NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946164
Clone id YMU02A01NGRL0011_L01
Library
Length 295
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_L01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTCTTAATGGCAAAATCACATTCAGTGTTGCTAAAACCAACCTTGAAACTGGGGAGATTG
GTGGTGTCTTTGAAAGTGTTCAGCCTTCTGATACTGACCTTGGCTCTAAAGCCCCCAAAG
ATGTCAAGATTCAGGGTATTTGGTATGCGCAAGTAGAGTAGACGGAGAAAACTTGGGGTC
TTTCCTTTCGCAAGGCCCTGGCTTGACCCTGTCCTTGTTTCTATATTGTTATGTAAAGCA
AAGTTCTGAAAAAAGGTGCCTGTTCATGAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P26320
Definition sp|P26320|PSBO_SOLTU Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum tuberosum
Align length 52
Score (bit) 88.2
E-value 1.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946164|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_L01, 5'
         (268 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26320|PSBO_SOLTU Oxygen-evolving enhancer protein 1, chlorop...    88   1e-17
sp|O49079|PSBO_FRIAG Oxygen-evolving enhancer protein 1, chlorop...    87   3e-17
sp|P14226|PSBO_PEA Oxygen-evolving enhancer protein 1, chloropla...    86   8e-17
sp|P23322|PSBO_SOLLC Oxygen-evolving enhancer protein 1, chlorop...    84   2e-16
sp|Q40459|PSBO_TOBAC Oxygen-evolving enhancer protein 1, chlorop...    83   5e-16
sp|P46483|PSBO_EUGGR Oxygen-evolving enhancer protein 1, chlorop...    81   1e-15
sp|Q9SBN6|PSBO_VOLCA Oxygen-evolving enhancer protein 1, chlorop...    79   7e-15
sp|Q9S841|PSBO2_ARATH Oxygen-evolving enhancer protein 1-2, chlo...    79   7e-15
sp|P23321|PSBO1_ARATH Oxygen-evolving enhancer protein 1-1, chlo...    79   9e-15
sp|P12853|PSBO_CHLRE Oxygen-evolving enhancer protein 1, chlorop...    77   2e-14
sp|P12359|PSBO_SPIOL Oxygen-evolving enhancer protein 1, chlorop...    77   4e-14
sp|P27665|PSBO_WHEAT Oxygen-evolving enhancer protein 1, chlorop...    75   1e-13
sp|P13907|PSBO_ANASP Photosystem II manganese-stabilizing polype...    72   1e-12
sp|Q9R6W6|PSBO_CYAA5 Photosystem II manganese-stabilizing polype...    64   2e-10
sp|P10549|PSBO_SYNY3 Photosystem II manganese-stabilizing polype...    62   9e-10
sp|P0A431|PSBO_THEEB Photosystem II manganese-stabilizing polype...    59   8e-09
sp|P0A432|PSBO_SYNEN Photosystem II manganese-stabilizing polype...    59   8e-09
sp|P11472|PSBO_SYNE7 Photosystem II manganese-stabilizing polype...    56   5e-08
sp|P84989|PSBO_POPEU Oxygen-evolving enhancer protein 1, chlorop...    46   5e-05
sp|Q9XD84|TIBA_ECOLX Adhesin/invasin tibA OS=Escherichia coli GN...    30   3.8  
sp|A4RKC3|DCL1_MAGGR Dicer-like protein 1 OS=Magnaporthe grisea ...    29   8.4  

>sp|P26320|PSBO_SOLTU Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Solanum tuberosum GN=PSBO PE=2 SV=1
          Length = 333

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 40/52 (76%), Positives = 47/52 (90%)
 Frame = +3

Query: 3   LNGKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           L GKITF+V K+N +TGE+ GVFES+QPSDTDLG+K PKDVKIQGIWYAQ+E
Sbjct: 281 LTGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLE 332


>sp|O49079|PSBO_FRIAG Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Fritillaria agrestis GN=PSBO PE=2 SV=1
          Length = 329

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 41/50 (82%), Positives = 45/50 (90%)
 Frame = +3

