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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946316
Clone id YMU02A01NGRL0012_D07
Library
Length 572
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_D07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTCTCCACACGCCTCATTCGCGCGCAGAGAGAGCTGCCGAGCATAGCCAGTGGCCATGG
CAGTGATGGCAGCAACAGACATGGCTTTGAGTGCGATGCCTTCCATGGCAGCAGTCACAA
GGGCAGACTGCAAGCCATCGAGGAGGGCGGTATCGCTGGGTAGGAAGATGAAGAGCTTCT
CAGGTATGAAATCAGAGAGTCGAATTGGCAGGCTCGGGCTTTCTGAAAGCACAGAGGAGC
ATTTTGCGAGGGCTGTGTTGGCGCACGCGAGAAGTACGGCTGGGAGCAGAGGGGGGGCTG
CTTCTTCTACTTGCAATGTTGCAGACGAGATCTTTCGCTTGGTGCCCATCATGAGTGGCC
TTGTGCTCATTGGCATCGCTCTTGGCTTTGTCCTCCTCCGAGTTGGGGCTGCTCTTGAGG
AATCTGAGTAAATTGAACCCTCTTCCTCTCTGACCCTACCTGCATTTCTTGTCATAATTT
GTAATTCCATGAAAATGTAATCAGTTCTTTTGTGAATGTGCTCACATGTATAATGTATTT
GCAACCCGCGAGAGTGCGAGGTAATGTCTCTG
■■Homology search results ■■ -
sp_hit_id P80883
Definition sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea
Align length 34
Score (bit) 45.1
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946316|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_D07, 5'
         (572 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment...    45   3e-04
sp|Q9QY30|ABCBB_MOUSE Bile salt export pump OS=Mus musculus GN=A...    34   0.59 
sp|P56254|KAB1_OLDAF Kalata-B1 OS=Oldenlandia affinis GN=OAK1 PE...    31   3.8  
sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subuni...    31   5.0  
sp|P22293|SUS_DROME Protein suppressor of sable OS=Drosophila me...    30   6.5  
sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Hom...    30   6.5  

>sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment)
           OS=Spinacia oleracea GN=petM PE=1 SV=1
          Length = 36

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +3

Query: 315 NVADEIFRLVPIMSGLVLIGIALGFVLLRVGAAL 416
           N A EIFR+  +M+GL L+G+A+GFVLLR+ A +
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATV 34


>sp|Q9QY30|ABCBB_MOUSE Bile salt export pump OS=Mus musculus
           GN=Abcb11 PE=1 SV=1
          Length = 1321

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +2

Query: 68  GSNRHGFECDAFHGSSHKGRLQXXXXXXXXXXXXXXLLRYEIRESNW 208
           G   H FE D FH +  K RLQ              L R+   + NW
Sbjct: 14  GEENHAFESDGFHNNDKKSRLQDKKKGEGARVGFFELFRFSSSKDNW 60


>sp|P56254|KAB1_OLDAF Kalata-B1 OS=Oldenlandia affinis GN=OAK1 PE=1
           SV=3
          Length = 124

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 145 LLDGLQSALVTAAMEGIALKAMSVAAITAMATG--YARQLSLRANEACGE 2
           +LDG+++ LVT   E + L+ M   A T+      + +QL L+    CGE
Sbjct: 46  ILDGVEATLVTDVAEKMFLRKMKAEAKTSETADQVFLKQLQLKGLPVCGE 95


>sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subunit
           SNF5 OS=Saccharomyces cerevisiae GN=SNF5 PE=1 SV=2
          Length = 905

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 26/91 (28%), Positives = 38/91 (41%)
 Frame = -3

Query: 471 QEMQVGSERKRVQFTQIPQEQPQLGGGQSQERCQ*AQGHS*WAPSERSRLQHCK*KKQPP 292
           Q+ Q   ++++ Q  Q  Q+Q Q    Q Q++ Q  QG     P  +   Q      QPP
Sbjct: 232 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGQ---IPQSQQVPQVRSMSGQPP 288

