DK946337 |
Clone id |
YMU02A01NGRL0012_E12 |
Library |
YMU02 |
Length |
570 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_E12. 5' end sequence. |
Accession |
DK946337 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL6Contig1 |
Sequence |
CAGCCGAACGAGCAGGTGACGGTAGGAGCAAGGAGGATCAAGAAGAATAAAGAGAAGAAG AAGCCATGGCTGCCGTCTCTGCTTCTACTCTCTCCGCCTCGGTGGCGGCCACTGCCCCCG CTGCTTCTCTGAAGTCGGAATTCTCTGGCGTTCAGGTGCAGGGCATCCCCTCCCTCTCTC CTAATCTATCCGCCCGCTCCCTCAGAATCGAGGCAAGTGGTGTCAAGAAGATCTCGACCA AAACTCCCTTGGGACCTTCCGGCGATACCAAATTCAAGGGTAACCTGGATGCCTCTGGTC GCATAGCTTAGGGAAAGGGAGTCTACCAATATACCAAGAAGTATGGTGCTAATGTCGATG GATACCGCCCTATCTATGTCCCAGAGGAATGGTCAACTTCTGGTGATAGCTATGCTGCAC GTCCTACTGGATTGGCTATCTGGGCAGTTACCCTCGGCGCTATCTTGTTGGGTGGTGCCC TCTTAGTGTACAACACCGGTGCCCTTGCTCAATGATTGCTTTTGTATGTTAATGAGGTGA ATCCTGATTTCTGACGCACTATGCGTCTTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40163 |
Definition |
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum |
Align length |
121 |
Score (bit) |
124.0 |
E-value |
3.0e-28 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946337|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_E12, 5' (570 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 124 3e-28 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 123 7e-28 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 122 2e-27 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 122 2e-27 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 119 1e-26 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 119 1e-26 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 115 1e-25 sp|Q78S06|SYS1_MOUSE Protein SYS1 homolog OS=Mus musculus GN=Sys... 31 3.8 sp|Q1RMQ3|SYS1_BOVIN Protein SYS1 homolog OS=Bos taurus GN=SYS1 ... 31 3.8
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 124 bits (311), Expect = 3e-28 Identities = 65/121 (53%), Positives = 77/121 (63%) Frame = +3
Query: 150 VQVQGIPSLSPNLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRIA*GKGVYQ 329 + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGR GKGVYQ Sbjct: 20 ISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQ 77
Query: 330 YTKKYGANVDGYRPIYVPEEWSTSGDSYAARPTGLAIWAVTXXXXXXXXXXXVYNTGALA 509 Y KYGANVDGY PIY +EWS SGD Y TGLAIWAVT VYNT ALA Sbjct: 78 YVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137
Query: 510 Q 512 Q Sbjct: 138 Q 138
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 123 bits (308), Expect = 7e-28 Identities = 65/119 (54%), Positives = 76/119 (63%) Frame = +3
Query: 156 VQGIPSLSPNLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRIA*GKGVYQYT 335 V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGR GKGVYQY Sbjct: 22 VKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79
Query: 336 KKYGANVDGYRPIYVPEEWSTSGDSYAARPTGLAIWAVTXXXXXXXXXXXVYNTGALAQ 512 KYGANVDGY PIY +EWS SGD Y TGLAIWAVT VYNT ALAQ Sbjct: 80 DKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 122 bits (305), Expect = 2e-27 Identities = 63/119 (52%), Positives = 77/119 (64%) Frame = +3
Query: 156 VQGIPSLSPNLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRIA*GKGVYQYT 335 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + +DASGR GKGVYQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 336 KKYGANVDGYRPIYVPEEWSTSGDSYAARPTGLAIWAVTXXXXXXXXXXXVYNTGALAQ 512 KYGANVDGY PIY ++WS SGD Y TGLAIWAVT V+NT ALAQ Sbjct: 78 DKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 122 bits (305), Expect = 2e-27 Identities = 65/119 (54%), Positives = 75/119 (63%) Frame = +3
