NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946174
Clone id YMU02A01NGRL0011_L12
Library
Length 366
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_L12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATTCAGAAGCAGACAAGAGACAACCCGGCGAACTGAAACATCTTAGTAGCCGGAGGAGG
AAAAAGCAAAAGCGATTCCCCTAGTAACGGCGAGTGAAACGGGAAGAGCCTAAACCGTGA
AGACGGGGTTGTGGGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCT
GCACCCCAGATGGTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAA
GTAGCATGGGGCACGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAAT
ATTCCTGAGTGACCGATAGCGAAGCAGTACCGTGAACAAAAAAAAAAAAAAAAAAAAAAA
AGAAAA
■■Homology search results ■■ -
sp_hit_id Q9LSL6
Definition sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana
Align length 28
Score (bit) 32.7
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946174|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_L12, 5'
         (321 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidop...    33   0.57 
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   3.7  
sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str...    30   4.8  
sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1     30   4.8  
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra...    30   4.8  
sp|Q2NAZ6|EFP_ERYLH Elongation factor P OS=Erythrobacter litoral...    30   4.8  

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis
           thaliana GN=DOF5.7 PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 86  FHSPLLGESLLLFPPPATKMFQFAGLSL 3
           F S ++ +S   FPPP T  FQ AGLSL
Sbjct: 115 FFSSIMEDSSKFFPPPTTMDFQLAGLSL 142


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 119 WESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 226
           +E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 115 FECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
           AD169) GN=TRS1 PE=3 SV=1
          Length = 788

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 167 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 274
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1
          Length = 4998

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 313  CFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA*ASCTSGYWTI 182
            C + G  G+  LT WS     G C+P +    A  +   G+W +
Sbjct: 4364 CSSQGCEGLLPLTGWSEWSPCGPCLPQSALAPASRTALEGHWPL 4407


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
           AD169) GN=IRS1 PE=3 SV=1
          Length = 846

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 167 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 274
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q2NAZ6|EFP_ERYLH Elongation factor P OS=Erythrobacter litoralis
           (strain HTCC2594) GN=efp PE=3 SV=1
          Length = 187

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 101 TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPS 229
           TV+  LWE     V L + VE    + D+ V G TASS   P+
Sbjct: 111 TVQLELWEEKPISVQLPQQVEADIVEADAVVKGQTASSSYKPA 153
tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 54
Score (bit) 89.0
E-value 1.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946174|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_L12, 5'
         (321 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    89   1e-16
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   1e-16
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   1e-16
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   1e-16
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    75   2e-12
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    64   3e-09
tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1            51   3e-09
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    52   5e-09
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    63   6e-09
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    63   6e-09
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    62   1e-08
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            58   2e-07
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    57   5e-07
tr|B0MI66|B0MI66_9FIRM Putative uncharacterized protein (Fragmen...    57   6e-07
tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geoba...    47   1e-06
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    52   1e-05
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    50   4e-05
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    50   4e-05
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    49   1e-04
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    49   1e-04
tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein OS=Helio...    49   1e-04
tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche...    49   2e-04
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    48   3e-04
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea...    47   4e-04
tr|Q1MP77|Q1MP77_LAWIP Putative uncharacterized protein LI1146 O...    38   0.001
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul...    45   0.002
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    44   0.003
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte...    43   0.007
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep...    43   0.009

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +2

Query: 158 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 319
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +2

Query: 158 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 319
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +2

Query: 158 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 319
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +2

Query: 158 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 319
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 35/47 (74%), Positives = 40/47 (85%)
 Frame = +2

Query: 179 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 319
           G+SPV+ S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47


>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00011927001 PE=4 SV=1
          Length = 60

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 33/59 (55%), Positives = 39/59 (66%)
 Frame = +2

Query: 89  GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 265
           G A  VKTGLWES++   LL EA ECCT DG+SPVA S  S  S+ SSMGH   +  +R
Sbjct: 2   GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGHEMPKKEKR 60


>tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1
          Length = 124

 Score = 50.8 bits (120), Expect(2) = 3e-09
 Identities = 27/34 (79%), Positives = 27/34 (79%)
 Frame = -2

Query: 104 RFRLFPFHSPLLGESLLLFPPPATKMFQFAGLSL 3
           RFRL PF SPLL ESLLL  P ATKMFQFA LSL
Sbjct: 45  RFRLLPFRSPLLRESLLLSIPLATKMFQFARLSL 78



 Score = 33.5 bits (75), Expect(2) = 3e-09
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = -1

Query: 234 MLLGLERELAVLPATGLSPSGVQ 166
           MLLGLER+  +L ATGLSPS VQ
Sbjct: 1   MLLGLERKPMMLSATGLSPSRVQ 23


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 51.6 bits (122), Expect(2) = 5e-09
 Identities = 23/31 (74%), Positives = 24/31 (77%)
 Frame = -3

Query: 319 RYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 227
           RY FAI H  +FSL RWS LIHTGF VPHAT
Sbjct: 242 RYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272



 Score = 32.0 bits (71), Expect(2) = 5e-09
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -1

Query: 210 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFT 103
           L +L ATG SPS VQH             SHNP+FT
Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNTMLVLLSHNPIFT 309


>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein
           OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1
          Length = 259

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 44/104 (42%), Positives = 53/104 (50%)
 Frame = -1

Query: 321 HGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPSGVQHXXXXXXX 142
           HGT+SLSVT+EYL L+ GP  F +DF CP LL  +        TGLSP+  +        
Sbjct: 109 HGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTRFT---PTGLSPAMAR----LSRR 161

Query: 141 XXXXXXSHNPVFTV*ALPVSLAVTRGIAFAFSSSGY*DVSVRRV 10
                  H P       P SLA T G++    SSGY DVSVR V
Sbjct: 162 FRLCKYQHWPG------PRSLATTNGVSVDVLSSGYLDVSVRPV 199


>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010999001 PE=4 SV=1
          Length = 73

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 32/59 (54%), Positives = 39/59 (66%)
 Frame = +2

Query: 89  GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 265
           G A  VKTGLWES++   LL EA ECCT DG+SPVA S  S  S+ +SMGH   +  +R
Sbjct: 2   GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGHEMPKKEKR 60