME RE32656p OS=Drosophila melanogaster GN=CG13627 PE=2 SV=1 Length = 697
Score = 33.1 bits (74), Expect = 7.2 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3
Query: 187 PSKTNISTHASKHEPSTSFPAPTPARSLHEQETAEDQVHSPLN 59 PS+T I T +S P T P P S+HE ET + + P++ Sbjct: 232 PSQTQIQTPSSSARPQTYLP---PKYSVHEDETNDQTIRDPIS 271
>tr|Q6AWM4|Q6AWM4_DROME RE33368p OS=Drosophila melanogaster GN=CG13627 PE=2 SV=1 Length = 697
Score = 33.1 bits (74), Expect = 7.2 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3
Query: 187 PSKTNISTHASKHEPSTSFPAPTPARSLHEQETAEDQVHSPLN 59 PS+T I T +S P T P P S+HE ET + + P++ Sbjct: 232 PSQTQIQTPSSSARPQTYLP---PKYSVHEDETNDQTIRDPIS 271
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