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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946289
Clone id YMU02A01NGRL0012_B21
Library
Length 420
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_B21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACATGCTGCGTGATGAGTTAGAACTAGCAATGGCTCTTGCTGGATGTACATCAGTGAAGG
AGATCACTCGCTCCCATGTGAAGACCGAGTATGACATGATACGGGCTGCGTCTAGGCTGT
AGTTCACACGACAACAGGCATCGGTGACTTGATGTGGAGGGGTTGCTCATGAGGTCTTAG
CCCGGTCGCTTGGAGTTAATGTATAGAGTTTACAGCTCCTAGGGTAGTGGTTGAACTTTA
TTCCTTGTGTGCGGTTGATTATGAACAGGGCTGGTAATTCTTTACAATTCAGCTAGTGTA
TGGGGCCGGTCATTTCTCCTAGCATAAGTGGCCATTGCTGCTACATCTTGTTGTTTTACT
ACTATTTGTAAGAGTGTAATTTTCTCCGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9LRR9
Definition sp|Q9LRR9|GOX2_ARATH Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana
Align length 39
Score (bit) 53.5
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946289|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_B21, 5'
         (390 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LRR9|GOX2_ARATH Probable peroxisomal (S)-2-hydroxy-acid oxi...    54   3e-07
sp|Q9LRS0|GOX1_ARATH Probable peroxisomal (S)-2-hydroxy-acid oxi...    51   2e-06
sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Sp...    48   2e-05
sp|Q7N475|Y2479_PHOLL UPF0259 membrane protein plu2479 OS=Photor...    30   2.9  
sp|Q9WU19|HAOX1_MOUSE Hydroxyacid oxidase 1 OS=Mus musculus GN=H...    30   2.9  
sp|Q9UJM8|HAOX1_HUMAN Hydroxyacid oxidase 1 OS=Homo sapiens GN=H...    30   2.9  
sp|P34438|YL58_CAEEL Uncharacterized protein F44E2.8 OS=Caenorha...    29   8.4  

>sp|Q9LRR9|GOX2_ARATH Probable peroxisomal (S)-2-hydroxy-acid
           oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1
          Length = 367

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYDMIRAASRL 119
           MLRDE EL MAL+GC S+KEI+R+H+ TE+D  R ++RL
Sbjct: 329 MLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 367


>sp|Q9LRS0|GOX1_ARATH Probable peroxisomal (S)-2-hydroxy-acid
           oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1
          Length = 367

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYDMIRAASRL 119
           MLRDE EL MAL+GC S+ EITR+H+ TE+D  R   RL
Sbjct: 329 MLRDEFELTMALSGCRSLSEITRNHIVTEWDTPRHLPRL 367


>sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase
           OS=Spinacia oleracea PE=1 SV=1
          Length = 369

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 23/41 (56%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYD--MIRAASRL 119
           M+RDE EL MAL+GC S+KEI+RSH+  ++D    RA +RL
Sbjct: 329 MMRDEFELTMALSGCRSLKEISRSHIAADWDGPSSRAVARL 369


>sp|Q7N475|Y2479_PHOLL UPF0259 membrane protein plu2479
           OS=Photorhabdus luminescens subsp. laumondii GN=plu2479
           PE=3 SV=1
          Length = 256

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +3

Query: 6   LRDELELAMALAGCTSVKEITRSHVKTEYDMI-RAASRL*FTRQQASVT*CGGVAHEVLA 182
           L  E E   A +G   ++E+       +  MI RA     F+    SV   GGV   V A
Sbjct: 50  LLTEAEFTFATSGKAGIQELVSQMTPEQQSMIMRAGIGTIFSSMIGSVLLVGGVLTLVAA 109

Query: 183 RSLGVNV*SLQLLG*WLNFIPCVRLIM 263
            S G  + SLQ +G   + +P + L++
Sbjct: 110 VSAGNRISSLQAIGLSASQLPKLFLLL 136


>sp|Q9WU19|HAOX1_MOUSE Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1
           PE=2 SV=1
          Length = 370

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVK 83
           +L++E  LAMAL+GC +VK I ++ V+
Sbjct: 335 ILKEEFRLAMALSGCQNVKVIDKTLVR 361


