DK946237 |
Clone id |
YMU02A01NGRL0011_O23 |
Library |
YMU02 |
Length |
582 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_O23. 5' end sequence. |
Accession |
DK946237 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL105Contig1 |
Sequence |
GAAGAAAAGAAACCTTGGAAACGAGTGGAAGAAGCCCTTTGCAGGCTCCTCCCACGCCAA AGGCATCGTTCTTGAGAAGATTGGTATCGAAGCCAAGCAGCCCAACTCTGCCATTCGAAA ATGTGCCAGGGTTCAGCTTATCAAGAATGGAAAGAAGATTGCGGCCTTTGTTCCAAATGA TGGCTGCCTGAACTACATTGAAGAAAATGATGAAGTGTTGATTGCTGGGTTCGGGCGTAA GGGACATGCTGTTGGTGATATTCCTGGAGTGCGGTTCAAGGTTGTGAAGGTATCTGGAGT GTCTCTCCTTGCCCTTTTCAAGGAAAAGAAGGAGAAACCAAGGTCTTAAGTTTTGAGAGG ATATGTGAAGGTCCAGCAGGACTCGTACCTTATTGATTAGCTTCCTGGGAATGTTCAGGA GAGATCATCACGAAAATTTTGTTAATCTCATGACATGAGCCAGCTGCTTCTTTTCGATGC ATGCGTTTCCTTCTTTTGAACCATGGGATGGAGAATCATTGTGTCAGTGAGGGTAAAGAT ACTTTGTCTGTCATGAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46297 |
Definition |
sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa |
Align length |
115 |
Score (bit) |
228.0 |
E-value |
2.0e-59 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946237|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0011_O23, 5' (555 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria anana... 228 2e-59 sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esul... 228 2e-59 sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis... 228 2e-59 sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis... 224 3e-58 sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor va... 202 1e-51 sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rube... 199 8e-51 sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera fru... 199 1e-50 sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardan... 199 1e-50 sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila mel... 198 2e-50 sp|P90707|RS23_BRUMA 40S ribosomal protein S23 OS=Brugia malayi ... 195 1e-49 sp|P32827|RS23_YEAST 40S ribosomal protein S23 OS=Saccharomyces ... 195 1e-49 sp|Q6YIA2|RS23_SACCA 40S ribosomal protein S23 OS=Saccharomyces ... 195 1e-49 sp|Q6YIA3|RS23_SACBA 40S ribosomal protein S23 OS=Saccharomyces ... 195 1e-49 sp|Q9HE74|RS23_NEUCR 40S ribosomal protein S23 OS=Neurospora cra... 195 1e-49 sp|Q6FLA8|RS23_CANGA 40S ribosomal protein S23 OS=Candida glabra... 195 1e-49 sp|P62268|RS23_RAT 40S ribosomal protein S23 OS=Rattus norvegicu... 194 2e-49 sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 OS=Sus scrofa GN=RP... 194 2e-49 sp|P62267|RS23_MOUSE 40S ribosomal protein S23 OS=Mus musculus G... 194 2e-49 sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 OS=Ictalurus punc... 194 2e-49 sp|P62266|RS23_HUMAN 40S ribosomal protein S23 OS=Homo sapiens G... 194 2e-49 sp|P62298|RS23_CHILA 40S ribosomal protein S23 OS=Chinchilla lan... 194 2e-49 sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 OS=Caenorhabditis... 194 2e-49 sp|Q3T199|RS23_BOVIN 40S ribosomal protein S23 OS=Bos taurus GN=... 194 2e-49 sp|Q873W8|RS23_ASPFU 40S ribosomal protein S23 OS=Aspergillus fu... 192 7e-49 sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23 OS=Ciona intestin... 190 3e-48 sp|P79057|RS23_SCHPO 40S ribosomal protein S23 OS=Schizosaccharo... 186 7e-47 sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23 OS=Gillichthys mi... 181 2e-45 sp|P06147|RS12_TETTH 40S ribosomal protein S12 OS=Tetrahymena th... 177 3e-44 sp|Q55A19|RS23_DICDI 40S ribosomal protein S23 OS=Dictyostelium ... 169 6e-42 sp|Q8SR65|RS23_ENCCU 40S ribosomal protein S23 OS=Encephalitozoo... 144 4e-34
>sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1 Length = 142
Score = 228 bits (580), Expect = 2e-59 Identities = 113/115 (98%), Positives = 114/115 (99%) Frame = +2
Query: 2 KKRNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND 181 KK +LGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND Sbjct: 28 KKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND 87
Query: 182 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 346 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS Sbjct: 88 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1 Length = 142
Score = 228 bits (580), Expect = 2e-59 Identities = 113/115 (98%), Positives = 114/115 (99%) Frame = +2
Query: 2 KKRNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND 181 KK +LGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND Sbjct: 28 KKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND 87
Query: 182 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 346 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS Sbjct: 88 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2 Length = 142
