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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946391
Clone id YMU02A01NGRL0012_H13
Library
Length 369
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_H13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATAAGAGGAGGTGGTCGCCTCTTTCTCTCTCCATCTAAGTCTGCCTCTTTGTCTCCATT
TGAATGCGTGAGAGCATCTTGAGTGTCACTGTTGATGGCTTGCAACCGGGACAATTGTTG
TTCGTGTGCTGGCAAAGCGGAAGAATTGTGCATCAGCAATGGTGATTCTCTCGGAGCTGA
GAGCATGGACTTCGAAGGGGGTGAGCTCCATTGAAGGTTTTCTTTTATTTGATGCTTTGT
AAACCTATTCTGGCGAAGTATTCGAGCATCTCTGTGTCGAAATTGCGGATCTGATGTGCT
TCATTCCTAGCAAGAAACGATATAATATCTGTATCGTTGATGTAATTCTTGGTGCTATGA
TGTTGGTTC
■■Homology search results ■■ -
sp_hit_id Q8CIN9
Definition sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus norvegicus
Align length 65
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946391|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_H13, 5'
         (369 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Ratt...    32   1.3  
sp|Q37871|NINE_BP82 Protein ninE OS=Enterobacteria phage 82 GN=n...    31   1.7  
sp|P58069|RASA2_MOUSE Ras GTPase-activating protein 2 OS=Mus mus...    31   2.2  
sp|Q63713|RASA2_RAT Ras GTPase-activating protein 2 OS=Rattus no...    30   2.9  
sp|Q47270|NINE_ECOLI Protein ninE homolog from lambdoid prophage...    30   2.9  
sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=A...    30   3.7  
sp|Q6AJY9|PNP_DESPS Polyribonucleotide nucleotidyltransferase OS...    30   3.7  
sp|A4R6X5|RT106_MAGGR Histone chaperone RTT106 OS=Magnaporthe gr...    30   4.9  
sp|O94150|RT09_CANAL 40S ribosomal protein S9, mitochondrial OS=...    29   6.4  
sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus ...    29   6.4  
sp|O15117|FYB_HUMAN FYN-binding protein OS=Homo sapiens GN=FYB P...    29   6.4  
sp|Q91081|ADRA2_LABOS Alpha-2 adrenergic receptor OS=Labrus ossi...    29   6.4  
sp|P40556|YIA6_YEAST Uncharacterized mitochondrial carrier YIL00...    29   8.3  
sp|A4QST9|IRS4_MAGGR Increased rDNA silencing protein 4 OS=Magna...    29   8.3  
sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Sac...    29   8.3  
sp|Q7ZXT3|EDC4_XENLA Enhancer of mRNA-decapping protein 4 OS=Xen...    29   8.3  

>sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus
           norvegicus GN=Rffl PE=1 SV=1
          Length = 362

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -1

Query: 201 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDGERK 22
           P  ++ L+ P+ S +    S  LP+   Q++ + A + +TQ A+ H + D E  +  E  
Sbjct: 156 PEQQAFLTQPQSSTV-PPTSPGLPSSPAQVTSVLAQDQETQQAIGHVSQDHEEPIFLEST 214

Query: 21  RRPPP 7
            R PP
Sbjct: 215 ARVPP 219


>sp|Q37871|NINE_BP82 Protein ninE OS=Enterobacteria phage 82 GN=ninE
           PE=3 SV=1
          Length = 56

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 244 VYKASNKRKPSMELTPFEVHALSSERITIADAQFFRFASTR 122
           +YK  N+RK   EL P E+  L     ++ D ++ R A+ R
Sbjct: 13  IYKVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARR 53


>sp|P58069|RASA2_MOUSE Ras GTPase-activating protein 2 OS=Mus
           musculus GN=Rasa2 PE=1 SV=1
          Length = 848

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 134 CQHTNNNCPGCKPSTVTLKMLSRIQMETKRQT 39
           CQ T+ + PGCKP T  +    +I ++  R+T
Sbjct: 727 CQETSESTPGCKPCTAGIPADIQIDIDEDRET 758


>sp|Q63713|RASA2_RAT Ras GTPase-activating protein 2 OS=Rattus
           norvegicus GN=Rasa2 PE=2 SV=1
          Length = 847

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 134 CQHTNNNCPGCKPSTVTLKMLSRIQMETKRQT 39
           CQ T+   PGCKP T  +    +I ++  R+T
Sbjct: 726 CQETSEGTPGCKPCTAGIPADIQIDIDEDRET 757


>sp|Q47270|NINE_ECOLI Protein ninE homolog from lambdoid prophage
           DLP12 OS=Escherichia coli (strain K12) GN=ninE PE=3 SV=1
          Length = 56

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 244 VYKASNKRKPSMELTPFEVHALSSERITIADAQFFRFASTRT 119
           +Y+  N+RK   EL P E+  L     ++ D ++ R A+ R+
Sbjct: 13  IYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRS 54


>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680
           OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
          Length = 390

