DK946263 [AcEST]

DK946263
Clone id	YMU02A01NGRL0012_A10
Library	YMU02
Length	247
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_A10. 5' end sequence.
Accession	DK946263
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL2833Contig1
Sequence	GGTATGCTCCTATCGAGGGTGGCTCCCTGATCAGCCGATGTATGGTCTATTGCTATTGTT TTGGTCTCTACAGGGTATATGTTGAATACCCTGCAACTCGCCCTCAAGCCCCGTACAGAT CGTGCATGGTAACTACATGAGCTACCTCCTCTTGCTTGAACTACTCTGTAGCTCGTATGT ATGATTTGACCCTGTTTGTAAAGCTTCCCCCTTATTCTGAAAAAAAAAAAAAAAAAAAAA AAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q8GYP6
Definition	sp\|Q8GYP6\|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana
Align length	21
Score (bit)	31.6
E-value	1.3
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK946263\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_A10, 5' (219 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q8GYP6\|PPR49_ARATH Pentatricopeptide repeat-containing protei... 32 1.3 sp\|Q9SSF9\|PP123_ARATH Pentatricopeptide repeat-containing protei... 31 1.7 >sp\|Q8GYP6\|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1 Length = 860 Score = 31.6 bits (70), Expect = 1.3 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +2 Query: 14 RGWLPDQPMYGLLLLFWSLQG 76 + W+PD+P+YGLL+ W G Sbjct: 568 KNWIPDEPVYGLLVDLWGKAG 588 >sp\|Q9SSF9\|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1 Length = 855 Score = 31.2 bits (69), Expect = 1.7 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +2 Query: 14 RGWLPDQPMYGLLLLFWSLQG 76 + W+PD+P+YGLL+ W G Sbjct: 563 KNWVPDEPVYGLLVDLWGKAG 583
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	-
Definition	No hits.
Align length	-
Score (bit)	-
E-value	-
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK946263\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_A10, 5' (219 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done *** No hits found ****