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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946287
Clone id YMU02A01NGRL0012_B19
Library
Length 757
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_B19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGAGCTCCAGATTAGCAGAGCAAAGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCAT
CTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTC
AAAGAGCTTCTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCT
CGCCATCTCTAATGGCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAA
GAAGTTCGAGACTCTGTCCTACTTGCTGCCTTTGTCAAGTGGGCAGATTGCGAAGCAGGT
GGACTTCATGGTCCGAAAAGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGT
GTACCGAGAGCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAA
GCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGC
CAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTNAGAGGCAGGTGCA
GGTCTCCGGCTTCCTTGTCCAGAGGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAATTT
AGTTGGGATGAATGCCTGCTTTCCCTTTTCCACTGGCGCCTAAAAAGGCTTGCTCTTATG
AAGCTTTTTGGGGTCCCAGCCACCTTTTGCTTACATAAAGGGAAAAAACTTTCCCCCGGT
GGGGGGGCTTCAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 156
Score (bit) 179.0
E-value 1.0e-44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946287|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_B19, 5'
         (731 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   179   1e-44
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   175   2e-43
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   175   3e-43
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   174   4e-43
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   174   6e-43
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   174   6e-43
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   174   6e-43
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   173   8e-43
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   173   8e-43
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   172   2e-42
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   172   2e-42
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   172   2e-42
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   172   2e-42
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   172   2e-42
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   172   2e-42
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   172   2e-42
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   171   3e-42
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   171   3e-42
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   171   3e-42
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   171   5e-42
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   171   5e-42
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   170   6e-42
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   170   6e-42
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   170   8e-42
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   170   8e-42
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   170   8e-42
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha...   170   8e-42
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   169   1e-41
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   169   1e-41
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   169   2e-41

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  179 bits (454), Expect = 1e-44
 Identities = 85/156 (54%), Positives = 108/156 (69%), Gaps = 5/156 (3%)
 Frame = +2

Query: 116 LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLLPLSSG 283
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYL PLS  
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 284 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 460
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 461 REIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQRP 568
           +E+ EC KEYP AFIRV+GFD  RQVQ   F+V +P
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  175 bits (444), Expect = 2e-43
 Identities = 84/151 (55%), Positives = 107/151 (70%), Gaps = 4/151 (2%)
 Frame = +2

Query: 128 FSGLKATTLF-APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQ 298
           F+GLK+   F   K  N  +   SNG RV  M VW P   KK+ETLSYL PL+  Q+AK+
Sbjct: 25  FTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKE 84

Query: 299 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D+A V++E+AE
Sbjct: 85  VDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAE 144

Query: 476 CAKEYPEAFIRVLGFDAXRQVQVSGFLVQRP 568
           C KEYP+A+IR++GFD  RQVQ   F+  RP
Sbjct: 145 CKKEYPQAWIRIIGFDNVRQVQCIMFIASRP 175


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  175 bits (443), Expect = 3e-43
 Identities = 82/152 (53%), Positives = 107/152 (70%), Gaps = 5/152 (3%)
 Frame = +2

Query: 128 FSGLKATTLFAP--KSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAK 295
           F+GLK++  F    K+ N +    SNG RV+ M VW P   KKFETLSYL  L+  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 296 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQRP 568
           EC KEYP AFIR++GFD  RQVQ   F+  +P
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  174 bits (441), Expect = 4e-43
 Identities = 81/148 (54%), Positives = 101/148 (68%)
 Frame = +2

Query: 125 SFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQVD 304
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYL PL+  Q+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 305 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAK 484
           +++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 485 EYPEAFIRVLGFDAXRQVQVSGFLVQRP 568
            YP+ F R++GFD  RQVQ   FL  +P
Sbjct: 148 AYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  174 bits (440), Expect = 6e-43
 Identities = 84/157 (53%), Positives = 110/157 (70%), Gaps = 4/157 (2%)
 Frame = +2

Query: 116 LSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQ 286
           L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYL PL+  Q
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 287 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 463
           + K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 464 EIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQRPSV 574
           E+AEC  EYPEAFIR++GFD  RQVQ   F+   P V
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  174 bits (440), Expect = 6e-43
 Identities = 84/149 (56%), Positives = 104/149 (69%), Gaps = 1/149 (0%)
 Frame = +2

Query: 131 SGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQVDFM 310
           +GLKA              +NGSRVS M VW+PY+N KFETLSYL PLS   +AKQ+D++
Sbjct: 32  AGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYV 91

Query: 311 VRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEY 490
           ++ GW PCIEFD  G+V RE     GYYDGRYW MWKLPMFGC D+A+VLREI EC K Y
Sbjct: 92  IKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLY 151

Query: 491 -PEAFIRVLGFDAXRQVQVSGFLVQRPSV 574
             + +IR LGFD  RQVQ + F+V +P++
Sbjct: 152 GKKCYIRCLGFDNTRQVQCASFIVHQPTL 180


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  174 bits (440), Expect = 6e-43
 Identities = 85/152 (55%), Positives = 107/152 (70%), Gaps = 5/152 (3%)
 Frame = +2

Query: 128 FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAK 295
           F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYL PLSS Q+AK
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 296 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           +VD+++RK   PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D++ VL+E+ 
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQRP 568
           EC K YP AFIR++GFD  RQVQ+  F+  +P
Sbjct: 148 ECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  173 bits (439), Expect = 8e-43
 Identities = 83/156 (53%), Positives = 106/156 (67%), Gaps = 8/156 (5%)
 Frame = +2