Query: 291 LCSQPYFSRAPTQPSQNAPLCFQKARACQFD 199
              QP   + P  P  N P    K +  Q+D
Sbjct: 289 TNVQPTIGQLPQLPKLNLP----KYQTIQYD 315


>sp|P22293|SUS_DROME Protein suppressor of sable OS=Drosophila
           melanogaster GN=su(s) PE=1 SV=2
          Length = 1325

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +2

Query: 248 EGCVGAREKYGWEQRGG------CFFYLQ--CCRRDLSLGAHHEWPCAHWHRSWLC 391
           EG  G +EK G   R        C FYL   C +RD     H E+PC +++    C
Sbjct: 313 EGGGGGQEKMGGSNRVEPRKLELCKFYLMDCCAKRDKCSYMHKEFPCKYYYLGMDC 368


>sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Homo
           sapiens GN=PLA2R1 PE=1 SV=2
          Length = 1463

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 459 VGSERKRVQFTQIPQEQPQLGGGQSQERCQ*AQGHS*WAPSERSRLQHCK*KKQPPLCSQ 280
           VG + + VQ+T     QP+  GG     C   +G     P  R  ++HC+  K   LC Q
Sbjct: 594 VGQKPEPVQYTHWNTHQPRYSGG-----CVAMRGRH---PLGRWEVKHCRHFKAMSLCKQ 645

Query: 279 PYFSRAPTQPSQNAP 235
           P  ++   +  +  P
Sbjct: 646 PVENQEKAEYEERWP 660
tr_hit_id A9RKI9
Definition tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 107
Score (bit) 81.6
E-value 3.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946316|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_D07, 5'
         (572 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella paten...    82   3e-14
tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella paten...    79   1e-13
tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea...    72   3e-11
tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subs...    69   1e-10
tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza...    69   1e-10
tr|B6SRD7|B6SRD7_MAIZE Plastoquinol-plastocyanin reductase OS=Ze...    63   1e-08
tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome ...    63   1e-08
tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis...    63   1e-08
tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Popul...    62   2e-08
tr|B6TLU8|B6TLU8_MAIZE Plastoquinol-plastocyanin reductase OS=Ze...    60   7e-08
tr|A7NTN4|A7NTN4_VITVI Chromosome chr18 scaffold_1, whole genome...    58   4e-07
tr|B7FM90|B7FM90_MEDTR Putative uncharacterized protein OS=Medic...    56   2e-06
tr|O48717|O48717_ARATH Expressed protein (Putative uncharacteriz...    51   5e-05
tr|Q9M5M4|Q9M5M4_EUPES Putative uncharacterized protein OS=Eupho...    49   2e-04
tr|Q9SZY6|Q9SZY6_ARATH Cytochrome b6f complex subunit OS=Arabido...    49   3e-04
tr|Q55JK0|Q55JK0_CRYNE Putative uncharacterized protein OS=Crypt...    36   1.3  
tr|A2AUN4|A2AUN4_MOUSE ATP-binding cassette sub-family B (MDR/TA...    34   6.6  
tr|Q7XYX4|Q7XYX4_LOPEL High-molecular-weight glutenin x-type sub...    33   8.6  
tr|Q7XYT9|Q7XYT9_LOPEL High-molecular-weight glutenin x-type sub...    33   8.6  
tr|Q67W94|Q67W94_ORYSJ Putative uncharacterized protein P0460H04...    33   8.6  
tr|A9PK57|A9PK57_POPJC Putative uncharacterized protein OS=Popul...    33   8.6  
tr|A2TJ27|A2TJ27_LOPEL HMW-GS x-type OS=Lophopyrum elongatum GN=...    33   8.6  

>tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_115764 PE=4 SV=1
          Length = 112

 Score = 81.6 bits (200), Expect = 3e-14
 Identities = 50/107 (46%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
 Frame = +3