Query: 9   GKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           GKIT SV K+  ETGE+ GVFES+QPSDTDLGSKAPKDVKIQGIWYAQ+E
Sbjct: 280 GKITLSVTKSKPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329


>sp|P14226|PSBO_PEA Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Pisum sativum GN=PSBO PE=2 SV=1
          Length = 329

 Score = 85.5 bits (210), Expect = 8e-17
 Identities = 39/50 (78%), Positives = 45/50 (90%)
 Frame = +3

Query: 9   GKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           GKIT SV +T  ETGE+ GVFES+QPSDTDLG+KAPKDVKIQG+WYAQ+E
Sbjct: 279 GKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLE 328


>sp|P23322|PSBO_SOLLC Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Solanum lycopersicum GN=PSBO PE=2 SV=2
          Length = 329

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 39/52 (75%), Positives = 45/52 (86%)
 Frame = +3

Query: 3   LNGKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           L GKIT SV ++  ETGE+ GVFES+QPSDTDLG+K PKDVKIQGIWYAQ+E
Sbjct: 278 LTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329


>sp|Q40459|PSBO_TOBAC Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1
          Length = 332

 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 38/50 (76%), Positives = 44/50 (88%)
 Frame = +3

Query: 9   GKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           GKIT SV ++  ETGE+ GVFES+QPSDTDLG+K PKDVKIQGIWYAQ+E
Sbjct: 283 GKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332


>sp|P46483|PSBO_EUGGR Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2
          Length = 338

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 35/49 (71%), Positives = 40/49 (81%)
 Frame = +3

Query: 9   GKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQV 155
           G I F VAK N ETGEI GVFES+QPSDTDLG+K PKD+K  G+WYAQ+
Sbjct: 286 GTIAFKVAKVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334


>sp|Q9SBN6|PSBO_VOLCA Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Volvox carteri GN=PSBO PE=2 SV=1
          Length = 293

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 35/51 (68%), Positives = 40/51 (78%)
 Frame = +3

Query: 3   LNGKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQV 155
           L G   FSVAK N  TGEI GVFES+QPSDTDLG+K PKD+KI G+WY Q+
Sbjct: 241 LKGSAVFSVAKVNTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291


>sp|Q9S841|PSBO2_ARATH Oxygen-evolving enhancer protein 1-2,
           chloroplastic OS=Arabidopsis thaliana GN=PSBO2 PE=1 SV=1
          Length = 331

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 34/50 (68%), Positives = 42/50 (84%)
 Frame = +3

Query: 9   GKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           G+IT  + K+  ETGE+ GVFES+QPSDTDLG+K PKDVKIQG+WY Q+E
Sbjct: 282 GEITLKITKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331


>sp|P23321|PSBO1_ARATH Oxygen-evolving enhancer protein 1-1,
           chloroplastic OS=Arabidopsis thaliana GN=PSBO1 PE=1 SV=2
          Length = 332

 Score = 78.6 bits (192), Expect = 9e-15
 Identities = 35/50 (70%), Positives = 42/50 (84%)
 Frame = +3

Query: 9   GKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           G+IT  V K+  ETGE+ GVFES+QPSDTDLG+K PKDVKIQG+WY Q+E
Sbjct: 283 GEITLKVTKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332


>sp|P12853|PSBO_CHLRE Oxygen-evolving enhancer protein 1,
           chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2
           SV=1
          Length = 291

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 34/52 (65%), Positives = 42/52 (80%)
 Frame = +3

