DK946331
Clone id YMU02A01NGRL0012_E04
Library
Length 487
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_E04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
ACCACAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGATAAGATGTCGTGC
TGCAATGGTAACTGCGGGTGCGGCGCAAACTGTCAATGCGCCAGCGGCTGCAAGGGGTGC
GGCCGAACTGACAGCCTTGTGCTGTCGAAGGAGGCGCCTCTCGTTCTCAGTGCCACTGCC
TCCGTCTGCCCCAGCTATGAAAGGGCTCTAGGTTTCGGAGTGGAGAACATCTCTGGGTAT
CTTGGCTCTCCTACTTCTTGTTTCCCTCTCAACTGAGCTTAAGGTAGCCTAGTACAAGGG
GTTGCCTTAATAACACCAAAAATAATGTATTTGTATTTAGTTAATAGTCAGTCGTGCAAT
TAACATCCATGGATCGCTTGTACATAGTATGCTCACCTTTGTAATCTTGGAATTTGGTAA
TGATAATGATAATGGCCTAAGCCAAGCCATAAAATGCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 75
Score (bit) 34.3
E-value 0.26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946331|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_E04, 5'
(457 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg... 34 0.26
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu... 33 0.76
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien... 32 1.3
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil... 32 1.3
sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain AT... 30 6.4
sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacteri... 29 8.4
sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol t... 29 8.6

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
norvegicus GN=Gata4 PE=1 SV=1
Length = 440

Score = 34.3 bits (77), Expect = 0.26
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -3

Query: 278 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 99
A L G+++ G P + +S+P P ++ +G + A A FDS L P P
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANP-- 198

Query: 98 H*QFAPHPQLPLQHD 54
A HP L + D
Sbjct: 199 ----ARHPNLDMFDD 209


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
GN=Gata4 PE=1 SV=3
Length = 440

Score = 32.7 bits (73), Expect = 0.76
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -3

Query: 278 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 99
A L G+++ G P + +S+P P ++ +G + A A FDS L P P
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 98 H 96
H
Sbjct: 201 H 201


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
GN=GATA4 PE=1 SV=2
Length = 442

Score = 32.0 bits (71), Expect = 1.3
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = -3

Query: 278 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 99
A L G+++ G + +S+P P ++ +G + A A FDS L P P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 98 H*QFAPHPQLPLQHD 54
HP L + D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
familiaris GN=GATA4 PE=2 SV=1
Length = 442

Score = 32.0 bits (71), Expect = 1.3
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = -3

Query: 278 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 99
A L G+++ G + +S+P P ++ +G + A A FDS L P P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 98 H*QFAPHPQLPLQHD 54
HP L + D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / NRRL 181) GN=myoA PE=3 SV=1
Length = 1250

Score = 29.6 bits (65), Expect = 6.4
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3

Query: 251 GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHP-LQPLAH*QFAPHP 75
GEP TP+P+ +S T+ LR G ++L+ RP P QPL + P P
Sbjct: 975 GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 74 QLP 66
P
Sbjct: 1033 AAP 1035


>sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacterium
populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
GN=glmM PE=3 SV=1
Length = 446

Score = 29.3 bits (64), Expect = 8.4
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3

Query: 171 CHCLR-LPQL*KGSRFRSGEHL 233
CHC LPQ+ K RFRSGE L
Sbjct: 364 CHCFEPLPQILKNVRFRSGEPL 385


>sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol
transfer protein 2 OS=Homo sapiens GN=PITPNM2 PE=1 SV=1
Length = 1349

Score = 29.3 bits (64), Expect = 8.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1

Query: 214 NLEPFHSWGRRRQWH*EREAPPSTAQGCQFGRTPCSRWRIDSLRR 80
N EP G ++QW ++ S+ +G R S WR+ S+ R
Sbjct: 291 NGEPLVGRGLKKQWSTSSKSSRSSKRGASPSRHSISEWRMQSIAR 335


tr_hit_id B8A9Y1
Definition tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 23
Score (bit) 39.3
E-value 0.099
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946331|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_E04, 5'
(457 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.099
tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas reinha... 35 1.4
tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus muscul... 33 9.3

>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05418 PE=4 SV=1
Length = 502

Score = 39.3 bits (90), Expect = 0.099
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = -3

Query: 119 HPLQPLAH*QFAPHPQLPLQHDI 51
HP QPL H Q PHPQLP QHD+
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHDM 242


>tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_194715 PE=4 SV=1
Length = 547

Score = 35.4 bits (80), Expect = 1.4
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Frame = +3

Query: 72 LRVRRKLSMRQRLQGVRPN--------*QPCAVEGGASRSQCHCLRLPQL*KGSRFRSGE 227
L +RR L ++ RLQG +PN QP + AS H L P R RSG+
Sbjct: 44 LELRRALELQCRLQGPQPNATGPVLQPRQPLPLPPAASPQLLHDLGTPPTQSSGRLRSGQ 103

Query: 228 HLWVSW 245
W W
Sbjct: 104 LTWRYW 109


>tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus musculus
GN=Gata4 PE=2 SV=1
Length = 442

Score = 32.7 bits (73), Expect = 9.3
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -3

Query: 278 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 99
A L G+++ G P + +S+P P ++ +G + A A FDS L P P
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 98 H 96
H
Sbjct: 201 H 201