Query: 99  PSMAAVTRADCKPSRRAVSLG-RKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHXXX 275
           PS+A  T    + S +   LG RK+K+FSG++ ES++ R+G+  STEE FA   +     
Sbjct: 7   PSLAVSTSTSKRSSSK---LGVRKLKNFSGLQPESQVTRMGMPVSTEEAFAN--IRARWS 61

Query: 276 XXXXXXXXXXXXCNVADEIFRLVPIMSGLVLIGIALGFVLLRVGAAL 416
                       C+VA EIFR+VPIMSGL L+GIA+GFVLLRV AA+
Sbjct: 62  GRASRGGALSANCDVASEIFRIVPIMSGLTLVGIAIGFVLLRVEAAV 108


>tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_147622 PE=4 SV=1
          Length = 90

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 43/85 (50%), Positives = 57/85 (67%)
 Frame = +3

Query: 162 RKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHXXXXXXXXXXXXXXXCNVADEIFRL 341
           RK+K+F G+KS+S++ R+G+  STEE FA   +                 C+VA EIFR+
Sbjct: 4   RKLKNFGGLKSDSQVTRMGMPVSTEEAFAS--VKAKCSGRVSRGGALAANCDVASEIFRI 61

Query: 342 VPIMSGLVLIGIALGFVLLRVGAAL 416
           VPIMSGL L+GIA+GFVLLRV AA+
Sbjct: 62  VPIMSGLTLVGIAIGFVLLRVEAAV 86


>tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 129

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
 Frame = +3

Query: 132 KPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVL---AHXXXXXXXXXXXX 302
           KP    V   R +KS++G+K E+++  LG++  +++ FAR V    A             
Sbjct: 27  KPKMNKVCCVRGLKSYAGLKPENKVMNLGVAVHSDKQFARLVTMCRALKANSGGGRGGAL 86

Query: 303 XXXCNVADEIFRLVPIMSGLVLIGIALGFVLLRVGAAL 416
              CNVA EI  +VPIMS LVLIG+A+GFVLLRV AA+
Sbjct: 87  ASTCNVASEIATIVPIMSALVLIGVAVGFVLLRVEAAV 124


>tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0079B15.15 PE=4 SV=1
          Length = 118

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 40/109 (36%), Positives = 62/109 (56%)
 Frame = +3

Query: 90  SAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHX 269
           + +PS+A    A  K  R  V+    M ++SG+K+ +++  LG+ ++ +  FA+ V    
Sbjct: 8   TTLPSLAGAAPAARK--RSGVTYVEGMNAYSGLKALNKVTLLGVRKTADYSFAKVVAKLS 65

Query: 270 XXXXXXXXXXXXXXCNVADEIFRLVPIMSGLVLIGIALGFVLLRVGAAL 416
                         CN A EIFR+  IM+GLVL+G+A+GFVLLRV AA+
Sbjct: 66  PAGGKSRGGAFGAQCNAAGEIFRIAVIMNGLVLVGVAVGFVLLRVEAAV 114


>tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13659 PE=4 SV=1
          Length = 118

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 40/109 (36%), Positives = 62/109 (56%)
 Frame = +3

Query: 90  SAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHX 269
           + +PS+A    A  K  R  V+    M ++SG+K+ +++  LG+ ++ +  FA+ V    
Sbjct: 8   TTLPSLAGAAPAARK--RSGVTYVEGMNAYSGLKALNKVTLLGVRKTADYSFAKVVAKLS 65

Query: 270 XXXXXXXXXXXXXXCNVADEIFRLVPIMSGLVLIGIALGFVLLRVGAAL 416
                         CN A EIFR+  IM+GLVL+G+A+GFVLLRV AA+
Sbjct: 66  PAGGKSRGGAFGAQCNAAGEIFRIAVIMNGLVLVGVAVGFVLLRVEAAV 114


>tr|B6SRD7|B6SRD7_MAIZE Plastoquinol-plastocyanin reductase OS=Zea
           mays PE=4 SV=1
          Length = 117

