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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946215
Clone id YMU02A01NGRL0011_N18
Library
Length 222
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_N18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAACATTCAGCGGAGTTTATAAGAAGCTGACCGGCAAGGAAGTAGTGTTTGAGTACCCAG
TGCAAGAGTCTGCATGAGAATGCATCGAGGCGGCTTGTCTTGGTGTGATTTAGAATCCCA
CCCGAATTGAAGTGTATCAGAGGCCTCAATGTTGAGGCCAAAAGTTTTGTAGATCAGAGG
GAACCATTTCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P02362
Definition sp|P02362|RS7_XENLA 40S ribosomal protein S7 OS=Xenopus laevis
Align length 19
Score (bit) 40.4
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946215|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_N18, 5'
         (192 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P02362|RS7_XENLA 40S ribosomal protein S7 OS=Xenopus laevis G...    40   0.003
sp|P50894|RS7_FUGRU 40S ribosomal protein S7 OS=Fugu rubripes GN...    40   0.003
sp|Q949H0|RS7_HORVU 40S ribosomal protein S7 OS=Hordeum vulgare ...    40   0.004
sp|Q90YR7|RS7_ICTPU 40S ribosomal protein S7 OS=Ictalurus puncta...    39   0.006
sp|Q9C514|RS71_ARATH 40S ribosomal protein S7-1 OS=Arabidopsis t...    39   0.006
sp|P62084|RS7_DANRE 40S ribosomal protein S7 OS=Danio rerio GN=r...    39   0.008
sp|Q9M885|RS72_ARATH 40S ribosomal protein S7-2 OS=Arabidopsis t...    39   0.008
sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7 OS=Avicennia marina...    39   0.011
sp|Q8LD03|RS73_ARATH 40S ribosomal protein S7-3 OS=Arabidopsis t...    39   0.011
sp|Q9XH45|RS7_BRAOL 40S ribosomal protein S7 OS=Brassica olerace...    38   0.014
sp|Q9XET4|RS7_SECCE 40S ribosomal protein S7 OS=Secale cereale G...    38   0.018
sp|P62083|RS7_RAT 40S ribosomal protein S7 OS=Rattus norvegicus ...    38   0.018
sp|Q8LJU5|RS7_ORYSJ 40S ribosomal protein S7 OS=Oryza sativa sub...    38   0.018
sp|P62082|RS7_MOUSE 40S ribosomal protein S7 OS=Mus musculus GN=...    38   0.018
sp|P62081|RS7_HUMAN 40S ribosomal protein S7 OS=Homo sapiens GN=...    38   0.018
sp|Q5RT64|RS7_FELCA 40S ribosomal protein S7 OS=Felis silvestris...    38   0.018
sp|A6H769|RS7_BOVIN 40S ribosomal protein S7 OS=Bos taurus GN=RP...    38   0.018
sp|Q962S0|RS7_SPOFR 40S ribosomal protein S7 OS=Spodoptera frugi...    35   0.12 
sp|P48155|RS7_MANSE 40S ribosomal protein S7 OS=Manduca sexta GN...    35   0.12 
sp|P62085|RS7_DROYA 40S ribosomal protein S7 OS=Drosophila yakub...    34   0.20 
sp|Q9VA91|RS7_DROME 40S ribosomal protein S7 OS=Drosophila melan...    34   0.20 
sp|Q9NB21|RS7_CULQU 40S ribosomal protein S7 OS=Culex quinquefas...    34   0.20 
sp|P33514|RS7_ANOGA 40S ribosomal protein S7 OS=Anopheles gambia...    34   0.20 
sp|Q10101|RS7_SCHPO 40S ribosomal protein S7 OS=Schizosaccharomy...    33   0.34 
sp|Q54I41|RS7_DICDI 40S ribosomal protein S7 OS=Dictyostelium di...    33   0.34 
sp|O43105|RS7_NEUCR 40S ribosomal protein S7 OS=Neurospora crass...    33   0.45 
sp|Q23312|RS7_CAEEL 40S ribosomal protein S7 OS=Caenorhabditis e...    32   0.77 
sp|P48164|RS7B_YEAST 40S ribosomal protein S7-B OS=Saccharomyces...    32   0.77 
sp|P26786|RS7A_YEAST 40S ribosomal protein S7-A OS=Saccharomyces...    31   1.7  
sp|Q5C6R9|SJ381_SCHJA UPF0506 protein SJCHGC02381 OS=Schistosoma...    30   5.0  

>sp|P02362|RS7_XENLA 40S ribosomal protein S7 OS=Xenopus laevis
           GN=rps7 PE=2 SV=2
          Length = 194

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYP 59
           TFSGVYKKLTGK+VVFE+P
Sbjct: 172 TFSGVYKKLTGKDVVFEFP 190


>sp|P50894|RS7_FUGRU 40S ribosomal protein S7 OS=Fugu rubripes
           GN=rps7 PE=3 SV=1
          Length = 194

