DK946219 |
Clone id |
YMU02A01NGRL0011_N23 |
Library |
YMU02 |
Length |
487 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_N23. 5' end sequence. |
Accession |
DK946219 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL415Contig1 |
Sequence |
GACCTCCACTGATGAGGCCTCTACTACCTCTACAACAACCTCTGTGCAAACTGAAGAGCT TATTGCAGATTTAAAGGCTAAGTGGGATAGCATTGAGGACAAGACTAATCTACTTGTATA CGGAGGGGGTGCTCTTGTTGCAGTATGGTTGTCCTCCACGATTGTTGGGGCTGTAAATTC TGTGCCATTGCTTCCAACGGTTTTAGAGCTTGTAGGTTTGGGTTACACTGGTTGGTTTGT CTACAAGTACCTTCTTTTCAAGGAGAGCAGGAAGGAGTTGGTGAGAGATATTGAAGAGTT GAAGTCTAAGATTGCTGGAGGTGCTAAGGAATAAAAATGCATGCTGCACTCATCCTCCTG AAGCGCTTCCCCCCATGGCTGAACTAAGAGTGCCTTGTAAATAGTGGCACTTGACACAGG GGGCAAGGTGATTGATTGTGGGCTTTTTTGCTCTAGAGTTGTATCTATCCATGTGCCATT TTTTCAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O04616 |
Definition |
sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana |
Align length |
87 |
Score (bit) |
143.0 |
E-value |
4.0e-34 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946219|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0011_N23, 5' (487 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chlorop... 143 4e-34 sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, ... 74 5e-13 sp|Q8YX97|SYV_ANASP Valyl-tRNA synthetase OS=Anabaena sp. (strai... 44 4e-04 sp|Q9H379|YI012_HUMAN Putative uncharacterized protein PRO3102 O... 32 1.5 sp|Q54VQ6|SPCS_DICDI O-phosphoseryl-tRNA(Sec) selenium transfera... 32 1.5 sp|Q9M158|Y4105_ARATH Uncharacterized protein At4g01050 OS=Arabi... 32 2.0 sp|P16004|CD4_PANTR T-cell surface glycoprotein CD4 OS=Pan trogl... 31 2.6 sp|P01730|CD4_HUMAN T-cell surface glycoprotein CD4 OS=Homo sapi... 31 2.6 sp|Q5GH61|XK_RAT Membrane transport protein XK OS=Rattus norvegi... 31 3.4 sp|Q49LS5|XK_PANTR Membrane transport protein XK OS=Pan troglody... 31 3.4 sp|P51811|XK_HUMAN Membrane transport protein XK OS=Homo sapiens... 31 3.4 sp|Q55FG3|VP13C_DICDI Putative vacuolar protein sorting-associat... 30 7.6 sp|Q9KWN1|SDH_AGRTU Serine 3-dehydrogenase OS=Agrobacterium tume... 30 7.6 sp|P16320|NOF_DROME 120.7 kDa protein in NOF-FB transposable ele... 30 7.6 sp|Q9DBR1|XRN2_MOUSE 5'-3' exoribonuclease 2 OS=Mus musculus GN=... 29 9.8 sp|Q4PGU6|SLT11_USTMA Pre-mRNA-splicing factor SLT11 OS=Ustilago... 29 9.9 sp|Q3ICT8|HMUV_PSEHT Hemin import ATP-binding protein hmuV OS=Ps... 29 9.9
>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1 Length = 164
Score = 143 bits (361), Expect = 4e-34 Identities = 66/87 (75%), Positives = 76/87 (87%) Frame = +2
Query: 59 LIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPTVLELVGLGYTGWF 238 LI DLK KWD +E+K+ +L+YGGGA+VAVWLSS +VGA+NSVPLLP V+ELVGLGYTGWF Sbjct: 76 LITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWF 135
Query: 239 VYKYLLFKESRKELVRDIEELKSKIAG 319 VY+YLLFK SRKEL DIE LK KIAG Sbjct: 136 VYRYLLFKSSRKELAEDIESLKKKIAG 162
>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2 Length = 174
Score = 73.6 bits (179), Expect = 5e-13 Identities = 32/89 (35%), Positives = 54/89 (60%) Frame = +2
Query: 59 LIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPTVLELVGLGYTGWF 238 ++ + W+ ++DK + +VA+W S+ ++ A++ +PL+P VLELVG+GYTGWF Sbjct: 86 IVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWF 145
Query: 239 VYKYLLFKESRKELVRDIEELKSKIAGGA 325 YK L+FK R+ L ++ I G + Sbjct: 146 TYKNLVFKPDREALFEKVKSTYKDILGSS 174
>sp|Q8YX97|SYV_ANASP Valyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120) GN=valS PE=3 SV=1 Length = 1014
Score = 43.9 bits (102), Expect = 4e-04 Identities = 25/61 (40%), Positives = 36/61 (59%) Frame = +2
Query: 101 KTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPTVLELVGLGYTGWFVYKYLLFKESRKEL 280 KT LV G LV + ++ + V++VP L T E+VGLGY+ WFV + LL +RK Sbjct: 846 KTIGLVIAG--LVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARKRF 903
