DK946338 |
Clone id |
YMU02A01NGRL0012_E13 |
Library |
YMU02 |
Length |
596 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_E13. 5' end sequence. |
Accession |
DK946338 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL39Contig1 |
Sequence |
GATTGATCGTGGAGCTGTGTAGAAGCGCGTGTAGAGTGATGGCAACTGCAGCAGCGATGG CGCAAGCTTCTTCGATGGTGGCATCGCCGTCTCTGCACACATCGAAAGTGGCCGCGTGCT ACCGCTTGAACTCTGCATTCCTTGGCAAGGGTCTTGGTCTTGGAGCCGCTTTGCCCAAGC CGGTCGTTACCAGGCCCGTCGCCGTTCGAGCTCAGGAGAGTATCAAGTGATCGAGCCATT GAACGGAGACCCTTTTGTGGGCGGACTTGAGACACCCATCACCAGCAGTCCTCTCATAGC CTGGTACCTCTCCAACCTACCGGCCTACAGGACAGCGGTTAGTCCTCTGCTGCGGGGGAT TGAAGTGGGGCTTGCGCACGGGTTCTTGCTTGTGGGACCCTTTGTTAAGACAGGACCATT GCGCAACACAGATGTGGCAGGTCCTGCAGGGTCACTGGCAGCCGCAGGCCTTGTGGTAAT TTTGTCAGTGTGCCTCACCATCTATGGAGTGGCCACCTTCAAAGAGGGCGCCCCCTCCCT TGCACCTTATCTCACTCTCACTGGCCGCAAGAAAGAAGCTGACAAGCTGCAAACTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q41385 |
Definition |
sp|Q41385|PSAL_SPIOL Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea |
Align length |
125 |
Score (bit) |
187.0 |
E-value |
3.0e-47 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946338|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_E13, 5' (596 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q41385|PSAL_SPIOL Photosystem I reaction center subunit XI, c... 187 3e-47 sp|P23993|PSAL_HORVU Photosystem I reaction center subunit XI, c... 186 1e-46 sp|Q9SUI4|PSAL_ARATH Photosystem I reaction center subunit XI, c... 181 3e-45 sp|Q39654|PSAL_CUCSA Photosystem I reaction center subunit XI, c... 178 2e-44 sp|Q8DGB4|PSAL_THEEB Photosystem I reaction center subunit XI OS... 111 3e-24 sp|P25902|PSAL_SYNEN Photosystem I reaction center subunit XI OS... 108 2e-23 sp|P49486|PSAL_ODOSI Photosystem I reaction center subunit XI OS... 106 8e-23 sp|O78469|PSAL_GUITH Photosystem I reaction center subunit XI OS... 105 2e-22 sp|Q9TM17|PSAL_CYACA Photosystem I reaction center subunit XI OS... 103 5e-22 sp|A0T0U5|PSAL_THAPS Photosystem I reaction center subunit XI OS... 101 3e-21 sp|A0T0M6|PSAL_PHATR Photosystem I reaction center subunit XI OS... 100 6e-21 sp|Q5ENP6|PSAL_ISOGA Photosystem I reaction center subunit XI OS... 99 1e-20 sp|Q85FP8|PSAL_CYAME Photosystem I reaction center subunit XI OS... 99 1e-20 sp|Q4G3B5|PSAL_EMIHU Photosystem I reaction center subunit XI OS... 99 2e-20 sp|P51222|PSAL_PORPU Photosystem I reaction center subunit XI OS... 98 3e-20 sp|Q6B8P4|PSAL_GRATL Photosystem I reaction center subunit XI OS... 98 3e-20 sp|Q1XDR5|PSAL_PORYE Photosystem I reaction center subunit XI OS... 96 1e-19 sp|B0JT88|PSAL_MICAN Photosystem I reaction center subunit XI OS... 96 2e-19 sp|P37277|PSAL_SYNY3 Photosystem I reaction center subunit XI OS... 94 7e-19 sp|O31126|PSAL_MASLA Photosystem I reaction center subunit XI OS... 92 2e-18 sp|P31092|PSAL_ANAVT Photosystem I reaction center subunit XI OS... 90 1e-17 sp|P58577|PSAL_ANASP Photosystem I reaction center subunit XI OS... 90 1e-17 sp|P95822|PSAL_SYNE7 Photosystem I reaction center subunit XI OS... 78 3e-14 sp|O87787|PSAL_PROMA Photosystem I reaction center subunit XI OS... 75 2e-13 sp|Q54753|PSAL_SYNP2 Photosystem I reaction center subunit XI OS... 75 3e-13 sp|P31084|PSAL_SYNP6 Photosystem I reaction center subunit XI OS... 74 7e-13 sp|A2BYP5|PSAL_PROM5 Photosystem I reaction center subunit XI OS... 73 9e-13 sp|Q7UZX6|PSAL_PROMP Photosystem I reaction center subunit XI OS... 73 1e-12 sp|A2BT95|PSAL_PROMS Photosystem I reaction center subunit XI OS... 72 3e-12 sp|A8G719|PSAL_PROM2 Photosystem I reaction center subunit XI OS... 72 3e-12
