DK946196 [AcEST]

DK946196
Clone id	YMU02A01NGRL0011_M19
Library	YMU02
Length	495
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_M19. 5' end sequence.
Accession	DK946196
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL1Contig3
Sequence	TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAAACAATCTCGTCACTCATT CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC TAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA ATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC GTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGCTTTTTCCCTAAAAAAAAAAAAAA AAAAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	O43114
Definition	sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length	57
Score (bit)	31.2
E-value	2.3
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK946196\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0011_M19, 5' (466 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 31 2.3 sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 30 5.2 >sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2 Length = 455 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%) Frame = +1 Query: 247 LISTSGEINKEKNLWVDVDSLIVTKPQRI--------NLGKKVGINKSGFVKIIE 393 L+ T+ +++KE+N+W+++ D + RI ++ K GIN SGF+ ++E Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107 >sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia burgdorferi GN=recB PE=3 SV=1 Length = 1169 Score = 30.0 bits (66), Expect = 5.2 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +1 Query: 217 IVLVPQEILGLISTSGEINKEKNLWVDVDSLIVTKPQRINLGKKVGINKSGFV 381 IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G + Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	Q54CB7
Definition	tr\|Q54CB7\|Q54CB7_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length	55
Score (bit)	32.7
E-value	9.4
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK946196\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0011_M19, 5' (466 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|Q54CB7\|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty... 33 9.4 >tr\|Q54CB7\|Q54CB7_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1 Length = 955 Score = 32.7 bits (73), Expect = 9.4 Identities = 19/55 (34%), Positives = 28/55 (50%) Frame = +1 Query: 238 ILGLISTSGEINKEKNLWVDVDSLIVTKPQRINLGKKVGINKSGFVKIIEHLF 402 I+G ++ SGE+N E ++ DS +T IN+GK IN S + I F Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796