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYP 59
           TFSGVYKKLTGK+VVFE+P
Sbjct: 172 TFSGVYKKLTGKDVVFEFP 190


>sp|Q949H0|RS7_HORVU 40S ribosomal protein S7 OS=Hordeum vulgare
           GN=RPS7 PE=2 SV=1
          Length = 191

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYPVQESA 74
           TFS VY++L GK+VVFEYPV E+A
Sbjct: 168 TFSAVYRRLCGKDVVFEYPVAETA 191


>sp|Q90YR7|RS7_ICTPU 40S ribosomal protein S7 OS=Ictalurus punctatus
           GN=rps7 PE=2 SV=1
          Length = 194

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 16/19 (84%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYP 59
           TF+GVYKKLTGK+VVFE+P
Sbjct: 172 TFAGVYKKLTGKDVVFEFP 190


>sp|Q9C514|RS71_ARATH 40S ribosomal protein S7-1 OS=Arabidopsis
           thaliana GN=RPS7A PE=2 SV=1
          Length = 191

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +3

Query: 6   FSGVYKKLTGKEVVFEYPVQES 71
           FS VYKKLTGK+VVFE+P+ E+
Sbjct: 170 FSAVYKKLTGKDVVFEFPITEA 191


>sp|P62084|RS7_DANRE 40S ribosomal protein S7 OS=Danio rerio GN=rps7
           PE=2 SV=1
          Length = 194

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYP 59
           TF+GVYKKLTGK+V+FE+P
Sbjct: 172 TFAGVYKKLTGKDVIFEFP 190


>sp|Q9M885|RS72_ARATH 40S ribosomal protein S7-2 OS=Arabidopsis
           thaliana GN=RPS7B PE=2 SV=1
          Length = 191

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYPVQES 71
           T  GVY+KLTGK+VVFEYPV E+
Sbjct: 169 TMVGVYRKLTGKDVVFEYPVIEA 191


>sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7 OS=Avicennia marina
           GN=RPS7 PE=2 SV=1
          Length = 190

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 15/22 (68%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYPVQE 68
           TF+GVY+KL+GK+VVFE+P+ E
Sbjct: 169 TFAGVYRKLSGKDVVFEFPLTE 190


>sp|Q8LD03|RS73_ARATH 40S ribosomal protein S7-3 OS=Arabidopsis
           thaliana GN=RPS7C PE=2 SV=2
          Length = 190

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYPVQ 65
           T  GVY+KLTGK+VVFEYPV+
Sbjct: 169 TMVGVYRKLTGKDVVFEYPVE 189


>sp|Q9XH45|RS7_BRAOL 40S ribosomal protein S7 OS=Brassica oleracea
           GN=RPS7 PE=2 SV=1
          Length = 191

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYPVQE 68
           T  GVY+KLTGK+VVFEYPV +
Sbjct: 169 TMVGVYRKLTGKDVVFEYPVAD 190
tr_hit_id A9T1N9
Definition tr|A9T1N9|A9T1N9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 24
Score (bit) 47.4
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946215|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_N18, 5'
         (192 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T1N9|A9T1N9_PHYPA Predicted protein OS=Physcomitrella paten...    47   4e-04
tr|A9SXW3|A9SXW3_PHYPA Predicted protein OS=Physcomitrella paten...    46   8e-04
tr|A9TXW9|A9TXW9_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|A9S5I8|A9S5I8_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|B3TLX3|B3TLX3_ELAGV Ribosomal protein S7 OS=Elaeis guineensis...    41   0.034
tr|Q2YHL9|Q2YHL9_ONCMY 40S ribosomal protein S7 OS=Oncorhynchus ...    40   0.045
tr|Q2KKZ8|Q2KKZ8_SINCH 40S ribosomal protein S7 (Fragment) OS=Si...    40   0.045
tr|B5X8X3|B5X8X3_SALSA 40S ribosomal protein S7 OS=Salmo salar G...    40   0.045
tr|B5X818|B5X818_SALSA 40S ribosomal protein S7 OS=Salmo salar G...    40   0.045
tr|B5X7E8|B5X7E8_SALSA 40S ribosomal protein S7 OS=Salmo salar G...    40   0.045
tr|B5T1M3|B5T1M3_EPICO Ribosomal protein S7 OS=Epinephelus coioi...    40   0.045
tr|B5FXQ1|B5FXQ1_TAEGU Putative ribosomal protein S7 variant 1 O...    40   0.045
tr|B5DGA0|B5DGA0_SALSA 40S ribosomal protein S7 OS=Salmo salar G...    40   0.045
tr|A9JSD7|A9JSD7_XENTR LOC100135141 protein OS=Xenopus tropicali...    40   0.045
tr|A2Q0S2|A2Q0S2_SOLSE Ribosomal protein S7 OS=Solea senegalensi...    40   0.045
tr|B7FMQ4|B7FMQ4_MEDTR Putative uncharacterized protein OS=Medic...    40   0.045
tr|B7FGT0|B7FGT0_MEDTR Putative uncharacterized protein OS=Medic...    40   0.045
tr|A5AFQ8|A5AFQ8_VITVI Putative uncharacterized protein (Chromos...    40   0.045
tr|Q7XY18|Q7XY18_WHEAT Ribosomal protein S7 (Fragment) OS=Tritic...    40   0.058
tr|Q5I7K2|Q5I7K2_WHEAT Ribosomal protein S7 OS=Triticum aestivum...    40   0.058
tr|Q3HRX6|Q3HRX6_SOLTU Putative uncharacterized protein (40S rib...    40   0.058
tr|A9NQ60|A9NQ60_PICSI Putative uncharacterized protein OS=Picea...    40   0.058
tr|Q1KUR6|Q1KUR6_9ROSI Putative uncharacterized protein OS=Cleom...    40   0.076
tr|Q1KUM0|Q1KUM0_9ROSI Putative uncharacterized protein OS=Cleom...    40   0.076
tr|A7UIU8|A7UIU8_PERFV 40s ribosomal protein S7 OS=Perca flavesc...    39   0.100
tr|A5Z1P5|A5Z1P5_PAESU 40S ribosomal protein S7-like protein (Fr...    39   0.13 
tr|A9PBV3|A9PBV3_POPTR Putative uncharacterized protein OS=Popul...    39   0.17 
tr|A9PBB9|A9PBB9_POPTR Putative uncharacterized protein OS=Popul...    39   0.17 
tr|A8JGI9|A8JGI9_CHLRE Ribosomal protein S7 OS=Chlamydomonas rei...    38   0.22 
tr|A5AWN5|A5AWN5_VITVI Putative uncharacterized protein (Chromos...    38   0.22 

