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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946190
Clone id YMU02A01NGRL0011_M11
Library
Length 551
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_M11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTAGACCAACTGAGCATTCTTTGTCTGTGAACTGTATACATCCTTGTAGATAATTTATCT
CTGAGAGCATTTGGCTGCCAGGAAGATAAGGTGGCGCCTGTTTGATGTCGTCCAGCCTGA
CGATGGCTACCTCGTCCCCTCTGGCCACTTCTGTGTCAGGTTTCACAACTGATCTTGATG
ACAAGTGGTTAAGTCCTGGTATCAACTCTCTATCAACAAGAAGAACCAGTACGAAAAAGC
TTGGGTTTGCCTCATGTCAAGCCTTGGGTAGTGGTATGTTGTCGTCAGGTAGCTCCAGGG
GGACCCGGACATCAAGACAGGGCCACTTAGTTGGTGTAGCACGCTGTGAAGTAAGTGAAG
AAAAGAGTAACAGTTTGGTCATATGGCTAGGACGTGCAGCCATGCTAGGGTTTGTCAGTG
TGGTCTCCGTTGAAGTTGCCACCGGAAAAGGAGTTCTAGAGAATGCAGGTTTGGTAGCTC
CTCTTCCTACGTTGGCATTGGCATTGACGGCTGTCGTGGGGGTAGTTGTAGCTTTTGGAA
TCTTCCGGTCC
■■Homology search results ■■ -
sp_hit_id Q1XDD2
Definition sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra yezoensis
Align length 31
Score (bit) 38.9
E-value 0.017
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946190|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_M11, 5'
         (551 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra ...    39   0.017
sp|P51355|YCF17_PORPU Uncharacterized protein ycf17 OS=Porphyra ...    37   0.049
sp|Q3MCT9|HEMH_ANAVT Ferrochelatase OS=Anabaena variabilis (stra...    34   0.41 
sp|Q8YQR8|HEMH_ANASP Ferrochelatase OS=Anabaena sp. (strain PCC ...    34   0.41 
sp|Q01931|DS22_CRAPL Desiccation stress protein DSP-22, chloropl...    33   0.92 
sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic OS=Arabido...    33   1.2  
sp|P11432|ELI_PEA Early light-induced protein, chloroplastic OS=...    32   2.0  
sp|P14895|ELI5_HORVU High molecular mass early light-inducible p...    32   2.0  
sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophor...    32   2.7  
sp|Q0DIV0|HEMH_ORYSJ Ferrochelatase-2, chloroplastic OS=Oryza sa...    31   3.5  
sp|A2Y3Q5|HEMH_ORYSI Ferrochelatase-2, chloroplastic OS=Oryza sa...    31   3.5  
sp|Q5N2B2|HEMH_SYNP6 Ferrochelatase OS=Synechococcus sp. (strain...    31   4.6  
sp|Q31S00|HEMH_SYNE7 Ferrochelatase OS=Synechococcus elongatus (...    31   4.6  
sp|B0JRN7|HEMH_MICAN Ferrochelatase OS=Microcystis aeruginosa (s...    31   4.6  
sp|P27516|CBR_DUNBA Carotene biosynthesis-related protein CBR, c...    31   4.6  
sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplasti...    30   6.0  
sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplasti...    30   7.8  
sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplasti...    30   7.8  
sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplasti...    30   7.8  
sp|Q9H195|MUC3B_HUMAN Mucin-3B (Fragment) OS=Homo sapiens GN=MUC...    30   7.8  

>sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra
           yezoensis GN=ycf17 PE=3 SV=1
          Length = 48

 Score = 38.9 bits (89), Expect = 0.017
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +3

Query: 366 SNSLVIWLGRAAMLGFVSVVSVEVATGKGVL 458
           ++S   W GR AM+GF+SV+ +EV TG+G+L
Sbjct: 11  TDSAETWNGRFAMIGFISVIFIEVVTGQGLL 41


>sp|P51355|YCF17_PORPU Uncharacterized protein ycf17 OS=Porphyra
           purpurea GN=ycf17 PE=3 SV=1
          Length = 48

 Score = 37.4 bits (85), Expect = 0.049
 Identities = 15/31 (48%), Positives = 24/31 (77%)
 Frame = +3