Score = 228 bits (580), Expect = 2e-59 Identities = 113/115 (98%), Positives = 114/115 (99%) Frame = +2
Query: 2 KKRNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND 181 KK +LGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND Sbjct: 28 KKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND 87
Query: 182 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 346 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS Sbjct: 88 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2 Length = 142
Score = 224 bits (570), Expect = 3e-58 Identities = 112/115 (97%), Positives = 112/115 (97%) Frame = +2
Query: 2 KKRNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND 181 KK N GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND Sbjct: 28 KKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND 87
Query: 182 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 346 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS Sbjct: 88 GCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1 Length = 143
Score = 202 bits (513), Expect = 1e-51 Identities = 98/116 (84%), Positives = 106/116 (91%), Gaps = 1/116 (0%) Frame = +2
Query: 2 KKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN 178 KK +LG WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP Sbjct: 28 KKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPR 87
Query: 179 DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 346 DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS Sbjct: 88 DGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1 Length = 143
Score = 199 bits (506), Expect = 8e-51 Identities = 96/116 (82%), Positives = 106/116 (91%), Gaps = 1/116 (0%) Frame = +2
Query: 2 KKRNLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN 178 KK +LG WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP Sbjct: 28 KKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPR 87
Query: 179 DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 346 DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS Sbjct: 88 DGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1 Length = 143
Score = 199 bits (505), Expect = 1e-50 Identities = 95/116 (81%), Positives = 106/116 (91%), Gaps = 1/116 (0%) Frame = +2
Query: 2 KKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN 178 KK ++G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP Sbjct: 28 KKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPR 87
Query: 179 DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 346 DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS Sbjct: 88 DGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
>sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1 Length = 143
Score = 199 bits (505), Expect = 1e-50 Identities = 95/116 (81%), Positives = 106/116 (91%), Gaps = 1/116 (0%) Frame = +2
Query: 2 KKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN 178 KK ++G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP Sbjct: 28 KKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPR 87
Query: 179 DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 346 DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS Sbjct: 88 DGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1 Length = 143
Score = 198 bits (503), Expect = 2e-50 Identities = 97/116 (83%), Positives = 105/116 (90%), Gaps = 1/116 (0%) Frame = +2
Query: 2 KKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN 178 KK +LG WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP Sbjct: 28 KKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPR 87
Query: 179 DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 346 DG LNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS Sbjct: 88 DGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1 Length = 143
Score = 195 bits (496), Expect = 1e-49 Identities = 94/116 (81%), Positives = 104/116 (89%), Gaps = 1/116 (0%) Frame = +2
Query: 2 KKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN 178 KK +LG WK PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPN Sbjct: 28 KKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87
Query: 179 DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 346 DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK+VKV+ SL+ALFK KKE+PRS Sbjct: 88 DGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PBK6 |
Definition |
tr|A9PBK6|A9PBK6_POPTR Putative uncharacterized protein OS=Populus trichocarpa |
Align length |
115 |
Score (bit) |
229.0 |
E-value |
6.0e-59 |
Report |
 |