DK946180 |
Clone id |
YMU02A01NGRL0011_L19 |
Library |
YMU02 |
Length |
726 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_L19. 5' end sequence. |
Accession |
DK946180 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL24Contig1 |
Sequence |
TAACATATGACTTTCTATCTCCCCCTACACTGACGGTCTTTCTCCTTCTCCCGTGTAGTC TGTGAACCTGAAAAGAGCAATGGCGTCCTTGACCACAGCTTCTGCTCTCTCAGCAGCGAA GGTTGCTCCCGCCTCCCTTTCATGGAAGCAAACAGGAGCCGCGGGGCAGCAAGTGAAGCA GGATACGCCATCACCGATCTTTGGCGGCAGTACGGGAGGCCTTCTGAGAAAGGCGCAGGT GGAGGAGTTCTATGTGATCACATGGGAGTCGCCGAAGGAACAGATCTTCGAGATGCCGAC GGGAGGAGCTGCGATCATGAGGTCGGGGCCAAATCTTTTGAAGCTTGCGAGGAAGGAGCA GTGCCTTGCCCTTGGCACCAAGCTGCGTTCCAAGTTTAAAATTAATTACCAGTTCTACCG AGTGTTTCCTAATGGCGAGGTGCAGTACCTTCATCCCAAGGACGGAGTATACCCCGAGAA AGTGAACCCCGGCCGCAAGGGTGTTGGCGTGAACTTGCGCTCTATTGGAGAGAATGTAAA CCCCGCCACAGTCAAGTTCACTGGCAAGAACGCTTACGATTTGTGAGGAGCATGTTGCTG ACCCCTTTATGATTCTTTCTGTAAGTGGTCTGTGGCAAGCTCATGGTCTTCTATCTTTCA TGGATTGTAAAGGTTTTTCTGTAAATAAACAACCTTCTTCCCCCCCAAAAAAAAAAAAAA AAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P32869 |
Definition |
sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus |
Align length |
143 |
Score (bit) |
250.0 |
E-value |
5.0e-66 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946180|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0011_L19, 5' (706 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, c... 250 5e-66 sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2... 250 5e-66 sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1... 250 5e-66 sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, c... 250 6e-66 sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, c... 250 6e-66 sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, c... 246 9e-65 sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, c... 245 1e-64 sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, c... 211 4e-54 sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, c... 196 1e-49 sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS... 194 5e-49 sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS... 191 4e-48 sp|O96800|PSAD_SKECO Photosystem I reaction center subunit II OS... 187 5e-47 sp|Q1XDK7|PSAD_PORYE Photosystem I reaction center subunit II OS... 184 5e-46 sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS... 184 5e-46 sp|O07115|PSAD_MASLA Photosystem I reaction center subunit II OS... 182 2e-45 sp|P19569|PSAD_SYNY3 Photosystem I reaction center subunit II OS... 179 1e-44 sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II OS... 175 2e-43 sp|Q9TLR2|PSAD_CYACA Photosystem I reaction center subunit II OS... 171 3e-42 sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II OS... 169 1e-41 sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II OS... 167 4e-41 sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II OS... 167 4e-41 sp|P0A421|PSAD_SYNEN Photosystem I reaction center subunit II OS... 167 4e-41 sp|P58573|PSAD_ANASP Photosystem I reaction center subunit II OS... 166 1e-40 sp|P56596|PSAD_NOSS8 Photosystem I reaction center subunit II OS... 165 2e-40 sp|P23808|PSAD_FREDI Photosystem I reaction center subunit II OS... 162 2e-39 sp|Q7NF26|PSAD_GLOVI Photosystem I reaction center subunit II OS... 159 2e-38 sp|Q3K9Y9|Y3677_PSEPF UPF0082 protein Pfl01_3677 OS=Pseudomonas ... 36 0.18 sp|P84563|PSAD_POPEU Photosystem I reaction center subunit II (F... 36 0.23 sp|A5H447|ZYX_XENLA Zyxin OS=Xenopus laevis GN=zyx PE=1 SV=1 28 0.73 sp|Q4K9M3|Y3960_PSEF5 UPF0082 protein PFL_3960 OS=Pseudomonas fl... 33 1.5
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1 Length = 207
Score = 250 bits (639), Expect = 5e-66 Identities = 120/143 (83%), Positives = 128/143 (89%) Frame = +2
Query: 155 GAAGQQVKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRSGPN 334 G + ++ TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR GPN Sbjct: 65 GFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPN 124
Query: 335 LLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVN 514 LLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+GVG N Sbjct: 125 LLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN 184
Query: 515 LRSIGENVNPATVKFTGKNAYDL 583 RSIG+NV+P VKFTGK YDL Sbjct: 185 FRSIGKNVSPIEVKFTGKQVYDL 207
>sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1 Length = 204
Score = 250 bits (639), Expect = 5e-66 Identities = 119/143 (83%), Positives = 129/143 (90%) Frame = +2
Query: 155 GAAGQQVKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRSGPN 334 G Q+ +TPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMR GPN Sbjct: 62 GFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPN 121
Query: 335 LLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVN 514 LLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR+GVG+N Sbjct: 122 LLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLN 181
Query: 515 LRSIGENVNPATVKFTGKNAYDL 583 +RSIG+NV+P VKFTGK +YDL Sbjct: 182 MRSIGKNVSPIEVKFTGKQSYDL 204
>sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1 Length = 208
Score = 250 bits (639), Expect = 5e-66 Identities = 119/143 (83%), Positives = 129/143 (90%) Frame = +2
Query: 155 GAAGQQVKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRSGPN 334 G Q+ +TPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMR GPN Sbjct: 66 GFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPN 125