Query: 156 VQGIPSLSPNLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRIA*GKGVYQYT 335 V+G+PSLS S+ S + ASGVKKI PLG G K + +D+SGR GKGVYQ+ Sbjct: 24 VKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFV 81
Query: 336 KKYGANVDGYRPIYVPEEWSTSGDSYAARPTGLAIWAVTXXXXXXXXXXXVYNTGALAQ 512 KYGANVDGY PIY EEW+ +GD YA TGL IWAVT VYNT ALAQ Sbjct: 82 DKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 119 bits (298), Expect = 1e-26 Identities = 65/126 (51%), Positives = 74/126 (58%) Frame = +3
Query: 132 KSEFSGVQVQGIPSLSPNLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRIA* 311 +S+ GV+ PS P SL I A KK+ T P GP G FK +DASGR+A Sbjct: 21 RSKLGGVR----PSARP-----SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAK 71
Query: 312 GKGVYQYTKKYGANVDGYRPIYVPEEWSTSGDSYAARPTGLAIWAVTXXXXXXXXXXXVY 491 GKGVYQ+ KYGANVDGY PIY PEEWS SGD Y TGL +WAVT VY Sbjct: 72 GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVY 131
Query: 492 NTGALA 509 +T ALA Sbjct: 132 STSALA 137
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 119 bits (298), Expect = 1e-26 Identities = 64/121 (52%), Positives = 74/121 (61%) Frame = +3
Query: 150 VQVQGIPSLSPNLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRIA*GKGVYQ 329 + +G+PSL+ S S RI ASGVKKI T P G +G + +DASGR G GVY+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 330 YTKKYGANVDGYRPIYVPEEWSTSGDSYAARPTGLAIWAVTXXXXXXXXXXXVYNTGALA 509 + KYGANVDGY PIY +EWS SGD Y TGLAIWAVT VYNT ALA Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
Query: 510 Q 512 Q Sbjct: 141 Q 141
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 115 bits (289), Expect = 1e-25 Identities = 63/118 (53%), Positives = 72/118 (61%) Frame = +3
Query: 159 QGIPSLSPNLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRIA*GKGVYQYTK 338 +G+PSL+ + S +I ASGVKKI T P G +G + +DASGR G GVY+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 339 KYGANVDGYRPIYVPEEWSTSGDSYAARPTGLAIWAVTXXXXXXXXXXXVYNTGALAQ 512 KYGANVDGY PIY EWS SGD Y TGLAIWAVT VYNT ALAQ Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|Q78S06|SYS1_MOUSE Protein SYS1 homolog OS=Mus musculus GN=Sys1 PE=2 SV=1 Length = 156
Score = 31.2 bits (69), Expect = 3.8 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Frame = +1
Query: 340 SMVLMSMDTALSMS---QRNGQLL----VIAMLHVLLDWL-SGQLPSALSCWVVPS*CTT 495 S VL ++ AL + +R Q L + H+L WL S + PSAL+ W+V + C Sbjct: 69 SFVLNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWLYSSRFPSALTWWLVQAVCIA 128
Query: 496 PVPLLNDCFCM 528 + ++ + CM Sbjct: 129 LMAVIGEYLCM 139
>sp|Q1RMQ3|SYS1_BOVIN Protein SYS1 homolog OS=Bos taurus GN=SYS1 PE=2 SV=1 Length = 156
Score = 31.2 bits (69), Expect = 3.8 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Frame = +1
Query: 340 SMVLMSMDTALSMS---QRNGQLL----VIAMLHVLLDWL-SGQLPSALSCWVVPS*CTT 495 S VL ++ AL + +R Q L + H+L WL S + PSAL+ W+V + C Sbjct: 69 SFVLNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWLYSSRFPSALTWWLVQAVCIA 128
Query: 496 PVPLLNDCFCM 528 + ++ + CM Sbjct: 129 LMAVIGEYLCM 139
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S7M9 |
Definition |
tr|A9S7M9|A9S7M9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
126 |
Score (bit) |
137.0 |
E-value |
5.0e-31 |
Report |
|