Query: 3   LNGKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           L G   FSVAK +  TGEI GVFES+QPSDTDLG+K PKD+K+ G+WYAQ++
Sbjct: 240 LKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
tr_hit_id A9U1K9
Definition tr|A9U1K9|A9U1K9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 52
Score (bit) 91.3
E-value 2.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946164|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_L01, 5'
         (268 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U1K9|A9U1K9_PHYPA Predicted protein OS=Physcomitrella paten...    91   2e-17
tr|A9CMA1|A9CMA1_9VIRI 33kDa oxygen evolving protein of photosys...    91   2e-17
tr|A9TSK0|A9TSK0_PHYPA Predicted protein OS=Physcomitrella paten...    88   2e-16
tr|A9SA96|A9SA96_PHYPA Predicted protein OS=Physcomitrella paten...    88   2e-16
tr|A9NV80|A9NV80_PICSI Putative uncharacterized protein OS=Picea...    87   4e-16
tr|A9NRV4|A9NRV4_PICSI Putative uncharacterized protein OS=Picea...    87   4e-16
tr|B6T3B2|B6T3B2_MAIZE Oxygen-evolving enhancer protein 1 OS=Zea...    86   7e-16
tr|B4FRF2|B4FRF2_MAIZE Putative uncharacterized protein OS=Zea m...    86   7e-16
tr|A9RS28|A9RS28_PHYPA Predicted protein OS=Physcomitrella paten...    86   7e-16
tr|B4F9R9|B4F9R9_MAIZE Oxygen-evolving enhancer protein 1 OS=Zea...    85   2e-15
tr|B7FHI9|B7FHI9_MEDTR Putative uncharacterized protein OS=Medic...    84   3e-15
tr|A9PK45|A9PK45_POPJC Putative uncharacterized protein OS=Popul...    84   3e-15
tr|A9PJ90|A9PJ90_POPJC Putative uncharacterized protein OS=Popul...    84   5e-15
tr|A9PHI5|A9PHI5_POPTR Putative uncharacterized protein OS=Popul...    84   5e-15
tr|A9PGS6|A9PGS6_POPTR Putative uncharacterized protein OS=Popul...    84   5e-15
tr|A9PHA9|A9PHA9_POPTR Putative uncharacterized protein OS=Popul...    83   8e-15
tr|Q943W1|Q943W1_ORYSJ cDNA clone:001-013-B04, full insert seque...    82   1e-14
tr|B8A8L8|B8A8L8_ORYSI Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|A6N1L3|A6N1L3_ORYSI Oxygen-evolving enhancer protein 1 (Fragm...    82   1e-14
tr|A6N1E2|A6N1E2_ORYSI Oxygen-evolving enhancer protein 1 (Fragm...    82   1e-14
tr|A6N109|A6N109_ORYSI Oxygen-evolving enhancer protein 1 (Fragm...    82   1e-14
tr|Q84QE8|Q84QE8_TOBAC Oxygen evolving complex 33 kDa photosyste...    82   1e-14
tr|A7NTK5|A7NTK5_VITVI Chromosome chr18 scaffold_1, whole genome...    82   1e-14
tr|A5JV93|A5JV93_9POAL Chloroplast oxygen-evolving enhancer prot...    82   1e-14
tr|A5BPG1|A5BPG1_VITVI Putative uncharacterized protein OS=Vitis...    82   1e-14
tr|Q58H58|Q58H58_NICBE Chloroplast photosynthetic oxygen-evolvin...    82   2e-14
tr|Q9LRC4|Q9LRC4_9ROSI Oxygen evolving enhancer protein 1 OS=Bru...    81   3e-14
tr|Q6RUN4|Q6RUN4_TOBAC ERT12 (Fragment) OS=Nicotiana tabacum GN=...    80   4e-14
tr|A9CM97|A9CM97_9CHLO 33kDa oxygen evolving protein of photosys...    80   4e-14
tr|A9CM92|A9CM92_9EUGL 33kDa oxygen evolving protein of photosys...    80   5e-14

>tr|A9U1K9|A9U1K9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_200318 PE=4 SV=1
          Length = 274

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 42/52 (80%), Positives = 49/52 (94%)
 Frame = +3

Query: 3   LNGKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           LNG ITFS+AK+N+ETGEI G FES+QPSDTDLGSKAPK+VKI+GI+YAQVE
Sbjct: 223 LNGNITFSIAKSNVETGEIAGTFESIQPSDTDLGSKAPKEVKIEGIFYAQVE 274


>tr|A9CMA1|A9CMA1_9VIRI 33kDa oxygen evolving protein of photosystem
           II OS=Closterium peracerosum-strigosum-littorale complex
           GN=psbO PE=2 SV=1
          Length = 325