>sp|Q9UJM8|HAOX1_HUMAN Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1
           PE=1 SV=1
          Length = 370

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVK 83
           +L++E  LAMAL+GC +VK I ++ V+
Sbjct: 335 ILKEEFRLAMALSGCQNVKVIDKTLVR 361


>sp|P34438|YL58_CAEEL Uncharacterized protein F44E2.8
           OS=Caenorhabditis elegans GN=F44E2.8 PE=2 SV=2
          Length = 242

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = -3

Query: 307 GPIH*LNCKELPALFIINRTQGIKFNHYPRSCKLYTLT-PSDRAKTS*ATPPHQVTDACC 131
           GP H L+    P   +++  +     HY ++CKLY LT     A+   +  P +V  A  
Sbjct: 61  GPTHYLSAL-YPCTVVVDGNEYNSVEHYYQACKLYVLTGEQSAAQLKASETPIEVKKATK 119

Query: 130 RVNYSLDAARIMSYSVFTWE 71
            +   L  A+I +  +  W+
Sbjct: 120 NI---LKEAKIPAKKISAWK 136
tr_hit_id B8AUI7
Definition tr|B8AUI7|B8AUI7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 39
Score (bit) 60.8
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946289|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_B21, 5'
         (390 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8AUI7|B8AUI7_ORYSI Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|A3AXK1|A3AXK1_ORYSJ Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|Q8VX88|Q8VX88_PINPS Putative (S)-2-hydroxy-acid oxidase (Frag...    59   2e-07
tr|B8LPP7|B8LPP7_PICSI Putative uncharacterized protein OS=Picea...    59   2e-07
tr|A9NXW1|A9NXW1_PICSI Putative uncharacterized protein OS=Picea...    59   2e-07
tr|A9NLU2|A9NLU2_PICSI Putative uncharacterized protein OS=Picea...    59   2e-07
tr|Q84LB8|Q84LB8_ZANAE Glycolate oxidase OS=Zantedeschia aethiop...    54   5e-06
tr|Q56ZN0|Q56ZN0_ARATH Glycolate oxidase like protein (Fragment)...    54   5e-06
tr|Q41903|Q41903_ARATH (S)-2-hydroxy-acid oxidase (Fragment) OS=...    54   5e-06
tr|Q2V3V9|Q2V3V9_ARATH Uncharacterized protein At3g14420.3 OS=Ar...    54   5e-06
tr|B3H4B8|B3H4B8_ARATH Uncharacterized protein At3g14420.6 OS=Ar...    54   5e-06
tr|A8MS37|A8MS37_ARATH Uncharacterized protein At3g14420.5 OS=Ar...    54   5e-06
tr|Q7FAS1|Q7FAS1_ORYSJ Os04g0623500 protein OS=Oryza sativa subs...    52   1e-05
tr|Q01KC3|Q01KC3_ORYSA H0215F08.7 protein OS=Oryza sativa GN=H02...    52   1e-05
tr|O24500|O24500_ARATH Glycolate oxidase (Fragment) OS=Arabidops...    52   1e-05
tr|B8AUI3|B8AUI3_ORYSI Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|B7E4S4|B7E4S4_ORYSJ cDNA clone:001-002-F07, full insert seque...    52   1e-05
tr|A3AXK0|A3AXK0_ORYSJ Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|Q43775|Q43775_SOLLC Glycolate oxidase (Fragment) OS=Solanum l...    52   1e-05
tr|B4FCA3|B4FCA3_MAIZE Putative uncharacterized protein OS=Zea m...    52   2e-05
tr|Q19U05|Q19U05_9MAGN Glycolate oxidase (Fragment) OS=Pachysand...    51   3e-05
tr|B7ZWW8|B7ZWW8_MAIZE Putative uncharacterized protein OS=Zea m...    51   3e-05
tr|B7FIQ0|B7FIQ0_MEDTR Putative uncharacterized protein OS=Medic...    51   3e-05
tr|B6UCS5|B6UCS5_MAIZE Hydroxyacid oxidase 1 OS=Zea mays PE=2 SV=1     51   3e-05
tr|Q56XF8|Q56XF8_ARATH Glycolate oxidase like protein (Fragment)...    51   3e-05
tr|B4FW41|B4FW41_MAIZE Putative uncharacterized protein OS=Zea m...    51   3e-05
tr|B4FH95|B4FH95_MAIZE Putative uncharacterized protein OS=Zea m...    51   3e-05
tr|B0M1B1|B0M1B1_SOYBN Peroxisomal glycolate oxidase OS=Glycine ...    50   4e-05
tr|A9RWX7|A9RWX7_PHYPA Predicted protein OS=Physcomitrella paten...    50   4e-05
tr|B0M1A2|B0M1A2_SOYBN Peroxisomal glycolate oxidase OS=Glycine ...    50   6e-05