>sp|Q41385|PSAL_SPIOL Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1 Length = 216
Score = 187 bits (476), Expect = 3e-47 Identities = 89/125 (71%), Positives = 102/125 (81%) Frame = +2
Query: 221 YQVIEPLNGDPFVGGLETPITSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGP 400 YQVI+PLNGDPF+GGLETP+TSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHGFLLVGP Sbjct: 56 YQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGP 115
Query: 401 FVKTGPLRNTDXXXXXXXXXXXXXXXXXXXCLTIYGVATFKEGAPSLAPYLTLTGRKKEA 580 FVK GPLRNT+ CLT+YG+A+FKEG PS+AP LTLTGRKK+ Sbjct: 116 FVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQP 175
Query: 581 DKLQT 595 D+LQ+ Sbjct: 176 DQLQS 180
>sp|P23993|PSAL_HORVU Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1 Length = 209
Score = 186 bits (471), Expect = 1e-46 Identities = 90/131 (68%), Positives = 100/131 (76%) Frame = +2
Query: 203 RSSSGEYQVIEPLNGDPFVGGLETPITSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHG 382 +S YQV++P+NGDPF+G LETP+TSSPL+AWYLSNLPAYRTAVSPLLRGIEVGLAHG Sbjct: 43 KSDKPTYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHG 102
Query: 383 FLLVGPFVKTGPLRNTDXXXXXXXXXXXXXXXXXXXCLTIYGVATFKEGAPSLAPYLTLT 562 +LLVGPF TGPLRNT CLT+YGVA+F EG PS AP LTLT Sbjct: 103 YLLVGPFALTGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLT 162
Query: 563 GRKKEADKLQT 595 GRKKEADKLQT Sbjct: 163 GRKKEADKLQT 173
>sp|Q9SUI4|PSAL_ARATH Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2 Length = 219
Score = 181 bits (458), Expect = 3e-45 Identities = 85/131 (64%), Positives = 100/131 (76%) Frame = +2
Query: 203 RSSSGEYQVIEPLNGDPFVGGLETPITSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHG 382 +S +QV++P+NGDPF+G LETP+TSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHG Sbjct: 53 KSDKTTFQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHG 112
Query: 383 FLLVGPFVKTGPLRNTDXXXXXXXXXXXXXXXXXXXCLTIYGVATFKEGAPSLAPYLTLT 562 F LVGPFVK GPLRNT CLTIYG+++FKEG PS+AP LTLT Sbjct: 113 FFLVGPFVKAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLT 172
Query: 563 GRKKEADKLQT 595 GRKK+ D+LQT Sbjct: 173 GRKKQPDQLQT 183
>sp|Q39654|PSAL_CUCSA Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1 Length = 217
Score = 178 bits (452), Expect = 2e-44 Identities = 88/125 (70%), Positives = 95/125 (76%) Frame = +2
Query: 221 YQVIEPLNGDPFVGGLETPITSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGP 400 +QVI+P+NGDPF+G LETP+TSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGF LVGP Sbjct: 57 FQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGP 116
Query: 401 FVKTGPLRNTDXXXXXXXXXXXXXXXXXXXCLTIYGVATFKEGAPSLAPYLTLTGRKKEA 580 FVK GPLRNT CLT+YGVA+F EG PS AP LTLTGRKK Sbjct: 117 FVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTP 176
Query: 581 DKLQT 595 D LQT Sbjct: 177 DPLQT 181
>sp|Q8DGB4|PSAL_THEEB Photosystem I reaction center subunit XI OS=Thermosynechococcus elongatus (strain BP-1) GN=psaL PE=1 SV=1 Length = 155
Score = 111 bits (277), Expect = 3e-24 Identities = 51/114 (44%), Positives = 72/114 (63%) Frame = +2
Query: 224 QVIEPLNGDPFVGGLETPITSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPF 403 ++++P NGDPFVG L TPI+ S L+ ++ NLPAYR +SP+LRG+EVG+AHG+ L+GP+ Sbjct: 4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPW 63