Query: 281 V 283 + Sbjct: 904 L 904
>sp|Q9H379|YI012_HUMAN Putative uncharacterized protein PRO3102 OS=Homo sapiens GN=PRO3102 PE=5 SV=1 Length = 93
Score = 32.0 bits (71), Expect = 1.5 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 10/53 (18%) Frame = +1
Query: 118 IRRGCSCCSMVVLHDC---------W-GCKFCAIASNGFRACRFGLHWLVCLQ 246 ++R CC + V+ C W GC+ C C F LHWL C+Q Sbjct: 47 MKRAPRCCCLAVVAQCPHHCPVLGCWSGCRCCCY-------CVFELHWLYCIQ 92
>sp|Q54VQ6|SPCS_DICDI O-phosphoseryl-tRNA(Sec) selenium transferase OS=Dictyostelium discoideum GN=sepsecs PE=3 SV=1 Length = 479
Score = 32.0 bits (71), Expect = 1.5 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Frame = +2
Query: 107 NLLVYGGGALVAV-------WLSSTIVGAVNSVPLLPTVLELVGLGYTGWFVYKYLLFKE 265 N +V GGA+++ +S G NS P+L + L+ +G GW L + Sbjct: 288 NFMVPVGGAIISGPNSEFIDQISRNYPGRANSSPILDVFITLLSMGKQGW-----LNLLK 342
Query: 266 SRKELVRDIEELKSKIA 316 RKEL+ E SK A Sbjct: 343 ERKELLIYFNEQLSKFA 359
>sp|Q9M158|Y4105_ARATH Uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050 PE=1 SV=2 Length = 466
Score = 31.6 bits (70), Expect = 2.0 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Frame = +2
Query: 59 LIADLKAKWDSIEDKTNLLVYG---GGALVAVWLSSTIVGAVNSVPLLPTVLELVGLGYT 229 L DL + DSI V+G G VA+ +++ +V + + T+L+L+G Sbjct: 255 LSLDLSSLTDSISG-----VFGESSDGVSVALGVAAAAGLSVFAFTEIETILQLLGSAAL 309
Query: 230 GWFVYKYLLFKESRKELVRDIEE-LKSKIA 316 K LLF E RK+ ++ ++E L +K+A Sbjct: 310 VQLAGKKLLFAEDRKQTLKQVDEFLNTKVA 339
>sp|P16004|CD4_PANTR T-cell surface glycoprotein CD4 OS=Pan troglodytes GN=CD4 PE=2 SV=1 Length = 458
Score = 31.2 bits (69), Expect = 2.6 Identities = 23/72 (31%), Positives = 32/72 (44%) Frame = -3
Query: 323 HLQQS*TSTLQYLSPTPSCSP*KEGTCRQTNQCNPNLQALKPLEAMAQNLQPQQSWRTTI 144 HL Q + TL SP P SP + CR N+Q K L LQ +W T+ Sbjct: 132 HLLQGQSLTLTLESP-PGSSPSVQ--CRSPR--GKNIQGGKTLSVSQLELQDSGTWTCTV 186
Query: 143 LQQEHPLRIQVD 108 LQ + + ++D Sbjct: 187 LQNQKKVEFKID 198
>sp|P01730|CD4_HUMAN T-cell surface glycoprotein CD4 OS=Homo sapiens GN=CD4 PE=1 SV=1 Length = 458
Score = 31.2 bits (69), Expect = 2.6 Identities = 23/72 (31%), Positives = 32/72 (44%) Frame = -3
Query: 323 HLQQS*TSTLQYLSPTPSCSP*KEGTCRQTNQCNPNLQALKPLEAMAQNLQPQQSWRTTI 144 HL Q + TL SP P SP + CR N+Q K L LQ +W T+ Sbjct: 132 HLLQGQSLTLTLESP-PGSSPSVQ--CRSPR--GKNIQGGKTLSVSQLELQDSGTWTCTV 186
Query: 143 LQQEHPLRIQVD 108 LQ + + ++D Sbjct: 187 LQNQKKVEFKID 198
>sp|Q5GH61|XK_RAT Membrane transport protein XK OS=Rattus norvegicus GN=Xk PE=1 SV=1 Length = 445
Score = 30.8 bits (68), Expect = 3.4 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = +2
Query: 62 IADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPTVLEL-----VGLGY 226 I +K K+D E K L Y + +W S I V + L +VL++ + + + Sbjct: 188 ILAIKIKYDEYEVKVKPLAY---VCIFLWRSFEIATRVIVLVLFTSVLKIWVVVVILVNF 244
Query: 227 TGWFVYKYLLFKESRKELVRDIEELKSKI 313 +F+Y ++LF S +IE+ +++ Sbjct: 245 FSFFLYPWILFWNSGSPFPENIEKALTRV 273
>sp|Q49LS5|XK_PANTR Membrane transport protein XK OS=Pan troglodytes GN=XK PE=2 SV=1 Length = 444
Score = 30.8 bits (68), Expect = 3.4 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = +2
Query: 62 IADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPTVLE-----LVGLGY 226 I +K K+D E K L Y + +W S I V + L +VL+ ++ + + Sbjct: 189 ILAIKIKYDEYEVKVKPLAY---VCIFLWRSFEIATRVVVLVLFTSVLKTWVVVIILINF 245
Query: 227 TGWFVYKYLLFKESRKELVRDIEELKSKI 313 +F+Y ++LF S +IE+ S++ Sbjct: 246 FSFFLYPWILFWCSGSPFPENIEKALSRV 274
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B4FTJ9 |
Definition |
tr|B4FTJ9|B4FTJ9_MAIZE Putative uncharacterized protein OS=Zea mays |
Align length |
90 |
Score (bit) |
145.0 |
E-value |
1.0e-33 |
Report |
|