NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946358
Clone id YMU02A01NGRL0012_F20
Library
Length 176
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_F20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAAGTCCTGGAAGAAAAGGGGGGCTTACCTACTAAATATCTGACGTGGCAGAAGGGATC
TCCCAGAGACAAGAAGGGATGATATATTGGAACGACAAGCAGGGAGGAGAAAGAATTGGG
CAAAAATGATGAATAGAATAAATTGAAAGAAAAGTAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946358|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_F20, 5'
         (145 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q53N99
Definition tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subsp. japonica
Align length 29
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946358|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_F20, 5'
         (145 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subs...    35   1.9  
tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.9  
tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.9  

>tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0245200 PE=4 SV=1
          Length = 897

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 140 YSIHHFCPILSPPCLSFQYIIPSCLWEIP 54
           YS    CP L P CLS QY+ P+C   +P
Sbjct: 352 YSTQSICPGLPPTCLSDQYLSPNCTCAVP 380


>tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35675 PE=4 SV=1
          Length = 954

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 140 YSIHHFCPILSPPCLSFQYIIPSCLWEIP 54
           YS    CP L P CLS QY+ P+C   +P
Sbjct: 427 YSTQSICPGLPPTCLSDQYLSPNCTCAVP 455


>tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032178 PE=4 SV=1
          Length = 893

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 140 YSIHHFCPILSPPCLSFQYIIPSCLWEIP 54
           YS    CP L P CLS QY+ P+C   +P
Sbjct: 352 YSTQSICPGLPPTCLSDQYLSPNCTCAVP 380