DK946197
Clone id YMU02A01NGRL0011_M20
Library
Length 330
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_M20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GGAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGAAAATTCTGAAAGTATGC
CGAAATTGCAGGTGTAATCGCGGACCATTACTCTTCTTTAAGAGGGGTATGTGACAACTT
GATGACATGGCAGCACAGACCAAAGTCACAGCAAAGCAGCCCATGTTTTCTACCATCTTT
TCTGCGACACATTCTGGGCCTGATGAAGTGGCATATTGTACGAAAATGCTGACGTGGCAA
TTTTAACGCGCTTGACTTTTTCTGGGCGCCAAGTTTTATTAAAGCATTCGCTTTTTGAAC
NAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q925B3
Definition sp|Q925B3|TRPM7_RAT Transient receptor potential cation channel subfamily M member 7 OS=Rattus norvegicus
Align length 38
Score (bit) 28.9
E-value 8.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946197|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_M20, 5'
(260 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q925B3|TRPM7_RAT Transient receptor potential cation channel ... 29 8.2
sp|Q923J1|TRPM7_MOUSE Transient receptor potential cation channe... 29 8.2
sp|Q96QT4|TRPM7_HUMAN Transient receptor potential cation channe... 29 8.2
sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo... 29 8.2

>sp|Q925B3|TRPM7_RAT Transient receptor potential cation channel
subfamily M member 7 OS=Rattus norvegicus GN=Trpm7 PE=1
SV=2
Length = 1862

Score = 28.9 bits (63), Expect = 8.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3

Query: 90 QHRPKSQQSSPCFLPSFLRHILGLMKWHIVRKC*RGNF 203
Q +PKS SP FL FL + +W V +C G F
Sbjct: 1687 QMKPKSIPYSPRFLEVFLLYCHSAGQWFAVEECMTGEF 1724


>sp|Q923J1|TRPM7_MOUSE Transient receptor potential cation channel
subfamily M member 7 OS=Mus musculus GN=Trpm7 PE=1 SV=1
Length = 1863

Score = 28.9 bits (63), Expect = 8.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3

Query: 90 QHRPKSQQSSPCFLPSFLRHILGLMKWHIVRKC*RGNF 203
Q +PKS SP FL FL + +W V +C G F
Sbjct: 1688 QMKPKSIPYSPRFLEVFLLYCHSAGQWFAVEECMTGEF 1725


>sp|Q96QT4|TRPM7_HUMAN Transient receptor potential cation channel
subfamily M member 7 OS=Homo sapiens GN=TRPM7 PE=1 SV=1
Length = 1865

Score = 28.9 bits (63), Expect = 8.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3

Query: 90 QHRPKSQQSSPCFLPSFLRHILGLMKWHIVRKC*RGNF 203
Q +PKS SP FL FL + +W V +C G F
Sbjct: 1690 QMKPKSIPYSPRFLEVFLLYCHSAGQWFAVEECMTGEF 1727


>sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo
sapiens GN=RNF123 PE=1 SV=1
Length = 1314

Score = 28.9 bits (63), Expect = 8.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3

Query: 54 SLRGVCDNLMTWQHRPKSQQSSPCFLPSFLRHILGLMKW 170
SL+ C + + QH Q P PSFL +L + W
Sbjct: 1001 SLQKPCPSTLLQQHMADLLQQGPDVAPSFLNSVLNQLNW 1039


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946197|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_M20, 5'
(260 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******