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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946233
Clone id YMU02A01NGRL0011_O19
Library
Length 411
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_O19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CTGAACGACCGCAAGCGGCTCGCCACCAGCTATGCGAACACGGCGCGAGCCTATACCGTC
ACTTTTGGAACTTGCAAGTTTCCCCAGAATTTTACCGGCTGCCAAGATCTTGCTAAGAAA
ACGAATGTGCCTTTCCTCACCGATGATCTGAAGATAGAGTGTGAAGGCAAGGAGAAGTAC
AAGTGCGCATCCAATGTTTTCTGGAAGTGGTGAGAGGAGTTGTTGAATGGGCTGGGTAGT
TAGTTGCCTCTTGTTCATAACCAGATTGCTGAGCCCCCGGTTTCTTTGTCGAAATTATAT
CAGATTTGGATGAATATAGATATGCTCTTTTCTGCTGTTAAAAAAAACNAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P31093
Definition sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare
Align length 70
Score (bit) 126.0
E-value 3.0e-29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946233|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_O19, 5'
         (339 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, ch...   126   3e-29
sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N, ch...   125   7e-29
sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N, ch...   123   3e-28
sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N, ch...    85   1e-16
sp|B1Y1G9|SYA_LEPCP Alanyl-tRNA synthetase OS=Leptothrix cholodn...    32   0.75 
sp|Q9U7D5|ACM3_CAEEL Muscarinic acetylcholine receptor gar-3 OS=...    30   4.9  
sp|P36985|TXP11_PLETR Plectoxin-11 (Fragment) OS=Plectreurys tri...    29   6.4  
sp|P97471|SMAD4_MOUSE Mothers against decapentaplegic homolog 4 ...    29   6.4  
sp|A2SI90|SYA_METPP Alanyl-tRNA synthetase OS=Methylibium petrol...    29   8.3  
sp|Q63135|CRRY_RAT Complement regulatory protein Crry OS=Rattus ...    29   8.3  
sp|O70437|SMAD4_RAT Mothers against decapentaplegic homolog 4 OS...    29   8.4  
sp|Q9P6P3|PPK15_SCHPO Serine/threonine-protein kinase ppk15 OS=S...    29   8.4  

>sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N,
           chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1
          Length = 145

 Score =  126 bits (317), Expect = 3e-29
 Identities = 56/70 (80%), Positives = 62/70 (88%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KR ATS AN ARAYTV FG+CKFP NFTGCQDLAK+  VPF+TDDL+IECEGKEK+
Sbjct: 76  LNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKF 135

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 136 KCGSNVFWKW 145


>sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N,
           chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1
          Length = 112

 Score =  125 bits (314), Expect = 7e-29
 Identities = 55/70 (78%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KRLATS AN ARAYTV FG+C+FP NFTGCQDLAK+  VPF++DDL+IECEGKEK+
Sbjct: 43  LNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKF 102

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 103 KCGSNVFWKW 112


>sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N,
           chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2
          Length = 171

 Score =  123 bits (308), Expect = 3e-28
 Identities = 52/70 (74%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KRLATS AN ARA+TV FG+CKFP+NFTGCQDLAK+  VPF+++D+ +ECEGK+KY
Sbjct: 102 LNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKY 161

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 162 KCGSNVFWKW 171


>sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N,
           chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1
          Length = 139

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 38/64 (59%), Positives = 49/64 (76%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LN++KRLATSYAN AR+ TV  GTC+FP+NF GC++LA    V ++ +DLKIECEGK+  
Sbjct: 69  LNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAK 128

Query: 181 KCAS 192
            C S
Sbjct: 129 SCGS 132


>sp|B1Y1G9|SYA_LEPCP Alanyl-tRNA synthetase OS=Leptothrix cholodnii
           (strain ATCC 51168 / LMG 8142 / SP-6) GN=alaS PE=3 SV=1
          Length = 875

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 23/49 (46%), Positives = 31/49 (63%)
 Frame = -1

Query: 150 QIIGEERHIRFLSKILAAGKILGKLASSKSDGIGSRRVRIAGGEPLAVV 4
           +I G +  +R L K LAA K  GKLASS+ D + ++ V I G + LAVV
Sbjct: 731 RISGLQDQVRALEKELAALK--GKLASSQGDSLLAQTVDINGLKVLAVV 777


>sp|Q9U7D5|ACM3_CAEEL Muscarinic acetylcholine receptor gar-3
           OS=Caenorhabditis elegans GN=gar-3 PE=1 SV=2
          Length = 611

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = -3

Query: 313 SSKSDIIST---KKPGAQQSGYEQEATNYPAHSTTPLTTSR----KHWMRTCT 176
           S K D+ ST   K  G+ +    Q+   Y   S TP T+SR    K W+R CT
Sbjct: 301 SMKRDVSSTSIIKSSGSMRKKNNQDG--YVEDSVTPCTSSRNSKRKSWLRNCT 351