Query: 366 SNSLVIWLGRAAMLGFVSVVSVEVATGKGVL 458
           ++S   W GR AM+GF++V+ +E+ TGKG+L
Sbjct: 11  TDSAETWNGRFAMIGFMAVIFIELVTGKGLL 41


>sp|Q3MCT9|HEMH_ANAVT Ferrochelatase OS=Anabaena variabilis (strain
           ATCC 29413 / PCC 7937) GN=hemH PE=3 SV=1
          Length = 388

 Score = 34.3 bits (77), Expect = 0.41
 Identities = 14/31 (45%), Positives = 25/31 (80%)
 Frame = +3

Query: 366 SNSLVIWLGRAAMLGFVSVVSVEVATGKGVL 458
           ++S  +W GR AMLGF++++ +E+ TG+G+L
Sbjct: 352 TSSAEVWNGRIAMLGFIALI-IELVTGQGLL 381


>sp|Q8YQR8|HEMH_ANASP Ferrochelatase OS=Anabaena sp. (strain PCC
           7120) GN=hemH PE=3 SV=1
          Length = 388

 Score = 34.3 bits (77), Expect = 0.41
 Identities = 14/31 (45%), Positives = 25/31 (80%)
 Frame = +3

Query: 366 SNSLVIWLGRAAMLGFVSVVSVEVATGKGVL 458
           ++S  +W GR AMLGF++++ +E+ TG+G+L
Sbjct: 352 TSSAEVWNGRIAMLGFIALI-IELVTGQGLL 381


>sp|Q01931|DS22_CRAPL Desiccation stress protein DSP-22,
           chloroplastic OS=Craterostigma plantagineum GN=DSP-22
           PE=2 SV=1
          Length = 199

 Score = 33.1 bits (74), Expect = 0.92
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +3

Query: 390 GRAAMLGFVSVVSVEVATGKGV 455
           GR+AM+GFV+ V VE+ATG+ V
Sbjct: 104 GRSAMIGFVAAVGVELATGRDV 125


>sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic
           OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1
          Length = 512

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 366 SNSLVIWLGRAAMLGFVSVVSVEVATGKGVL 458
           + S   W GRAAML  ++++ +EV TGKG L
Sbjct: 473 TKSAETWNGRAAMLAVLALLVLEVTTGKGFL 503


>sp|P11432|ELI_PEA Early light-induced protein, chloroplastic
           OS=Pisum sativum PE=2 SV=1
          Length = 196

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +3

Query: 390 GRAAMLGFVSVVSVEVATGKGVLE 461
           GR AM+GFV+ + VE+A G+G+ E
Sbjct: 103 GRLAMIGFVAAMGVEIAKGQGLSE 126


>sp|P14895|ELI5_HORVU High molecular mass early light-inducible
           protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1
          Length = 231

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +3

Query: 390 GRAAMLGFVSVVSVEVATGKGVLE 461
           GR AM+GFV+ +SVE A G G+L+
Sbjct: 134 GRLAMVGFVAALSVEAARGGGLLD 157


>sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophora
           paradoxa GN=ycf17 PE=3 SV=1
          Length = 49

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 384 WLGRAAMLGFVSVVSVEVATGKGVL 458
           W GR AMLGF++ +  E  TG+G L
Sbjct: 19  WNGRLAMLGFIAALLTESLTGQGTL 43


>sp|Q0DIV0|HEMH_ORYSJ Ferrochelatase-2, chloroplastic OS=Oryza
           sativa subsp. japonica GN=HEMH PE=2 SV=1
          Length = 526