>tr|B8AUI7|B8AUI7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_17480 PE=4 SV=1
          Length = 285

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 30/39 (76%), Positives = 32/39 (82%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYDMIRAASRL 119
           MLRDELE+ MAL+GCTSVKEITR HV TE D IR  SRL
Sbjct: 247 MLRDELEITMALSGCTSVKEITRGHVVTESDRIRRCSRL 285


>tr|A3AXK1|A3AXK1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_015523 PE=4 SV=1
          Length = 428

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 30/39 (76%), Positives = 32/39 (82%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYDMIRAASRL 119
           MLRDELE+ MAL+GCTSVKEITR HV TE D IR  SRL
Sbjct: 232 MLRDELEITMALSGCTSVKEITRGHVVTESDRIRRCSRL 270


>tr|Q8VX88|Q8VX88_PINPS Putative (S)-2-hydroxy-acid oxidase
           (Fragment) OS=Pinus pinaster GN=glycolate oxidase PE=2
           SV=1
          Length = 79

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYDMIRAASRL 119
           MLRDE EL MALAGC SVKEI R++++TE DMIR+ SRL
Sbjct: 41  MLRDEFELTMALAGCCSVKEINRNYIQTEADMIRSISRL 79


>tr|B8LPP7|B8LPP7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 367

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYDMIRAASRL 119
           MLRDE EL MALAGC SVKEI R++++TE DMIR+ SRL
Sbjct: 329 MLRDEFELTMALAGCCSVKEINRNYIQTEADMIRSISRL 367


>tr|A9NXW1|A9NXW1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 367

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYDMIRAASRL 119
           MLRDE EL MALAGC SVKEI R++++TE DMIR+ SRL
Sbjct: 329 MLRDEFELTMALAGCCSVKEINRNYIQTEADMIRSISRL 367


>tr|A9NLU2|A9NLU2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 236

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYDMIRAASRL 119
           MLRDE EL MALAGC SVKEI R++++TE DMIR+ SRL
Sbjct: 198 MLRDEFELTMALAGCCSVKEINRNYIQTEADMIRSISRL 236


>tr|Q84LB8|Q84LB8_ZANAE Glycolate oxidase OS=Zantedeschia aethiopica
           GN=gox PE=2 SV=1
          Length = 367

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 25/39 (64%), Positives = 32/39 (82%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYDMIRAASRL 119
           MLR+E EL MAL+GC S+K+ITR+H+ TE D+ R ASRL
Sbjct: 329 MLREEFELTMALSGCLSLKDITRNHILTEGDVHRTASRL 367


>tr|Q56ZN0|Q56ZN0_ARATH Glycolate oxidase like protein (Fragment)
           OS=Arabidopsis thaliana GN=At3g14420 PE=2 SV=1
          Length = 80

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYDMIRAASRL 119
           MLRDE EL MAL+GC S+KEI+R+H+ TE+D  R ++RL
Sbjct: 42  MLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 80


>tr|Q41903|Q41903_ARATH (S)-2-hydroxy-acid oxidase (Fragment)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 86

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYDMIRAASRL 119
           MLRDE EL MAL+GC S+KEI+R+H+ TE+D  R ++RL
Sbjct: 48  MLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 86


>tr|Q2V3V9|Q2V3V9_ARATH Uncharacterized protein At3g14420.3
           OS=Arabidopsis thaliana GN=At3g14420 PE=4 SV=2
          Length = 367

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = +3

Query: 3   MLRDELELAMALAGCTSVKEITRSHVKTEYDMIRAASRL 119
           MLRDE EL MAL+GC S+KEI+R+H+ TE+D  R ++RL
Sbjct: 329 MLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 367