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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946191
Clone id YMU02A01NGRL0011_M12
Library
Length 336
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_M12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGCAGCAAGCAAGTCAGTGAAGGATGGTCCAACAAGAGAGCTGCCTTTGCAGCTCGCAGC
GGGCGCAAGCTGCAGATACAACCAAGCTCACCCACATGCGGGCGTATGCTTGCGAGTCCG
ATTGCCCACTTTGCCTCGCCACATACACTCCTTTCATCCCCACATACCCCAGTGGTGGCT
GGCTCTCCCAGCCAATATTAGCTTTACCATTTCCTTTATCACAAATAAGCATGTGAATTT
GTACACAAATGCAAGTTTTTTTCTTCTCTGTAAAGATGGCATGGTGCTTTTCTACCAAAA
AAAAAACGAANAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P36813
Definition sp|P36813|VE6_HPV49 Protein E6 OS=Human papillomavirus type 49
Align length 44
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946191|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_M12, 5'
         (296 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36813|VE6_HPV49 Protein E6 OS=Human papillomavirus type 49 G...    30   3.8  
sp|Q1LSS3|APAH_BAUCH Bis(5'-nucleosyl)-tetraphosphatase, symmetr...    30   3.8  
sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizos...    30   5.0  
sp|Q1GNC9|TRMB_SPHAL tRNA (guanine-N(7)-)-methyltransferase OS=S...    30   5.0  
sp|Q9HL75|SPEE_THEAC Probable spermidine synthase OS=Thermoplasm...    30   5.0  
sp|Q0SVK7|SPEE_CLOPS Spermidine synthase OS=Clostridium perfring...    30   5.0  
sp|Q8XMY8|SPEE_CLOPE Spermidine synthase OS=Clostridium perfring...    30   5.0  
sp|Q0TTQ7|SPEE_CLOP1 Spermidine synthase OS=Clostridium perfring...    30   5.0  
sp|O79555|NU4M_DINSE NADH-ubiquinone oxidoreductase chain 4 OS=D...    30   5.0  
sp|A5DI74|U507_PICGU UPF0507 protein PGUG_02975 OS=Pichia guilli...    29   6.5  
sp|Q97BN7|SPEE_THEVO Probable spermidine synthase OS=Thermoplasm...    29   6.5  
sp|Q18GT4|ILVC_HALWD Ketol-acid reductoisomerase OS=Haloquadratu...    29   6.5  
sp|Q31IL7|HSLV_THICR ATP-dependent protease hslV OS=Thiomicrospi...    29   6.5  
sp|A1B8D6|COBQ_PARDP Cobyric acid synthase OS=Paracoccus denitri...    29   6.5  
sp|Q6L1F4|SPEE_PICTO Probable spermidine synthase OS=Picrophilus...    29   8.5  
sp|A8MLM9|SPEE_ALKOO Spermidine synthase OS=Alkaliphilus oremlan...    29   8.5  

>sp|P36813|VE6_HPV49 Protein E6 OS=Human papillomavirus type 49
           GN=E6 PE=3 SV=1
          Length = 138

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 155 HPHIPQWWLALPANISFTISFITNKHVNLYTNASFFLLCKDGMV 286
           H +IP W + LP N  F   F+T + +  +    F LL KDG V
Sbjct: 13  HLNIPIWEVLLPCN--FCTGFLTYQELLEFDYKDFNLLWKDGFV 54


>sp|Q1LSS3|APAH_BAUCH Bis(5'-nucleosyl)-tetraphosphatase,
           symmetrical OS=Baumannia cicadellinicola subsp.
           Homalodisca coagulata GN=apaH PE=3 SV=1
          Length = 288

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 116 VRLPTLPRHIHSFHPHIPQWW---LALPANISFTISFITNKHVNLYTNASFFLLCKD 277
           +R  + P  +HS +  IP +W   L+  A + F+ +  T      + N    +LCKD
Sbjct: 143 LRSESYPLFLHSIYEDIPNYWSNELSYRARLQFSTNVFTRMRY-CFPNGKLDMLCKD 198


>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02
           OS=Schizosaccharomyces pombe GN=SPAC694.02 PE=2 SV=1
          Length = 1717

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
 Frame = +2

Query: 29  PTRELPLQLAAGASCRYNQAHPHAGVCL--------RVRLPTLPRHIHSFHPHIPQWWLA 184
           PT+ L  QL+A    R+N+ +PHAG  +        R+  PT  + + +  PH+ Q  L 
Sbjct: 788 PTKALVNQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITV-PHVLQSMLL 846

Query: 185 LPA 193
            PA
Sbjct: 847 QPA 849


>sp|Q1GNC9|TRMB_SPHAL tRNA (guanine-N(7)-)-methyltransferase
           OS=Sphingopyxis alaskensis GN=trmB PE=3 SV=2
          Length = 237

