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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946181
Clone id YMU02A01NGRL0011_L20
Library
Length 483
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_L20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGGGGGCTGGCTGCACTTGAGGTCTTGGAGTACCATGAAAATGACGAATTGCGAGCTATG
GCAAACGAGCTGATTGACAAGTATTATGGGGAAGATTATGGGCTAGAAGAAGAGTATGGT
CCTGGCATTGCAGAGGTCCTGAAAGGTGGGGAAGAATATCCATCTTGGAGAAGAGGCTGG
GTAGTCAATTCTTAAGGCTTTTTCTACAAGAGGGGAATTTCTGGGTAGATGTGGTCTTAT
AAATTTGTGTAGTTCCATGTCTACCTGTATCTCCCCTATAGCCAATTGTCCAACACACAT
GTTTGTAGGAGTGTAGAGGGCAAGGGTTTTGCAAAGACAGAACGACGCCTTGCTGTGCTT
GCAAAAGTTCAATTAAATTGATGCCCAAGAGCTCCATTGTGTCGGTGTCTAGGCCACCTC
TCCTCCCGCAGCATCTTTGCAGATCCAGATCACGTGAGATCTATTTTTGTCATCATGTTA
AGT
■■Homology search results ■■ -
sp_hit_id Q9FYP9
Definition sp|Q9FYP9|IMA2_ORYSJ Importin subunit alpha-2 OS=Oryza sativa subsp. japonica
Align length 26
Score (bit) 33.5
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946181|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_L20, 5'
         (483 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FYP9|IMA2_ORYSJ Importin subunit alpha-2 OS=Oryza sativa su...    33   0.52 
sp|O35344|IMA3_MOUSE Importin subunit alpha-3 OS=Mus musculus GN...    33   0.88 
sp|O00505|IMA3_HUMAN Importin subunit alpha-3 OS=Homo sapiens GN...    33   0.88 
sp|O35343|IMA4_MOUSE Importin subunit alpha-4 OS=Mus musculus GN...    30   4.4  
sp|O00629|IMA4_HUMAN Importin subunit alpha-4 OS=Homo sapiens GN...    30   4.4  
sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS...    30   5.7  
sp|P01864|GCAB_MOUSE Ig gamma-2A chain C region secreted form OS...    30   7.5  

>sp|Q9FYP9|IMA2_ORYSJ Importin subunit alpha-2 OS=Oryza sativa
           subsp. japonica GN=Os01g0158000 PE=2 SV=1
          Length = 528

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = +1

Query: 4   GLAALEVLEYHENDELRAMANELIDK 81
           G+ A+E  ++HEN+++R MAN L+D+
Sbjct: 493 GIEAMERFQFHENEQMRNMANGLVDE 518


>sp|O35344|IMA3_MOUSE Importin subunit alpha-3 OS=Mus musculus
           GN=Kpna3 PE=2 SV=1
          Length = 521

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +1

Query: 1   GGLAALEVLEYHENDELRAMANELIDK 81
           GGL  +EVL+ HEN+++  +A E+ID+
Sbjct: 457 GGLEKIEVLQQHENEDIYKLAFEIIDQ 483


>sp|O00505|IMA3_HUMAN Importin subunit alpha-3 OS=Homo sapiens
           GN=KPNA3 PE=1 SV=2
          Length = 521

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +1

Query: 1   GGLAALEVLEYHENDELRAMANELIDK 81
           GGL  +EVL+ HEN+++  +A E+ID+
Sbjct: 457 GGLEKIEVLQQHENEDIYKLAFEIIDQ 483


>sp|O35343|IMA4_MOUSE Importin subunit alpha-4 OS=Mus musculus
           GN=Kpna4 PE=2 SV=1
          Length = 521

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 1   GGLAALEVLEYHENDELRAMANELIDK 81
           GGL  +E L+ HEN+++  +A E+ID+
Sbjct: 457 GGLEKIEQLQNHENEDIYKLAYEIIDQ 483


>sp|O00629|IMA4_HUMAN Importin subunit alpha-4 OS=Homo sapiens
           GN=KPNA4 PE=1 SV=1
          Length = 521