>sp|P36985|TXP11_PLETR Plectoxin-11 (Fragment) OS=Plectreurys
           tristis PE=1 SV=2
          Length = 79

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 100 CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNV 198
           C    ++ NVPFL D+ +++C G ++Y C  N+
Sbjct: 15  CTFAEEQVNVPFLPDEREVKCIGWQEY-CRGNL 46


>sp|P97471|SMAD4_MOUSE Mothers against decapentaplegic homolog 4
           OS=Mus musculus GN=Smad4 PE=2 SV=1
          Length = 551

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 298 IISTKKPGAQQSGYEQEATNYPAHSTTPLTTSR 200
           I S  +PG QQ+G+  + + Y  +STT  T SR
Sbjct: 239 IASGPQPGQQQNGFTAQPSTYHHNSTTTWTGSR 271


>sp|A2SI90|SYA_METPP Alanyl-tRNA synthetase OS=Methylibium
           petroleiphilum (strain PM1) GN=alaS PE=3 SV=1
          Length = 875

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = -1

Query: 126 IRFLSKILAAGKILGKLASSKSDGIGSRRVRIAGGEPLA 10
           +R L K LAA K  GKLASS+ DG+ ++ V + G + LA
Sbjct: 739 LRTLEKELAALK--GKLASSQGDGLLAQAVDVKGLKVLA 775


>sp|Q63135|CRRY_RAT Complement regulatory protein Crry OS=Rattus
           norvegicus GN=Crry PE=1 SV=1
          Length = 559

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +1

Query: 73  CKFPQNFTGCQDLAKKTNVPFLTDDLKIEC------EGKEKYKCASNVFW 204
           CK PQ+ +G Q   +     +  D++ +EC      EG  + +C S+  W
Sbjct: 357 CKLPQDMSGFQKGLQMKKDYYYGDNVALECEDGYTLEGSSQSQCQSDASW 406



 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +1

Query: 73  CKFPQNFTGCQDLAKKTNVPFLTDDLKIEC------EGKEKYKCASNVFW 204
           CK PQ+ +G Q   +     +  D++ +EC      EG  + +C S+  W
Sbjct: 419 CKLPQDMSGFQKGLQMKKDYYYGDNVALECEDGYTLEGSSQSQCQSDASW 468
tr_hit_id Q6XGX6
Definition tr|Q6XGX6|Q6XGX6_VITVI Putative photosystem I reaction center subunit N (Fragment) OS=Vitis vinifera
Align length 70
Score (bit) 129.0
E-value 1.0e-28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946233|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_O19, 5'
         (339 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6XGX6|Q6XGX6_VITVI Putative photosystem I reaction center su...   129   1e-28
tr|A7QB42|A7QB42_VITVI Chromosome chr4 scaffold_73, whole genome...   129   1e-28
tr|Q2QWN3|Q2QWN3_ORYSJ Os12g0189400 protein OS=Oryza sativa subs...   127   4e-28
tr|B8BNI3|B8BNI3_ORYSI Putative uncharacterized protein OS=Oryza...   127   4e-28
tr|A9PIQ3|A9PIQ3_POPJC Putative uncharacterized protein OS=Popul...   127   4e-28
tr|A9PFK1|A9PFK1_POPTR Putative uncharacterized protein OS=Popul...   127   4e-28
tr|Q84U30|Q84U30_PHAVU Photosystem I-N subunit OS=Phaseolus vulg...   126   5e-28
tr|B6TXS5|B6TXS5_MAIZE Photosystem I reaction center subunit N O...   125   8e-28
tr|B4FAC2|B4FAC2_MAIZE Photosystem I reaction center subunit N O...   125   1e-27
tr|A9NKZ3|A9NKZ3_PICSI Putative uncharacterized protein OS=Picea...   125   1e-27
tr|B8LK70|B8LK70_PICSI Putative uncharacterized protein OS=Picea...   118   1e-25
tr|Q9AXJ2|Q9AXJ2_CHLRE PsaN OS=Chlamydomonas reinhardtii GN=psaN...    86   1e-15
tr|Q1WLU5|Q1WLU5_CHLIN Chloroplast photosystem I subunit N OS=Ch...    86   1e-15
tr|A8I835|A8I835_CHLRE Photosystem I reaction center subunit N O...    86   1e-15
tr|A4RYB0|A4RYB0_OSTLU PsaN, PSI-N, photosystem I polypeptide OS...    78   2e-13
tr|Q017X3|Q017X3_OSTTA PSAN_VOLCA Photosystem I reaction centre ...    73   8e-12
tr|A3CFM0|A3CFM0_ORYSJ Putative uncharacterized protein OS=Oryza...    62   1e-08
tr|Q7M1U9|Q7M1U9_ORYSA Photosystem I 9K protein (Fragment) OS=Or...    55   2e-06
tr|B8YAB7|B8YAB7_9POAL Chloroplast photosystem I subunit N (Frag...    53   9e-06
tr|A9BKZ2|A9BKZ2_9CRYP Putative uncharacterized protein OS=Crypt...    36   0.84 
tr|Q6UAP7|Q6UAP7_TETNG Class I helical cytokine receptor number ...    34   4.2  

