DK946339 |
Clone id |
YMU02A01NGRL0012_E15 |
Library |
YMU02 |
Length |
349 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_E15. 5' end sequence. |
Accession |
DK946339 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL2Contig2 |
Sequence |
ATGGGCGGTACTGGGTGATGTGGAAGCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTG TGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGG GCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTCT AAACTTTCTTAAAGCAAGCCAATTTAGTTGGCATGAATGCCTGCTTCCCATTTCCCACTG GCGCCTAACAAGCTTGCTCTTATGAGCTTTTGTGTCCCAGCCACTTTGCATACATAATGA AACAACTTCCCAGTGGTGGCTTCACTGCTTAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O22573 |
Definition |
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis |
Align length |
57 |
Score (bit) |
93.6 |
E-value |
3.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946339|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_E15, 5' (330 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 94 3e-19 sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 94 3e-19 sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha... 92 6e-19 sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 92 1e-18 sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 91 1e-18 sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 91 1e-18 sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 91 1e-18 sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha... 91 2e-18 sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 91 2e-18 sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai... 90 3e-18 sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai... 90 4e-18 sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 90 4e-18 sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai... 89 5e-18 sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 89 7e-18 sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 89 7e-18 sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 89 7e-18 sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 89 7e-18 sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small cha... 89 9e-18 sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small cha... 89 9e-18 sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 89 9e-18 sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha... 89 9e-18 sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 89 9e-18 sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 89 9e-18 sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 88 1e-17 sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 88 2e-17 sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha... 88 2e-17 sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha... 88 2e-17 sp|P31333|RBS_GOSHI Ribulose bisphosphate carboxylase small chai... 87 2e-17 sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha... 87 2e-17 sp|Q39748|RBS6_FLAPR Ribulose bisphosphate carboxylase small cha... 87 3e-17
>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1 Length = 179
Score = 93.6 bits (231), Expect = 3e-19 Identities = 41/57 (71%), Positives = 46/57 (80%) Frame = +3
Query: 3 GRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 173 GRYW MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP Sbjct: 122 GRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1 Length = 179
Score = 93.6 bits (231), Expect = 3e-19 Identities = 41/57 (71%), Positives = 46/57 (80%) Frame = +3
Query: 3 GRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 173 GRYW MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP Sbjct: 122 GRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1 Length = 179
Score = 92.4 bits (228), Expect = 6e-19 Identities = 40/57 (70%), Positives = 46/57 (80%) Frame = +3
Query: 3 GRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 173 GRYW MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V++P Sbjct: 122 GRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178
>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1 Length = 181
Score = 91.7 bits (226), Expect = 1e-18 Identities = 39/57 (68%), Positives = 45/57 (78%) Frame = +3
Query: 3 GRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 173 GRYW MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GFD RQVQ F+V KP Sbjct: 121 GRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177
>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1 Length = 171
Score = 91.3 bits (225), Expect = 1e-18 Identities = 39/57 (68%), Positives = 46/57 (80%) Frame = +3
Query: 3 GRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 173 GRYWVMWKLPMFGC +A+ V+ E+ ECAK YP+AFIRV+GFD RQVQ F+V KP Sbjct: 114 GRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1 Length = 189
Score = 91.3 bits (225), Expect = 1e-18 Identities = 40/57 (70%), Positives = 45/57 (78%) Frame = +3
Query: 3 GRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 173 GRYWVMWKLPMFGC +A+ VL E+ ECAK YP AFIRV+GFD RQVQ F+V KP Sbjct: 130 GRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1 Length = 182
Score = 91.3 bits (225), Expect = 1e-18 Identities = 37/57 (64%), Positives = 45/57 (78%) Frame = +3
Query: 3 GRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 173 GRYW MWKLPMFGC D++ VL+E+ EC K YP AFIR++GFD KRQVQ+ F+ KP Sbjct: 123 GRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179
>sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1 Length = 179
Score = 90.9 bits (224), Expect = 2e-18 Identities = 40/57 (70%), Positives = 45/57 (78%) Frame = +3
Query: 3 GRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 173 GRYW MWKLPMFGC AA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP Sbjct: 122 GRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1 Length = 180
Score = 90.9 bits (224), Expect = 2e-18 Identities = 38/58 (65%), Positives = 44/58 (75%) Frame = +3
Query: 3 GRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 176 GRYW MWKLPMFGC D A VL E+ EC KEYP AFIR++GFD+ RQVQ F+ KP+ Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178
>sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1 Length = 82
Score = 90.1 bits (222), Expect = 3e-18 Identities = 37/57 (64%), Positives = 44/57 (77%) Frame = +3
Query: 3 GRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 173 GRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP Sbjct: 20 GRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKP 76
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q43110 |
Definition |
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata |
Align length |
58 |
Score (bit) |
112.0 |
E-value |
1.0e-23 |
Report |
|