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 1   GGLAALEVLEYHENDELRAMANELIDK 81
           GGL  +E L+ HEN+++  +A E+ID+
Sbjct: 457 GGLEKIEQLQNHENEDIYKLAYEIIDQ 483


>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1
           OS=Danio rerio GN=slc47a1 PE=2 SV=1
          Length = 590

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -3

Query: 274 GDTGRHGTTQIYKTTSTQKF-PSCRKSLKN*LPSLF-SKMDILPHLSGPL 131
           GDT +     +  T+STQKF   CRK L++ LP  + +++  L  L+GP+
Sbjct: 14  GDTKQEKCDDVLSTSSTQKFCGGCRKKLRSLLPVNYKTEIVELLKLAGPV 63


>sp|P01864|GCAB_MOUSE Ig gamma-2A chain C region secreted form
           OS=Mus musculus PE=1 SV=1
          Length = 335

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
 Frame = +1

Query: 289 SNTHVCRSVEGKGFAKTERRLAVLAKVQLN*CP---RAPLCRCLGHLSSRSIFADPDHVR 459
           S T  C         K ++++     +  N CP   R P C     L   S+F  P  ++
Sbjct: 77  SQTITCNVAHPASSTKVDKKIEPRVPITQNPCPPHQRVPPCAAPDLLGGPSVFIFPPKIK 136

Query: 460 SIFVIMLS 483
            + +I LS
Sbjct: 137 DVLMISLS 144
tr_hit_id A9RWQ2
Definition tr|A9RWQ2|A9RWQ2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 58
Score (bit) 45.1
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946181|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_L20, 5'
         (483 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RWQ2|A9RWQ2_PHYPA Predicted protein (Fragment) OS=Physcomit...    45   0.002
tr|A9TA26|A9TA26_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|Q9LYX8|Q9LYX8_ARATH Importin alpha-like protein OS=Arabidopsi...    38   0.22 
tr|Q0JQJ0|Q0JQJ0_ORYSJ cDNA clone:J033119N19, full insert sequen...    33   5.3  
tr|B8ADD2|B8ADD2_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.3  
tr|B6SUZ9|B6SUZ9_MAIZE Importin alpha-2 subunit OS=Zea mays PE=2...    33   5.3  
tr|A7PT00|A7PT00_VITVI Chromosome chr8 scaffold_29, whole genome...    33   5.3  
tr|A2ZPH2|A2ZPH2_ORYSJ Putative uncharacterized protein OS=Oryza...    33   5.3  
tr|B1X4P7|B1X4P7_PAUCH tRNA nucleotidyltransferase/poly(A) polym...    33   5.3  
tr|A3JW46|A3JW46_9RHOB Glycosyltransferase OS=Rhodobacterales ba...    33   7.0  
tr|Q56R18|Q56R18_RAT Karyopherin alpha 3 OS=Rattus norvegicus GN...    33   9.1  
tr|Q543M7|Q543M7_MOUSE Putative uncharacterized protein OS=Mus m...    33   9.1  
tr|A7T4F4|A7T4F4_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   9.1  
tr|Q8IYQ9|Q8IYQ9_HUMAN Karyopherin alpha 3 (Importin alpha 4) OS...    33   9.1  
tr|Q5JVN1|Q5JVN1_HUMAN Karyopherin alpha 3 (Importin alpha 4) (F...    33   9.1  
tr|Q5JVM9|Q5JVM9_HUMAN Importin alpha-3 subunit OS=Homo sapiens ...    33   9.1  
tr|Q53F09|Q53F09_HUMAN Karyopherin alpha 3 variant (Fragment) OS...    33   9.1  

>tr|A9RWQ2|A9RWQ2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_120699 PE=4 SV=1
          Length = 495

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 24/58 (41%), Positives = 32/58 (55%)
 Frame = +1

Query: 4   GLAALEVLEYHENDELRAMANELIDKXXXXXXXXXXXXXXXIAEVLKGGEEYPSWRRG 177
           G+AA+E L++H N+ELR M+N LID+                A   + G EYP WRRG
Sbjct: 435 GIAAMEELQFHANEELRIMSNMLIDQYFGEDYGLEEEFVSGDART-QYGPEYPPWRRG 491


