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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946208
Clone id YMU02A01NGRL0011_N09
Library
Length 288
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_N09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCACTCGACAGTACCATCAAGTGTTAGTCATGGCTTCTAAGAAGATAACGTGCATGC
TGGTGATAGTGATGGTGATGCTGGTGGCATACATGAGCAGCGTTGCTAATGCTGAAGTCC
TGGAAGAAAAGGGGGGCTTACCTACTAAATATCTGACGTGGCAGAAGGGATCTCCCAGAG
ACAAGAAGGGATGGTATATTGGAACGACAAGCAGGGAGGAGAAAGAATTGGGCAAAAATG
ATGAATAGAATAAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P60330
Definition sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus
Align length 62
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946208|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_N09, 5'
         (257 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=2 SV=1       30   4.8  
sp|Q4U2V3|CBPC1_DANRE Cytosolic carboxypeptidase 1 OS=Danio reri...    29   8.2  

>sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=2 SV=1
          Length = 2118

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -3

Query: 231  PILSPPCLSFQYTIPSCLWEIPSA--TSDI**VSPPFLPG-LQH*QRCSCMPPASPSLSP 61
            P L  P L    T+ +    I S+  +S +    PP  PG L H   C C+  ASP+LS 
Sbjct: 1094 PFLKGPALELVDTVLNEPGPIQSSVNSSPVLKTKPPPNPGFLSHLPSCDCLLCASPALSA 1153

Query: 60   AC 55
             C
Sbjct: 1154 VC 1155


>sp|Q4U2V3|CBPC1_DANRE Cytosolic carboxypeptidase 1 OS=Danio rerio
           GN=agtpbp1 PE=2 SV=1
          Length = 1153

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 39  SKKITCMLVIVMVMLVAYMSSVANAEVLEEKGGLPTK---YLTWQKGSPRDK 185
           SKK T +L + +  L A + S  NA    ++G LPT    Y  W +   R +
Sbjct: 212 SKKSTTLLKVALDTLAALLKSGMNARRAVDRGYLPTLLAIYQDWHRNDTRHR 263
tr_hit_id B7ATL1
Definition tr|B7ATL1|B7ATL1_9BACE Putative uncharacterized protein OS=Bacteroides pectinophilus ATCC 43243
Align length 65
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946208|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_N09, 5'
         (257 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7ATL1|B7ATL1_9BACE Putative uncharacterized protein OS=Bacte...    34   3.2  
tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subs...    34   4.2  
tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|Q5GXZ8|Q5GXZ8_XANOR GumL protein OS=Xanthomonas oryzae pv. or...    33   9.3  
tr|Q2P113|Q2P113_XANOM GumL protein OS=Xanthomonas oryzae pv. or...    33   9.3  
tr|B2SUK4|B2SUK4_XANOP Exopolysaccharide xanthan biosynthesis py...    33   9.3  

>tr|B7ATL1|B7ATL1_9BACE Putative uncharacterized protein
           OS=Bacteroides pectinophilus ATCC 43243 GN=BACPEC_01483
           PE=4 SV=1
          Length = 205

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = +3

Query: 48  ITCMLVIVMVMLVAYMSSVANAEVLEEKGGLPTKYLTWQKGSPRDKKGWYIGTTSREEKE 227
           I   LVI++++++A  ++ +N  +L  +  L  KY +WQ+   R +K        ++EKE
Sbjct: 142 INVALVIIIIVMIAITATSSNPNILNYETKLQDKYSSWQEELDRRQK-----VIEQKEKE 196

Query: 228 LGKND 242
           L  +D
Sbjct: 197 LHISD 201


>tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0245200 PE=4 SV=1
          Length = 897

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 252 YSIHHFCPILSPPCLSFQYTIPSCLWEIP 166
           YS    CP L P CLS QY  P+C   +P
Sbjct: 352 YSTQSICPGLPPTCLSDQYLSPNCTCAVP 380


>tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35675 PE=4 SV=1
          Length = 954

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 252 YSIHHFCPILSPPCLSFQYTIPSCLWEIP 166
           YS    CP L P CLS QY  P+C   +P
Sbjct: 427 YSTQSICPGLPPTCLSDQYLSPNCTCAVP 455


>tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032178 PE=4 SV=1
          Length = 893

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 252 YSIHHFCPILSPPCLSFQYTIPSCLWEIP 166
           YS    CP L P CLS QY  P+C   +P
Sbjct: 352 YSTQSICPGLPPTCLSDQYLSPNCTCAVP 380


>tr|Q5GXZ8|Q5GXZ8_XANOR GumL protein OS=Xanthomonas oryzae pv.
           oryzae GN=gumL PE=4 SV=1
          Length = 264

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 15  YHQVLVMAS-KKITCMLVIVMVMLVAYMSSVANAEVLEEKGGLPTKYLTWQKGSPRDKKG 191
           Y + LV  + K  T M  ++ V LV  +SS  +  +L E  G+P  YL W  G  R K  
Sbjct: 160 YKEHLVFPNVKPATFMSALLGVELV--VSSSLHGLILAEAYGIPAVYLDWGNGEDRFKYD 217

Query: 192 WYIGTTSREEKELGKNDE 245
            Y   T R +   G + E
Sbjct: 218 DYYNGTGRMQWHSGNSVE 235


>tr|Q2P113|Q2P113_XANOM GumL protein OS=Xanthomonas oryzae pv.
           oryzae (strain MAFF 311018) GN=XOO3009 PE=4 SV=1
          Length = 264

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 15  YHQVLVMAS-KKITCMLVIVMVMLVAYMSSVANAEVLEEKGGLPTKYLTWQKGSPRDKKG 191
           Y + LV  + K  T M  ++ V LV  +SS  +  +L E  G+P  YL W  G  R K  
Sbjct: 160 YKEHLVFPNVKPATFMSALLGVELV--VSSSLHGLILAEAYGIPAVYLDWGNGEDRFKYD 217

Query: 192 WYIGTTSREEKELGKNDE 245
            Y   T R +   G + E
Sbjct: 218 DYYNGTGRMQWHSGNSVE 235


>tr|B2SUK4|B2SUK4_XANOP Exopolysaccharide xanthan biosynthesis
           pyruvyltransferase GumL OS=Xanthomonas oryzae pv. oryzae
           (strain PXO99A) GN=gumL PE=4 SV=1
          Length = 264

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 15  YHQVLVMAS-KKITCMLVIVMVMLVAYMSSVANAEVLEEKGGLPTKYLTWQKGSPRDKKG 191
           Y + LV  + K  T M  ++ V LV  +SS  +  +L E  G+P  YL W  G  R K  
Sbjct: 160 YKEHLVFPNVKPATFMSALLGVELV--VSSSLHGLILAEAYGIPAVYLDWGNGEDRFKYD 217

Query: 192 WYIGTTSREEKELGKNDE 245
            Y   T R +   G + E
Sbjct: 218 DYYNGTGRMQWHSGNSVE 235