>tr|A9T1N9|A9T1N9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_86905 PE=4 SV=1
          Length = 195

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYPVQESA 74
           TF+GVYKKLTGKEV FEYP+QE+A
Sbjct: 170 TFAGVYKKLTGKEVTFEYPIQEAA 193


>tr|A9SXW3|A9SXW3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234408 PE=4 SV=1
          Length = 195

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 19/24 (79%), Positives = 23/24 (95%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYPVQESA 74
           TF+GVYKKLTGKEV FEYP+QE++
Sbjct: 170 TFAGVYKKLTGKEVTFEYPIQETS 193


>tr|A9TXW9|A9TXW9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172596 PE=4 SV=1
          Length = 195

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYPVQES 71
           T+SGVYKKLTGKEV FEYP+QE+
Sbjct: 170 TYSGVYKKLTGKEVTFEYPIQEA 192


>tr|A9S5I8|A9S5I8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_208894 PE=4 SV=1
          Length = 195

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYPVQES 71
           TF+GVYKKLTGKEV FEYP+QE+
Sbjct: 170 TFAGVYKKLTGKEVTFEYPIQEA 192


>tr|B3TLX3|B3TLX3_ELAGV Ribosomal protein S7 OS=Elaeis guineensis
           var. tenera PE=2 SV=1
          Length = 191

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYPVQES 71
           +F+GVY+KLTGK VVFEYPV E+
Sbjct: 169 SFAGVYRKLTGKNVVFEYPVTEA 191


>tr|Q2YHL9|Q2YHL9_ONCMY 40S ribosomal protein S7 OS=Oncorhynchus
           mykiss GN=rps7 PE=2 SV=1
          Length = 191

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYP 59
           TFSGVYKKLTGK+VVFE+P
Sbjct: 169 TFSGVYKKLTGKDVVFEFP 187


>tr|Q2KKZ8|Q2KKZ8_SINCH 40S ribosomal protein S7 (Fragment)
           OS=Siniperca chuatsi PE=2 SV=1
          Length = 73

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYP 59
           TFSGVYKKLTGK+VVFE+P
Sbjct: 51  TFSGVYKKLTGKDVVFEFP 69


>tr|B5X8X3|B5X8X3_SALSA 40S ribosomal protein S7 OS=Salmo salar
           GN=RS7 PE=2 SV=1
          Length = 194

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYP 59
           TFSGVYKKLTGK+VVFE+P
Sbjct: 172 TFSGVYKKLTGKDVVFEFP 190


>tr|B5X818|B5X818_SALSA 40S ribosomal protein S7 OS=Salmo salar
           GN=RS7 PE=2 SV=1
          Length = 194

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYP 59
           TFSGVYKKLTGK+VVFE+P
Sbjct: 172 TFSGVYKKLTGKDVVFEFP 190


>tr|B5X7E8|B5X7E8_SALSA 40S ribosomal protein S7 OS=Salmo salar
           GN=RS7 PE=2 SV=1
          Length = 194

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   TFSGVYKKLTGKEVVFEYP 59
           TFSGVYKKLTGK+VVFE+P
Sbjct: 172 TFSGVYKKLTGKDVVFEFP 190