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 366 SNSLVIWLGRAAMLGFVSVVSVEVATGKGVL 458
           + S   W GRAAML  ++++ +EV TG+G L
Sbjct: 486 TKSAETWNGRAAMLAVLALLVLEVTTGEGFL 516
tr_hit_id A9NK68
Definition tr|A9NK68|A9NK68_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 49
Score (bit) 62.4
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946190|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_M11, 5'
         (551 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NK68|A9NK68_PICSI Putative uncharacterized protein OS=Picea...    62   2e-08
tr|A5B423|A5B423_VITVI Putative uncharacterized protein (Chromos...    59   2e-07
tr|B6SRW4|B6SRW4_MAIZE Putative uncharacterized protein OS=Zea m...    55   2e-06
tr|B6SQP2|B6SQP2_MAIZE Putative uncharacterized protein OS=Zea m...    54   7e-06
tr|A8IXP9|A8IXP9_BRACM Stress enhanced protein 1 OS=Brassica cam...    53   9e-06
tr|Q9M7I9|Q9M7I9_ARATH Stress enhanced protein 1 (At4g34190/F28A...    52   2e-05
tr|O49486|O49486_ARATH Putative uncharacterized protein AT4g3419...    52   2e-05
tr|A9PFE3|A9PFE3_POPTR Putative uncharacterized protein OS=Popul...    52   2e-05
tr|B6U7S0|B6U7S0_MAIZE Putative uncharacterized protein OS=Zea m...    51   4e-05
tr|A9TLE2|A9TLE2_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|Q8L574|Q8L574_ORYSJ Putative stress enhanced protein (Express...    45   0.002
tr|Q109Q6|Q109Q6_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    45   0.002
tr|A3C4F7|A3C4F7_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A2Z6X7|A2Z6X7_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|Q109Q5|Q109Q5_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    43   0.010
tr|Q9SWB0|Q9SWB0_CAPAN Differentially expressed osmotic protein ...    42   0.016
tr|B4WNV1|B4WNV1_9SYNE Putative uncharacterized protein OS=Synec...    41   0.048
tr|Q5W9T0|Q5W9T0_CHLRE Lhc-like protein Lhl4 (High intensity lig...    37   0.53 
tr|Q4BUR3|Q4BUR3_CROWT CAB/ELIP/HLIP superfamily OS=Crocosphaera...    37   0.69 
tr|Q6A949|Q6A949_PROAC Transcriptional regulator OS=Propionibact...    37   0.90 
tr|B1WXE9|B1WXE9_CYAA5 Putative CAB/ELIP/HLIP superfamily protei...    37   0.90 
tr|A8YCW9|A8YCW9_MICAE Similarity to tr|Q9SI74|Q9SI74 (Fragment)...    37   0.90 
tr|Q3M909|Q3M909_ANAVT CAB/ELIP/HLIP superfamily OS=Anabaena var...    36   1.2  
tr|A0YTZ2|A0YTZ2_9CYAN CAB/ELIP/HLIP superfamily of protein OS=L...    36   1.2  
tr|P93169|P93169_SOYBN Early light-induced protein OS=Glycine ma...    36   1.2  
tr|B0CFS4|B0CFS4_ACAM1 CAB/ELIP/HLIP superfamily protein, putati...    36   1.5  
tr|B0BZB3|B0BZB3_ACAM1 High light inducible protein OS=Acaryochl...    36   1.5  
tr|A8ZP26|A8ZP26_ACAM1 CAB/ELIP/HLIP superfamily protein, putati...    36   1.5  
tr|A3IW30|A3IW30_9CHRO CAB/ELIP/HLIP superfamily protein OS=Cyan...    36   1.5  
tr|B6V6N2|B6V6N2_9CONI Putative early light-induced protein (Fra...    36   1.5  

>tr|A9NK68|A9NK68_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 153

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 31/49 (63%), Positives = 39/49 (79%)
 Frame = +3

Query: 318 QGHLVGVARCEVSEEKSNSLVIWLGRAAMLGFVSVVSVEVATGKGVLEN 464
           +G LVGV RCE S E +NSL IWLGR AML FV+ +++E+ TGKGVL+N
Sbjct: 73  RGVLVGV-RCEQSTEGNNSLDIWLGRFAMLSFVAAITIEITTGKGVLQN 120


>tr|A5B423|A5B423_VITVI Putative uncharacterized protein (Chromosome
           chr3 scaffold_8, whole genome shotgun sequence) OS=Vitis
           vinifera GN=GSVIVT00036647001 PE=4 SV=1
          Length = 148

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 26/41 (63%), Positives = 32/41 (78%)
 Frame = +3