>tr|Q6XGX6|Q6XGX6_VITVI Putative photosystem I reaction center
           subunit N (Fragment) OS=Vitis vinifera GN=PsaN PE=2 SV=1
          Length = 85

 Score =  129 bits (323), Expect = 1e-28
 Identities = 56/70 (80%), Positives = 64/70 (91%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KRLATS AN ARAYTV FGTCKFP+NFTGCQDLAKK  VPFL++DL++ECEG++KY
Sbjct: 16  LNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKY 75

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 76  KCGSNVFWKW 85


>tr|A7QB42|A7QB42_VITVI Chromosome chr4 scaffold_73, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034797001
           PE=4 SV=1
          Length = 173

 Score =  129 bits (323), Expect = 1e-28
 Identities = 56/70 (80%), Positives = 64/70 (91%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KRLATS AN ARAYTV FGTCKFP+NFTGCQDLAKK  VPFL++DL++ECEG++KY
Sbjct: 104 LNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKY 163

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 164 KCGSNVFWKW 173


>tr|Q2QWN3|Q2QWN3_ORYSJ Os12g0189400 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0189400 PE=2 SV=1
          Length = 149

 Score =  127 bits (318), Expect = 4e-28
 Identities = 56/70 (80%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KRLATS AN ARAYTV FG+C+FP NFTGCQDLAK+  VPF++DDL+IECEGKEKY
Sbjct: 80  LNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKY 139

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 140 KCGSNVFWKW 149


>tr|B8BNI3|B8BNI3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37722 PE=4 SV=1
          Length = 144

 Score =  127 bits (318), Expect = 4e-28
 Identities = 56/70 (80%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KRLATS AN ARAYTV FG+C+FP NFTGCQDLAK+  VPF++DDL+IECEGKEKY
Sbjct: 75  LNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKY 134

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 135 KCGSNVFWKW 144


>tr|A9PIQ3|A9PIQ3_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 172

 Score =  127 bits (318), Expect = 4e-28
 Identities = 55/70 (78%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KRLATS AN ARA+TV FGTCKFP+NFTGCQDLAK+  VPF++DDL +ECEGK+KY
Sbjct: 103 LNDKKRLATSGANFARAFTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKY 162

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 163 KCGSNVFWKW 172


>tr|A9PFK1|A9PFK1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 172

 Score =  127 bits (318), Expect = 4e-28
 Identities = 55/70 (78%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KRLATS AN ARAYTV FGTCKFP+NFTGCQDLAK+  VPF+++DL +ECEGK+KY
Sbjct: 103 LNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLALECEGKDKY 162

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 163 KCGSNVFWKW 172


>tr|Q84U30|Q84U30_PHAVU Photosystem I-N subunit OS=Phaseolus
           vulgaris GN=PSI-N PE=1 SV=1
          Length = 170

 Score =  126 bits (317), Expect = 5e-28
 Identities = 55/70 (78%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KRLAT+ AN ARAYTV FG+CKFP+NFTGCQDLAK+  VPFL+DDL +ECEGK+KY
Sbjct: 101 LNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKY 160

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 161 KCGSNVFWKW 170


>tr|B6TXS5|B6TXS5_MAIZE Photosystem I reaction center subunit N
           OS=Zea mays PE=2 SV=1
          Length = 145

 Score =  125 bits (315), Expect = 8e-28
 Identities = 55/70 (78%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KR+ATS AN ARAYTV FG+C+FP NFTGCQDLAK+  VPFL+DDL+IECEGKEK+
Sbjct: 76  LNDKKRMATSAANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFLSDDLEIECEGKEKF 135

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 136 KCGSNVFWKW 145


>tr|B4FAC2|B4FAC2_MAIZE Photosystem I reaction center subunit N
           OS=Zea mays PE=2 SV=1
          Length = 145

 Score =  125 bits (314), Expect = 1e-27
 Identities = 55/70 (78%), Positives = 63/70 (90%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KRLATS AN ARAYTV FG+C+FP NFTGCQDLAK+  VPF++DDL+IECEGKEK+
Sbjct: 76  LNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKF 135

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 136 KCGSNVFWKW 145


>tr|A9NKZ3|A9NKZ3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 173

 Score =  125 bits (313), Expect = 1e-27
 Identities = 55/70 (78%), Positives = 62/70 (88%)
 Frame = +1

Query: 1   LNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKEKY 180
           LND+KRLATS AN ARAYTV FGTC+ P NFTGCQDLAK  NVPFL++D+K+ECEGK+KY
Sbjct: 104 LNDKKRLATSGANIARAYTVQFGTCQVPYNFTGCQDLAKIKNVPFLSEDMKLECEGKDKY 163

Query: 181 KCASNVFWKW 210
           KC SNVFWKW
Sbjct: 164 KCGSNVFWKW 173