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 37/110 (33%), Positives = 60/110 (54%)
 Frame = +3

Query: 87  LSAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAH 266
           ++ +PS+AA      K     V+    M ++SG+K  +++  LG+ ++ +  FA+ V + 
Sbjct: 7   VATVPSLAAPA---AKKRSGGVTYVEGMNAYSGLKGLNKVNMLGVRKTADYSFAKVVASL 63

Query: 267 XXXXXXXXXXXXXXXCNVADEIFRLVPIMSGLVLIGIALGFVLLRVGAAL 416
                           N A EIFR+   M+GLVL+G+A+GFVLLRV AA+
Sbjct: 64  SPAGRKRRGGAFGAQMNAAAEIFRIAATMNGLVLVGVAVGFVLLRVEAAV 113


>tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036487001
           PE=4 SV=1
          Length = 201

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
 Frame = +3

Query: 168 MKSFSGMKSESRIGRLGLSESTEEHFARAV--LAHXXXXXXXXXXXXXXXCNVADEIFRL 341
           + SF G+K+ + +  LGL   TE+ FA+ V  L                 CN   EIFR+
Sbjct: 113 LNSFDGLKAYNSVASLGLPVCTEQSFAKIVGSLKSPSQGKGRGGGALSSTCNAVGEIFRI 172

Query: 342 VPIMSGLVLIGIALGFVLLRVGAAL 416
             IM+GLVL+G+A+GFVLLR+ A++
Sbjct: 173 AAIMNGLVLVGVAVGFVLLRIEASV 197


>tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027615 PE=4 SV=1
          Length = 126

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
 Frame = +3

Query: 168 MKSFSGMKSESRIGRLGLSESTEEHFARAV--LAHXXXXXXXXXXXXXXXCNVADEIFRL 341
           + SF G+K+ + +  LGL   TE+ FA+ V  L                 CN   EIFR+
Sbjct: 38  LNSFDGLKAYNSVASLGLPVCTEQSFAKIVXSLKSXSQGKGRGGGALSSTCNAVGEIFRI 97

Query: 342 VPIMSGLVLIGIALGFVLLRVGAAL 416
             IM+GLVL+G+A+GFVLLR+ A++
Sbjct: 98  AAIMNGLVLVGVAVGFVLLRIEASV 122


>tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 122

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
 Frame = +3

Query: 99  PSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAV--LAHXX 272
           P++ A   +  K  +  V+    + SF G+K+ + +  LGLS  +E+ FA+ V  L    
Sbjct: 11  PTLVASAVSSPKRKQTNVNYITGLNSFGGLKAHNSVSSLGLSVGSEQSFAKIVSSLKAPS 70

Query: 273 XXXXXXXXXXXXXCNVADEIFRLVPIMSGLVLIGIALGFVLLRVGA 410
                        C+   EIFR+  +M+GLVL+G+A+GFVLLR+ A
Sbjct: 71  KGKGGSGGALSSTCSNVGEIFRIAAVMNGLVLVGVAVGFVLLRIEA 116


>tr|B6TLU8|B6TLU8_MAIZE Plastoquinol-plastocyanin reductase OS=Zea
           mays PE=4 SV=1
          Length = 117

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 38/108 (35%), Positives = 60/108 (55%)
 Frame = +3

Query: 87  LSAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAH 266
           ++  PS+AA   A  +P+   V+    M ++SG+K  +++  LG+ ++ +  FA+ V + 
Sbjct: 6   VATAPSLAAPA-AKRRPAA-GVTYVEGMNAYSGLKGLNKVTMLGVRKTADYSFAKVVASL 63

Query: 267 XXXXXXXXXXXXXXXCNVADEIFRLVPIMSGLVLIGIALGFVLLRVGA 410
                           N A EIFR+   MSGLVL+G+A+GFVLLRV A
Sbjct: 64  SPAGRKRRGGAFGAQMNAAAEIFRIAATMSGLVLVGVAVGFVLLRVEA 111