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 41/52 (78%), Positives = 49/52 (94%)
 Frame = +3

Query: 3   LNGKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           L+G ITFSVAK+N+ETGEIGGVF SVQPSDTD+G+K PKDVKI+GIWYAQ++
Sbjct: 274 LSGNITFSVAKSNVETGEIGGVFTSVQPSDTDMGAKVPKDVKIEGIWYAQLD 325


>tr|A9TSK0|A9TSK0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_225004 PE=4 SV=1
          Length = 326

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 40/52 (76%), Positives = 48/52 (92%)
 Frame = +3

Query: 3   LNGKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           LNG ITFS+AK+N ETGEI G FES+QPSDTDLGSKAPK+VKI+GI+YAQ++
Sbjct: 275 LNGNITFSIAKSNTETGEIAGTFESIQPSDTDLGSKAPKEVKIEGIFYAQLD 326


>tr|A9SA96|A9SA96_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_182810 PE=4 SV=1
          Length = 327

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 40/52 (76%), Positives = 47/52 (90%)
 Frame = +3

Query: 3   LNGKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           LNG ITFS+AK+N ETGEI G FES+QPSDTDLGSK PK+VKI+GI+YAQ+E
Sbjct: 275 LNGNITFSIAKSNTETGEIAGTFESIQPSDTDLGSKTPKEVKIEGIFYAQLE 326


>tr|A9NV80|A9NV80_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 341

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 40/50 (80%), Positives = 47/50 (94%)
 Frame = +3

Query: 9   GKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           G+ITFSV+K+  +TGE+ GVFES+QPSDTDLGSKAPKDVKIQGIWYAQ+E
Sbjct: 290 GEITFSVSKSKPDTGEVIGVFESLQPSDTDLGSKAPKDVKIQGIWYAQIE 339


>tr|A9NRV4|A9NRV4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 341

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 40/50 (80%), Positives = 47/50 (94%)
 Frame = +3

Query: 9   GKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           G+ITFSV+K+  +TGE+ GVFES+QPSDTDLGSKAPKDVKIQGIWYAQ+E
Sbjct: 290 GEITFSVSKSKPDTGEVIGVFESLQPSDTDLGSKAPKDVKIQGIWYAQIE 339


>tr|B6T3B2|B6T3B2_MAIZE Oxygen-evolving enhancer protein 1 OS=Zea
           mays PE=2 SV=1
          Length = 329

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 40/50 (80%), Positives = 45/50 (90%)
 Frame = +3

Query: 9   GKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           G IT SV K+N ETGE+ GVFESVQPSDTDLG+KAPKDVKIQG+WYAQ+E
Sbjct: 280 GNITLSVTKSNPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 329


>tr|B4FRF2|B4FRF2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 230

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 40/50 (80%), Positives = 45/50 (90%)
 Frame = +3

Query: 9   GKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           G IT SV K+N ETGE+ GVFESVQPSDTDLG+KAPKDVKIQG+WYAQ+E
Sbjct: 181 GNITLSVTKSNPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 230


>tr|A9RS28|A9RS28_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_177617 PE=4 SV=1
          Length = 326

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 39/52 (75%), Positives = 48/52 (92%)
 Frame = +3

Query: 3   LNGKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           LNG ITFS+AK+N++TGEI G FES QPSDTDLGSKAPK+VKI+GI+YAQ++
Sbjct: 275 LNGNITFSIAKSNVQTGEIAGTFESFQPSDTDLGSKAPKEVKIEGIFYAQLD 326


>tr|B4F9R9|B4F9R9_MAIZE Oxygen-evolving enhancer protein 1 OS=Zea
           mays PE=2 SV=1
          Length = 335

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 39/50 (78%), Positives = 45/50 (90%)
 Frame = +3

Query: 9   GKITFSVAKTNLETGEIGGVFESVQPSDTDLGSKAPKDVKIQGIWYAQVE 158
           G IT SV K+N +TGE+ GVFESVQPSDTDLG+KAPKDVKIQG+WYAQ+E
Sbjct: 286 GNITLSVTKSNPDTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 335