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +2

Query: 2   AASKSVKDGPTRELPLQLAAGASCRYNQAHPHAGVCLRVRLPTLPRHIHSFHPHIPQWWL 181
           A  + + DGP   +  +L  G   R+   HP   + LR  L  + RH H F       WL
Sbjct: 149 AKRRMMNDGPLDLIAAKLKPGGEFRFGTDHP---IYLRHALMVMRRHRHQFE------WL 199

Query: 182 ALPA 193
           A  A
Sbjct: 200 AKDA 203


>sp|Q9HL75|SPEE_THEAC Probable spermidine synthase OS=Thermoplasma
           acidophilum GN=speE PE=3 SV=1
          Length = 273

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +3

Query: 144 YTPFIPTYPSGGW---LSQPILALPFPLS 221
           YT FIPTYPSG W   ++ P    P P++
Sbjct: 219 YTGFIPTYPSGFWSFTVASPWTMKPRPVN 247


>sp|Q0SVK7|SPEE_CLOPS Spermidine synthase OS=Clostridium perfringens
           (strain SM101 / Type A) GN=speE PE=3 SV=1
          Length = 283

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +3

Query: 84  KLTHMRAYACESDCPLCLATYTPFIPTYPSGGWL 185
           K  H R   C    P+C   Y   IPTYPSG WL
Sbjct: 202 KRAHKRIKEC---FPVC-RVYQAHIPTYPSGHWL 231


>sp|Q8XMY8|SPEE_CLOPE Spermidine synthase OS=Clostridium perfringens
           GN=speE PE=3 SV=1
          Length = 283

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +3

Query: 84  KLTHMRAYACESDCPLCLATYTPFIPTYPSGGWL 185
           K  H R   C    P+C   Y   IPTYPSG WL
Sbjct: 202 KRAHKRIKEC---FPVC-RVYQAHIPTYPSGHWL 231


>sp|Q0TTQ7|SPEE_CLOP1 Spermidine synthase OS=Clostridium perfringens
           (strain ATCC 13124 / NCTC 8237 / Type A) GN=speE PE=3
           SV=1
          Length = 283

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +3

Query: 84  KLTHMRAYACESDCPLCLATYTPFIPTYPSGGWL 185
           K  H R   C    P+C   Y   IPTYPSG WL
Sbjct: 202 KRAHKRIKEC---FPVC-RVYQAHIPTYPSGHWL 231


>sp|O79555|NU4M_DINSE NADH-ubiquinone oxidoreductase chain 4
           OS=Dinodon semicarinatus GN=MT-ND4 PE=3 SV=1
          Length = 445

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
 Frame = +2

Query: 113 RVRLPTLPRHIHSFHPHIPQWWL-------ALPANISFTISFITNKHVNLYTNASFFLLC 271
           + R+  L R  HS  P I  WWL       A P +I+FT          L   +S F  C
Sbjct: 329 KTRIMILTRGFHSILPMITTWWLMTNLMNIATPPSINFT--------GELLIASSLFNWC 380

Query: 272 KDGMVLF 292
              ++LF
Sbjct: 381 PTTIILF 387


>sp|A5DI74|U507_PICGU UPF0507 protein PGUG_02975 OS=Pichia
           guilliermondii GN=PGUG_02975 PE=3 SV=2
          Length = 1133

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 146 HSFHPHIPQWWLALPANISFTISFITNKHVNLYTNASFFLLC 271
           HS  P + + WL  PAN S    F   +   L  N + FL+C
Sbjct: 831 HSLIPDVEKVWLNYPANGSVAPIFAKFRMNRLLENLNIFLVC 872
tr_hit_id B6KB75
Definition tr|B6KB75|B6KB75_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49
Align length 62
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946191|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_M12, 5'
         (296 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6KB75|B6KB75_TOXGO Putative uncharacterized protein OS=Toxop...    35   1.4  
tr|Q6S739|Q6S739_BRACM Voltage-dependent anion-selective channel...    33   7.0  
tr|Q6QTH2|Q6QTH2_BRARP Voltage-dependent anion-selective channel...    33   7.0  
tr|B3LCX6|B3LCX6_PLAKH Putative uncharacterized protein OS=Plasm...    33   7.0  
tr|A4HTB9|A4HTB9_LEIIN Putative uncharacterized protein OS=Leish...    33   7.0  
tr|Q1Q4E8|Q1Q4E8_9BACT Putative uncharacterized protein OS=Candi...    33   9.2  
tr|A0ZC89|A0ZC89_NODSP Molybdopterin binding domain protein OS=N...    33   9.2  
tr|Q84KP6|Q84KP6_CYAME DNA-directed RNA polymerase OS=Cyanidiosc...    33   9.2  

>tr|B6KB75|B6KB75_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_058450 PE=4 SV=1
          Length = 1985

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
 Frame = +3

Query: 51  SSQRAQAADTTKLTHMRAYACESDCPLCLATYTPFIPTYPSGGWLSQPILALPFP-LSQI 227
           +++R +AA+ +K +H R +  E+ C L  A+ + F P  P+G  ++ P+  +P P LS +
Sbjct: 508 TARRGEAAEASKSSHRRRHT-EASCALPFASQSSFTPEAPNG--IAPPVAGVPSPSLSDL 564