Query: 125 SFSGLKATTLFAP--KSPNPLA------ISNGSRVSAMLVWKPYDNKKFETLSYLLPLSS 280
           +F+GLK+T  F    K  N  A       SNG RV  M VW P+ N KFETLSYL  L+ 
Sbjct: 15  AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 281 GQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 460
            Q+ K+V++++R  W PC+EFD  GS+ R++    GYYDGRYWVMWKLPMFGC +A+ V+
Sbjct: 75  EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 461 REIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQRP 568
            E+ ECAK YP+AFIRV+GFD  RQVQ   F+V +P
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain
           2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B
           PE=2 SV=2
          Length = 181

 Score =  173 bits (439), Expect = 8e-43
 Identities = 84/152 (55%), Positives = 107/152 (70%), Gaps = 5/152 (3%)
 Frame = +2

Query: 128 FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAK 295
           F+GLK++  F    K+ N +    SNG RVS M VW P   KKFETLSYL  LS  ++AK
Sbjct: 24  FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAK 83

Query: 296 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQRP 568
           EC KEYP AFIR++GFD  RQVQ   F+  +P
Sbjct: 144 ECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  172 bits (436), Expect = 2e-42
 Identities = 83/152 (54%), Positives = 109/152 (71%), Gaps = 4/152 (2%)
 Frame = +2

Query: 128 FSGLKATTLF--APKSPNPLAI-SNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQ 298
           F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYL PLSS  +AK+
Sbjct: 30  FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 299 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D++ VL+E+ E
Sbjct: 90  VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 476 CAKEYPEAFIRVLGFDAXRQVQVSGFLVQRPS 571
             K YP++FIR++GFD  RQVQ   F+  +P+
Sbjct: 150 AKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 152
Score (bit) 280.0
E-value 5.0e-74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946287|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_B19, 5'
         (731 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   280   5e-74
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   197   5e-49
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   194   4e-48
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   194   7e-48
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   194   7e-48
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   194   7e-48
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   191   4e-47
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   187   6e-46
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   187   8e-46
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   187   8e-46
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   184   5e-45
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   184   7e-45
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   183   1e-44
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   183   1e-44
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   182   3e-44
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   182   3e-44
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   181   4e-44
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   181   4e-44
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   179   2e-43
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   179   2e-43
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   178   3e-43
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   177   5e-43
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   177   8e-43
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   175   2e-42
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   175   3e-42
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   175   3e-42
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   174   4e-42
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   174   5e-42
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   174   7e-42
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   173   9e-42

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  280 bits (717), Expect = 5e-74
 Identities = 131/152 (86%), Positives = 142/152 (93%)
 Frame = +2

Query: 116 LSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAK 295
           LSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYL PL++ QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 476 CAKEYPEAFIRVLGFDAXRQVQVSGFLVQRPS 571
           CAKEYP AFIRVLGFDA RQVQV+GFLV++PS
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  197 bits (502), Expect = 5e-49
 Identities = 94/153 (61%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQV 301
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYL PL+  QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQRPS 571
           EC + +P  ++RVLGFD+ +QVQ+ GFLV RP+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  194 bits (494), Expect = 4e-48
 Identities = 93/153 (60%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQV 301
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYL PL+  QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQRPS 571
           EC + +P  ++RVLGFD+ +QVQ+ GFLV RP+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  194 bits (492), Expect = 7e-48
 Identities = 90/153 (58%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQV 301
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYL PL+  QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQRPS 571
           EC  ++P  ++RVLGFD+ +QVQ+ GFLV RP+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  194 bits (492), Expect = 7e-48
 Identities = 91/153 (59%), Positives = 111/153 (72%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQV 301
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYL PLS  QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQRPS 571
           EC   YP  ++RVLGFD+ +QVQ+ GFLV RP+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  194 bits (492), Expect = 7e-48
 Identities = 91/153 (59%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQV 301
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYL PL+  QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQRPS 571
           EC  ++P  ++RVLGFD+ +QVQ+ GFLV RP+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  191 bits (485), Expect = 4e-47
 Identities = 88/153 (57%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQV 301
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYL PL+  +IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQRPS 571
           EC  ++P  ++RVLGFD+ +QVQ+ GFLV RP+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  187 bits (475), Expect = 6e-46
 Identities = 87/150 (58%), Positives = 107/150 (71%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQV 301
           K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYL PLS   IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAXRQVQVSGFLVQRPS 571
           K +P  F+RVLGFD  +QVQ+ GFLV RP+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  187 bits (474), Expect = 8e-46
 Identities = 88/150 (58%), Positives = 107/150 (71%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQV 301
           K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYL PLS   IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           D+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAXRQVQVSGFLVQRPS 571
           K +P  F+RVLGFD  +QVQ+ GFLV RP+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  187 bits (474), Expect = 8e-46
 Identities = 88/150 (58%), Positives = 108/150 (72%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLLPLSSGQIAKQV 301
           K+FSGLK+ TLF+ +S    ++ NGSRV+ M VW P    KFET SYL PLS   IAKQV
Sbjct: 32  KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           ++M+++   PC+EFD    V RE+    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAXRQVQVSGFLVQRPS 571
           K +P  F+RVLGFD  +QVQ+ GFLV RP+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181