Query: 342 RCEVSEEKSNSLVIWLGRAAMLGFVSVVSVEVATGKGVLEN 464
           RCE S  + NSL +WLGR AM+GF   +SVE+ATGKG+LEN
Sbjct: 75  RCEQSANEGNSLDVWLGRLAMVGFAVAISVEIATGKGLLEN 115


>tr|B6SRW4|B6SRW4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 127

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 25/45 (55%), Positives = 32/45 (71%)
 Frame = +3

Query: 330 VGVARCEVSEEKSNSLVIWLGRAAMLGFVSVVSVEVATGKGVLEN 464
           + + RCE S +K      WLGRAAM+GF S ++VEVATGKG L+N
Sbjct: 48  LSIIRCEQSAKKGGGPDTWLGRAAMVGFASAIAVEVATGKGFLQN 92


>tr|B6SQP2|B6SQP2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 127

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = +3

Query: 330 VGVARCEVSEEKSNSLVIWLGRAAMLGFVSVVSVEVATGKGVLEN 464
           + + RCE S +K      WLGRAAM+GF S ++VEVATGKG L++
Sbjct: 46  LSIIRCEQSAKKGGGPDTWLGRAAMVGFASAIAVEVATGKGFLQS 90


>tr|A8IXP9|A8IXP9_BRACM Stress enhanced protein 1 OS=Brassica
           campestris PE=2 SV=1
          Length = 146

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = +3

Query: 342 RCEVSEEKSNSLVIWLGRAAMLGFVSVVSVEVATGKGVLEN 464
           R E S E  + L IWLGR AM+GF   +SVE+ATGKG+LEN
Sbjct: 73  RSEQSTEGGSGLDIWLGRGAMVGFAVAISVEIATGKGLLEN 113


>tr|Q9M7I9|Q9M7I9_ARATH Stress enhanced protein 1
           (At4g34190/F28A23_50) (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=SEP1 PE=2 SV=1
          Length = 146

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = +3

Query: 342 RCEVSEEKSNSLVIWLGRAAMLGFVSVVSVEVATGKGVLEN 464
           R E S E S+ L IWLGR AM+GF   ++VE++TGKG+LEN
Sbjct: 73  RSEQSTEGSSGLDIWLGRGAMVGFAVAITVEISTGKGLLEN 113


>tr|O49486|O49486_ARATH Putative uncharacterized protein AT4g34190
           OS=Arabidopsis thaliana GN=AT4g34190 PE=2 SV=1
          Length = 134

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = +3

Query: 342 RCEVSEEKSNSLVIWLGRAAMLGFVSVVSVEVATGKGVLEN 464
           R E S E S+ L IWLGR AM+GF   ++VE++TGKG+LEN
Sbjct: 61  RSEQSTEGSSGLDIWLGRGAMVGFAVAITVEISTGKGLLEN 101


>tr|A9PFE3|A9PFE3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 145

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 21/41 (51%), Positives = 31/41 (75%)
 Frame = +3

Query: 342 RCEVSEEKSNSLVIWLGRAAMLGFVSVVSVEVATGKGVLEN 464
           RCE + +  +S+ +W+GR AM+ F   +SVE+ATGKG+LEN
Sbjct: 72  RCEQNTQDGSSVDVWIGRLAMVAFAGAISVEIATGKGLLEN 112


>tr|B6U7S0|B6U7S0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 118

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 23/41 (56%), Positives = 28/41 (68%)
 Frame = +3

Query: 342 RCEVSEEKSNSLVIWLGRAAMLGFVSVVSVEVATGKGVLEN 464
           RCE   +    L +WL R AMLGFV  V+VE+ TGKGVL+N
Sbjct: 45  RCEQGAKGGGGLDVWLSRGAMLGFVGAVAVELTTGKGVLQN 85


>tr|A9TLE2|A9TLE2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=p1 PE=4 SV=1
          Length = 157

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 23/43 (53%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
 Frame = +3

Query: 342 RCEVSEEKSN--SLVIWLGRAAMLGFVSVVSVEVATGKGVLEN 464
           RC+ S E  N  SL  W+GR AMLGFV+ + +E+++GKGVLE+
Sbjct: 82  RCDQSTEGGNRRSLDTWIGRFAMLGFVAAIGIEISSGKGVLES 124