Query: 404 VKTGPLRNTDXXXXXXXXXXXXXXXXXXXCLTIYGVATFKEGAPSLAPYLTLTG 565 VK GPLR++D CL YG+ +F++G S P T G Sbjct: 64 VKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEG 117
>sp|P25902|PSAL_SYNEN Photosystem I reaction center subunit XI OS=Synechococcus elongatus naegeli GN=psaL PE=3 SV=2 Length = 149
Score = 108 bits (270), Expect = 2e-23 Identities = 50/114 (43%), Positives = 71/114 (62%) Frame = +2
Query: 224 QVIEPLNGDPFVGGLETPITSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPF 403 ++++P NGDPFVG L TPI+ S L+ ++ NLPAYR +SP+L G+EVG+AHG+ L+GP+ Sbjct: 4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILPGLEVGMAHGYFLIGPW 63
Query: 404 VKTGPLRNTDXXXXXXXXXXXXXXXXXXXCLTIYGVATFKEGAPSLAPYLTLTG 565 VK GPLR++D CL YG+ +F++G S P T G Sbjct: 64 VKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEG 117
>sp|P49486|PSAL_ODOSI Photosystem I reaction center subunit XI OS=Odontella sinensis GN=psaL PE=3 SV=1 Length = 150
Score = 106 bits (265), Expect = 8e-23 Identities = 54/100 (54%), Positives = 64/100 (64%) Frame = +2
Query: 230 IEPLNGDPFVGGLETPITSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 409 I+P N DPFVG L TPITSS + L NLPAYR ++PLLRG+E+GLAHG+ L+GPFVK Sbjct: 5 IKPYNDDPFVGHLATPITSSSITRAILKNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVK 64
Query: 410 TGPLRNTDXXXXXXXXXXXXXXXXXXXCLTIYGVATFKEG 529 GPLRN+D LTIYGVA F +G Sbjct: 65 LGPLRNSDIALFSGFLSTIGLILILTLGLTIYGVAAFGQG 104
>sp|O78469|PSAL_GUITH Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1 Length = 152
Score = 105 bits (261), Expect = 2e-22 Identities = 50/99 (50%), Positives = 61/99 (61%) Frame = +2
Query: 224 QVIEPLNGDPFVGGLETPITSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPF 403 Q ++P N DPFVG L TPIT+S LSNLPAYR +SPLLRG+E+G+ HG+ LVGPF Sbjct: 3 QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPF 62
Query: 404 VKTGPLRNTDXXXXXXXXXXXXXXXXXXXCLTIYGVATF 520 K GPLRN++ CL IYGV +F Sbjct: 63 YKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSF 101
>sp|Q9TM17|PSAL_CYACA Photosystem I reaction center subunit XI OS=Cyanidium caldarium GN=psaL PE=3 SV=1 Length = 152
Score = 103 bits (258), Expect = 5e-22 Identities = 46/97 (47%), Positives = 59/97 (60%) Frame = +2
Query: 230 IEPLNGDPFVGGLETPITSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 409 I+P +PFVG L TP+ SS + WYL NLP YR +SPLLRG+E+G+AHG+ ++GPF K Sbjct: 5 IKPYGSNPFVGNLSTPVNSSKVTIWYLKNLPIYRRGLSPLLRGLEIGMAHGYFIIGPFYK 64
Query: 410 TGPLRNTDXXXXXXXXXXXXXXXXXXXCLTIYGVATF 520 GPLRNTD + IYG+ TF Sbjct: 65 LGPLRNTDLSLLSGLIAAIGLIIISSIAMIIYGIVTF 101
>sp|A0T0U5|PSAL_THAPS Photosystem I reaction center subunit XI OS=Thalassiosira pseudonana GN=psaL PE=3 SV=1 Length = 148
Score = 101 bits (251), Expect = 3e-21 Identities = 51/97 (52%), Positives = 60/97 (61%) Frame = +2
Query: 230 IEPLNGDPFVGGLETPITSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 409 I+P N DPFVG L TPITSS L L NLPAYR ++PLLRG+E+GLAHG+ L+GPF + Sbjct: 5 IKPYNDDPFVGHLATPITSSSLTRALLKNLPAYRFGLTPLLRGLEIGLAHGYFLIGPFAQ 64
Query: 410 TGPLRNTDXXXXXXXXXXXXXXXXXXXCLTIYGVATF 520 GPLRN+D LTIYG A F Sbjct: 65 LGPLRNSDIGLLAGFLSTIGLILILTLGLTIYGAAAF 101
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S7M7 |
Definition |
tr|A9S7M7|A9S7M7_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
131 |
Score (bit) |
187.0 |
E-value |
4.0e-46 |
Report |
|