Query: 335 LLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVN 514 LLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR+GVG+N Sbjct: 126 LLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLN 185
Query: 515 LRSIGENVNPATVKFTGKNAYDL 583 +RSIG+NV+P VKFTGK +YDL Sbjct: 186 MRSIGKNVSPIEVKFTGKQSYDL 208
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2 Length = 212
Score = 250 bits (638), Expect = 6e-66 Identities = 119/143 (83%), Positives = 130/143 (90%) Frame = +2
Query: 155 GAAGQQVKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRSGPN 334 G ++ +TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR GPN Sbjct: 70 GFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPN 129
Query: 335 LLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVN 514 LLKLARKEQCLALGT+LRSK+KI YQFYRVFP+GEVQYLHPKDGVYPEKVNPGR+GVG+N Sbjct: 130 LLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLN 189
Query: 515 LRSIGENVNPATVKFTGKNAYDL 583 +RSIG+NV+P VKFTGK YDL Sbjct: 190 MRSIGKNVSPIEVKFTGKQPYDL 212
>sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1 Length = 208
Score = 250 bits (638), Expect = 6e-66 Identities = 120/143 (83%), Positives = 128/143 (89%) Frame = +2
Query: 155 GAAGQQVKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRSGPN 334 G Q+ +TPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR GPN Sbjct: 66 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPN 125
Query: 335 LLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVN 514 LLKLARKEQCLALGT+LRSK+KINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+GVG N Sbjct: 126 LLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN 185
Query: 515 LRSIGENVNPATVKFTGKNAYDL 583 RSIG+N + VKFTGK YD+ Sbjct: 186 FRSIGKNKSAIEVKFTGKQVYDI 208
>sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1 Length = 204
Score = 246 bits (628), Expect = 9e-65 Identities = 119/143 (83%), Positives = 127/143 (88%) Frame = +2
Query: 155 GAAGQQVKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRSGPN 334 G Q+ +TPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR G N Sbjct: 62 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGAN 121
Query: 335 LLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVN 514 LLKLARKEQCLALGT+LRSK+KINY+FYRVFPNGEVQYLHPKDGVYPEKVN GR+GVG N Sbjct: 122 LLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQN 181
Query: 515 LRSIGENVNPATVKFTGKNAYDL 583 RSIG+N +P VKFTGK YDL Sbjct: 182 FRSIGKNKSPIEVKFTGKQVYDL 204
>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1 Length = 205
Score = 245 bits (626), Expect = 1e-64 Identities = 117/143 (81%), Positives = 127/143 (88%) Frame = +2
Query: 155 GAAGQQVKQDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRSGPN 334 G Q+ TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMR GPN Sbjct: 63 GFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPN 122
Query: 335 LLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVN 514 LLKLARKEQCLALG +LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEKVN GR+GVG N Sbjct: 123 LLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQN 182
Query: 515 LRSIGENVNPATVKFTGKNAYDL 583 RSIG+NV+P VKFTGKN++D+ Sbjct: 183 FRSIGKNVSPIEVKFTGKNSFDI 205
>sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1 Length = 196
Score = 211 bits (536), Expect = 4e-54 Identities = 100/129 (77%), Positives = 111/129 (86%) Frame = +2
Query: 182 DTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQ 361 DTPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR GPNLLK +KEQ Sbjct: 61 DTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQ 120
Query: 362 CLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVN 541 CLAL T+LR+KFK+ FYRVFP+G+VQYLHP DGVYPEKVN GR G N+R IG+NVN Sbjct: 121 CLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVN 180
Query: 542 PATVKFTGK 568 P VKF+G+ Sbjct: 181 PIKVKFSGR 189
>sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1 Length = 220
Score = 196 bits (497), Expect = 1e-49 Identities = 91/134 (67%), Positives = 112/134 (83%), Gaps = 1/134 (0%) Frame = +2
Query: 182 DTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQ 361 + P+PIFGGSTGGLLRKA+VEEFY ITW E +FE+PTGGAAIMR+G NLL+LARKEQ Sbjct: 82 NAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQ 141
Query: 362 CLALGTKLRSKFKI-NYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENV 538 C+ALG +L+ KFKI +Y+ YRV+P+GEVQ+LHPKDGV+PEKVNPGR VG N R IG+N Sbjct: 142 CIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVAVGSNKRRIGQNP 201
Query: 539 NPATVKFTGKNAYD 580 +PA +KF G+ +D Sbjct: 202 DPAKLKFKGQETFD 215
>sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1 Length = 141
Score = 194 bits (492), Expect = 5e-49 Identities = 94/132 (71%), Positives = 109/132 (82%), Gaps = 1/132 (0%) Frame = +2
Query: 188 PSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCL 367 PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR G NLL LARKEQCL Sbjct: 10 PSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCL 69
Query: 368 ALGTKLRSKFKI-NYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNP 544 ALGT++++ FKI +Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR GVG SIG+N+NP Sbjct: 70 ALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIGKNLNP 129
Query: 545 ATVKFTGKNAYD 580 A +KFT K+ D Sbjct: 130 AQIKFTNKSFCD 141
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NL03 |
Definition |
tr|A9NL03|A9NL03_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
143 |
Score (bit) |
262.0 |
E-value |
1.0e-68 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) |