>tr|A9TA26|A9TA26_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_142387 PE=4 SV=1
          Length = 515

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
 Frame = +1

Query: 4   GLAALEVLEYHENDELRAMANELIDKXXXXXXXXXXXXXXXIAEVLKGGE-------EYP 162
           G+AA+E L++H+N+ELR M+N L+D+                 E L+ G+       EYP
Sbjct: 455 GIAAMEELQFHDNEELRIMSNILVDQ--------YFGEDYGFEEELESGDMRTEDDSEYP 506

Query: 163 SWRRG 177
            WRRG
Sbjct: 507 PWRRG 511


>tr|Q9LYX8|Q9LYX8_ARATH Importin alpha-like protein OS=Arabidopsis
           thaliana GN=F15A17_100 PE=4 SV=1
          Length = 483

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 4   GLAALEVLEYHENDELRAMANELIDK 81
           G+ A+E  ++HEN+ELR MAN L+DK
Sbjct: 448 GIDAMERFQFHENEELRVMANSLVDK 473


>tr|Q0JQJ0|Q0JQJ0_ORYSJ cDNA clone:J033119N19, full insert sequence
           OS=Oryza sativa subsp. japonica GN=Os01g0158000 PE=2
           SV=1
          Length = 528

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = +1

Query: 4   GLAALEVLEYHENDELRAMANELIDK 81
           G+ A+E  ++HEN+++R MAN L+D+
Sbjct: 493 GIEAMERFQFHENEQMRNMANGLVDE 518


>tr|B8ADD2|B8ADD2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00484 PE=4 SV=1
          Length = 528

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = +1

Query: 4   GLAALEVLEYHENDELRAMANELIDK 81
           G+ A+E  ++HEN+++R MAN L+D+
Sbjct: 493 GIEAMERFQFHENEQMRNMANGLVDE 518


>tr|B6SUZ9|B6SUZ9_MAIZE Importin alpha-2 subunit OS=Zea mays PE=2
           SV=1
          Length = 526

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 4   GLAALEVLEYHENDELRAMANELIDK 81
           G+ A+E  ++HEN+ +R MAN L+DK
Sbjct: 493 GIEAMERFQFHENEMMRNMANGLVDK 518


>tr|A7PT00|A7PT00_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023154001
           PE=4 SV=1
          Length = 454

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +1

Query: 4   GLAALEVLEYHENDELRAMANELID 78
           G+ A+E  ++HEN++LR MAN L+D
Sbjct: 419 GIDAMERFQFHENEDLRNMANGLVD 443


>tr|A2ZPH2|A2ZPH2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_000444 PE=4 SV=1
          Length = 504

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = +1

Query: 4   GLAALEVLEYHENDELRAMANELIDK 81
           G+ A+E  ++HEN+++R MAN L+D+
Sbjct: 469 GIEAMERFQFHENEQMRNMANGLVDE 494


>tr|B1X4P7|B1X4P7_PAUCH tRNA nucleotidyltransferase/poly(A)
           polymerase OS=Paulinella chromatophora GN=pcnB PE=4 SV=1
          Length = 410

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
 Frame = +1

Query: 232 WSYKFV*FHVYLY----------LPYSQLSNTHVCRSVEGKGFAKTERRLAVLAKVQLN* 381
           W  +F+ FH +L           +P SQ   +  CR +EG+G+A     L +++ +Q   
Sbjct: 303 WLKEFIEFHQFLIGIRTKNSFSKIPISQWPPSRWCRELEGRGWAPETIVLGLISGIQ--- 359

Query: 382 CPRAPLCR 405
            PR PL R
Sbjct: 360 -PRKPLLR 366


>tr|A3JW46|A3JW46_9RHOB Glycosyltransferase OS=Rhodobacterales
           bacterium HTCC2150 GN=RB2150_00105 PE=4 SV=1
          Length = 340

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +3

Query: 105 RRRVWSWHCRGPERWGRISILEKRLGSQFLRLFLQEGNF 221
           R+R+   H   PER+  I +LEKRL ++   L L EG+F
Sbjct: 260 RQRLKDCHIARPERYDVIQLLEKRLATKEYMLSLLEGSF 298