Query: 228 SM 233
           ++
Sbjct: 565 AL 566


>tr|Q6S739|Q6S739_BRACM Voltage-dependent anion-selective channel
           protein OS=Brassica campestris GN=VDAC PE=2 SV=1
          Length = 276

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 28/85 (32%), Positives = 40/85 (47%)
 Frame = +2

Query: 5   ASKSVKDGPTRELPLQLAAGASCRYNQAHPHAGVCLRVRLPTLPRHIHSFHPHIPQWWLA 184
           A+  +K   + ++P Q +A    +Y   HPHAG+C  V L   P  + +F   I    LA
Sbjct: 86  ATPGLKAIVSAKVPDQKSAKVELQY--MHPHAGICTSVGLTANP--VVNFSGVIGTSVLA 141

Query: 185 LPANISFTISFITNKHVNLYTNASF 259
           L  ++SF       KH N  T  SF
Sbjct: 142 LGTDVSFDTESGNFKHFN--TGVSF 164


>tr|Q6QTH2|Q6QTH2_BRARP Voltage-dependent anion-selective channel
           OS=Brassica rapa subsp. pekinensis PE=4 SV=1
          Length = 276

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 28/85 (32%), Positives = 40/85 (47%)
 Frame = +2

Query: 5   ASKSVKDGPTRELPLQLAAGASCRYNQAHPHAGVCLRVRLPTLPRHIHSFHPHIPQWWLA 184
           A+  +K   + ++P Q +A    +Y   HPHAG+C  V L   P  + +F   I    LA
Sbjct: 86  ATPGLKAIVSAKVPDQKSAKVELQY--MHPHAGICTSVGLTANP--VVNFSGVIGTSVLA 141

Query: 185 LPANISFTISFITNKHVNLYTNASF 259
           L  ++SF       KH N  T  SF
Sbjct: 142 LGTDVSFDTESGNFKHFN--TGVSF 164


>tr|B3LCX6|B3LCX6_PLAKH Putative uncharacterized protein OS=Plasmodium
            knowlesi (strain H) GN=PKH_145040 PE=4 SV=1
          Length = 2650

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +1

Query: 16   SEGWSNKRAAFAARSGRKLQIQPSSPTCGRMLASPIAHFASPHTLLSSPH 165
            S G S    AF+ R+   L   PS+   G   ASP+ H    H   SSPH
Sbjct: 1920 SAGSSGPTNAFSCRTSSALSSGPSTRLIGEADASPLEHIWCEHGFGSSPH 1969


>tr|A4HTB9|A4HTB9_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ07.1000 PE=4 SV=1
          Length = 2034

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 49  AARSGRKLQIQPSSPTCGRMLASPIAHFASPHTLLS--SPHTPVVAGSP 189
           AA +G            GR+LA+P AH   PH  LS   P + V +GSP
Sbjct: 390 AASTGAAAVCADGGSVAGRLLAAPTAHNLHPHRTLSPYPPPSSVASGSP 438


>tr|Q1Q4E8|Q1Q4E8_9BACT Putative uncharacterized protein
           OS=Candidatus Kuenenia stuttgartiensis GN=kuste4123 PE=4
           SV=1
          Length = 662

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 109 LASPIAHFASPHTLLSSPHTPVVAGSPSQY*LYHFLYH 222
           +A P+ HFA P   L+ PH+P  A    +Y  +H+  H
Sbjct: 114 VAEPMNHFAHPPHGLAEPHSPEAARMALRYSFFHWCLH 151


>tr|A0ZC89|A0ZC89_NODSP Molybdopterin binding domain protein
           OS=Nodularia spumigena CCY 9414 GN=N9414_00410 PE=4 SV=1
          Length = 415

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 61  GRKLQIQPSSPTCGRMLASPIAHFASPHTLLSSPHTPVVAGSP 189
           G K+ IQ  + + G+ L   +A F +PH+ L +PH+P+  G P
Sbjct: 266 GAKIHIQSVAISPGKPLT--VATFPTPHSPLPTPHSPIYFGLP 306


>tr|Q84KP6|Q84KP6_CYAME DNA-directed RNA polymerase OS=Cyanidioschyzon
            merolae GN=RPB1 PE=3 SV=1
          Length = 1819

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = +1

Query: 1    SSKQVSEGWSNKRAAFAARSGRKLQIQPSSPTCGRMLASPIAHFASPHTLLSSPHTPVVA 180
            SS  V+   S+   A++  S   +   PSSP      +SP+A+  S   +  SP +P VA
Sbjct: 1741 SSPNVAYSPSSPNVAYSP-SSPNVAYSPSSPNVAYSPSSPVAYSPSSPNVAYSPSSPNVA 1799

Query: 181  GSPS 192
             SPS
Sbjct: 1800 YSPS 1803