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -2

Query: 179 QLRE---NHHC*CTILPLCQHTNNNCPGCK 99
           +LRE   NHH  CT +    H N+ CP CK
Sbjct: 350 ELRELPCNHHFHCTCIDKWLHINSRCPLCK 379


>sp|Q6AJY9|PNP_DESPS Polyribonucleotide nucleotidyltransferase
           OS=Desulfotalea psychrophila GN=pnp PE=3 SV=1
          Length = 692

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +2

Query: 11  GGRLFLSPSKSASLSPFECVRAS*VSLLMACNRDNCCSCAGKAEELCISNGDSLGAESMD 190
           GGR+     K      F  + +S + L++AC R+      GKA+EL  S  + LGA    
Sbjct: 150 GGRIAYIDGKYVLNPTFAELESSSMDLMVACTRNAIVMVEGKADEL--SEDEILGAIFFA 207

Query: 191 FE 196
           FE
Sbjct: 208 FE 209


>sp|A4R6X5|RT106_MAGGR Histone chaperone RTT106 OS=Magnaporthe
           grisea GN=RTT106 PE=3 SV=1
          Length = 468

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 264 EHLCVEIADLMCFIPSKKRYNICI 335
           E L +EI D+   IP +K+YN+C+
Sbjct: 92  EELQLEIKDISVSIPQRKKYNLCL 115


>sp|O94150|RT09_CANAL 40S ribosomal protein S9, mitochondrial
           OS=Candida albicans GN=MRPS9 PE=2 SV=1
          Length = 336

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = -1

Query: 297 TSDPQFRHRDARILRQNR-----FTKHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSAL 133
           T+ P+F+ R  R  + ++     +T  Q+ ENL          ++  R  P LM      
Sbjct: 51  TTKPRFQSRFRRNQQPHQQQRSPYTSSQVTENLNIGE------INRVRTVPTLMTYYGGN 104

Query: 132 PAHEQQLSRLQAINSDTQDALTHSNGDKE 46
           P HE  ++RL+A+    Q        D+E
Sbjct: 105 PVHEDNMNRLRAVLKKYQQLPVRVVPDRE 133


>sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus
           musculus GN=Rnf123 PE=2 SV=1
          Length = 1314

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -1

Query: 204 SPPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLD 34
           SPP +   +A    PL  HN   LP H  QL ++ + ++++Q  +    G     LD
Sbjct: 44  SPPDRGPAAATSRKPLNFHN---LPEHVDQLLQVDSEDNESQGQVEGRLGPSTVVLD 97
tr_hit_id Q4E5A5
Definition tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein OS=Trypanosoma cruzi
Align length 66
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946391|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_H13, 5'
         (369 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein OS=Trypa...    37   0.64 
tr|Q381C0|Q381C0_9TRYP Putative uncharacterized protein OS=Trypa...    35   1.4  
tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory trans...    35   2.4  
tr|Q8LIH0|Q8LIH0_ORYSJ Centromere protein-like (Putative unchara...    34   3.2  
tr|Q0D3H6|Q0D3H6_ORYSJ Os07g0686400 protein OS=Oryza sativa subs...    34   3.2  
tr|B8M6I9|B8M6I9_9EURO Putative uncharacterized protein OS=Talar...    34   3.2  
tr|A4HBI2|A4HBI2_LEIBR Putative uncharacterized protein OS=Leish...    34   4.1  
tr|Q10DW0|Q10DW0_ORYSJ Os03g0717900 protein OS=Oryza sativa subs...    33   5.4  
tr|A3AM41|A3AM41_ORYSJ Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|A2XLF0|A2XLF0_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|Q803L4|Q803L4_DANRE Zgc:55573 OS=Danio rerio GN=zgc:55573 PE=...    33   7.1  
tr|A9RSV2|A9RSV2_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.1  
tr|B6KMK8|B6KMK8_TOXGO Putative uncharacterized protein OS=Toxop...    33   7.1  
tr|A2DSH1|A2DSH1_TRIVA Putative uncharacterized protein OS=Trich...    33   7.1  
tr|Q6H593|Q6H593_ORYSJ Os09g0386200 protein OS=Oryza sativa subs...    33   7.1  
tr|B8BF24|B8BF24_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|Q570Z6|Q570Z6_MOUSE MKIAA4127 protein (Fragment) OS=Mus muscu...    33   9.2  
tr|B2KF50|B2KF50_MOUSE UHRF1 (ICBP90) binding protein 1 OS=Mus m...    33   9.2  
tr|B0KS50|B0KS50_PSEPG Amino acid adenylation domain protein OS=...    33   9.2  
tr|A4F9B5|A4F9B5_SACEN Alpha-L-fucosidase OS=Saccharopolyspora e...    33   9.2  
tr|B6Q3E0|B6Q3E0_PENMA Putative uncharacterized protein OS=Penic...    33   9.2  
tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor (st...    33   9.2  
tr|B7JVS3|B7JVS3_SYNP8 Putative signal transduction protein with...    33   9.3  
tr|B4BVW0|B4BVW0_9CHRO Putative signal transduction protein with...    33   9.3  
tr|A9HKD8|A9HKD8_9RHOB Dehydrogenase, putative OS=Roseobacter li...    33   9.3  

>tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053506559.250 PE=4 SV=1
          Length = 1559

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 201  PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINS-DTQDALTHSNGDKEADLDGER 25
            PPS S+ S PR SP L  +SS+ PA ++    LQAI++ D+ D      GD  +    E 
Sbjct: 1179 PPSSSLASPPRSSPSLFSSSSS-PATDKHRRVLQAISTVDSSDVAALEKGDDSSPQAQEE 1237

Query: 24   KRRPPP 7
                 P
Sbjct: 1238 TAEQEP 1243


>tr|Q381C0|Q381C0_9TRYP Putative uncharacterized protein
            OS=Trypanosoma brucei GN=Tb11.01.8390 PE=4 SV=1
          Length = 2135

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -1

Query: 186  MLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDGE 28
            +LS P  SP L+ N   LPA     SRL  ++    +A + ++GD E + +GE
Sbjct: 1038 ILSNPASSPQLLLNMCKLPAPAYMGSRLPLLSMPVHNARSDTSGDVEGETNGE 1090


>tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory
           transducer OS=Rhodopseudomonas palustris (strain BisA53)
           GN=RPE_1941 PE=3 SV=1
          Length = 568

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -1

Query: 201 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRL 103
           PP + ++ A  E+ L +HN S LPAH Q+L++L
Sbjct: 63  PPPEYVIEAFLEATLALHNPSNLPAHRQRLAKL 95


>tr|Q8LIH0|Q8LIH0_ORYSJ Centromere protein-like (Putative
           uncharacterized protein) OS=Oryza sativa subsp. japonica
           GN=OJ1200_C08.114 PE=4 SV=1
          Length = 860

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = -1

Query: 231 QIKENLQWSSPPSKSML-----SAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALT 67
           Q++ ++ +SSP   S L     S   + P  + N S  P H  + +RL  + +  +    
Sbjct: 73  QLRRSMSFSSPAGNSFLKDRSFSFSGDVPSSLFNESDAPDHVAKSTRLTNLLNKNEVLDR 132

Query: 66  HSNGDKEADLDGERKRRPPP 7
           + +G++EA + GER+++  P
Sbjct: 133 YIDGEQEATILGERQKQNSP 152


>tr|Q0D3H6|Q0D3H6_ORYSJ Os07g0686400 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0686400 PE=4 SV=1
          Length = 926

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = -1

Query: 231 QIKENLQWSSPPSKSML-----SAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALT 67
           Q++ ++ +SSP   S L     S   + P  + N S  P H  + +RL  + +  +    
Sbjct: 139 QLRRSMSFSSPAGNSFLKDRSFSFSGDVPSSLFNESDAPDHVAKSTRLTNLLNKNEVLDR 198

Query: 66  HSNGDKEADLDGERKRRPPP 7
           + +G++EA + GER+++  P
Sbjct: 199 YIDGEQEATILGERQKQNSP 218


>tr|B8M6I9|B8M6I9_9EURO Putative uncharacterized protein
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_027460 PE=4
           SV=1
          Length = 266

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = -1

Query: 237 KHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSN 58
           K +++E+L   SPP+ S L++P  + ++ H      AHE  LSR     +  +D     N
Sbjct: 27  KEKMEESLD--SPPTGSPLTSPIVTIVVGHERRLFAAHEDVLSRSAFFEAALKDQFLEPN 84

Query: 57  GDKEADLDGE 28
           G K+ DL  E
Sbjct: 85  G-KKVDLPDE 93


>tr|A4HBI2|A4HBI2_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM20_V2.4220 PE=4 SV=1
          Length = 1189

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = -1

Query: 183 LSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDGERKRRP 13
           L  P   PL+   SSA P  E  ++   A+++++  A T + G+ ++   GE+KRRP
Sbjct: 428 LHHPTLPPLVKAESSAAPTAESPVANRGALSAESA-AATANTGESDSSPAGEKKRRP 483


>tr|Q10DW0|Q10DW0_ORYSJ Os03g0717900 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0717900 PE=2 SV=1
          Length = 455

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
 Frame = -1

Query: 201 PPSKSMLSAPRESPLLMHNSSALPAH--------EQQLSRLQAINSDTQDALTHSNGDKE 46
           PPS S+     ESP+    S  L  H        EQQL +LQ      +DA   + GDK 
Sbjct: 118 PPSSSIAPLQMESPVGQFLSQILATHPHLLPAAAEQQLEQLQT----DRDAAKDNGGDKP 173

Query: 45  ADLDGE 28
           A  DG+
Sbjct: 174 APSDGD 179


>tr|A3AM41|A3AM41_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011863 PE=4 SV=1
          Length = 413

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
 Frame = -1

Query: 201 PPSKSMLSAPRESPLLMHNSSALPAH--------EQQLSRLQAINSDTQDALTHSNGDKE 46
           PPS S+     ESP+    S  L  H        EQQL +LQ      +DA   + GDK 
Sbjct: 76  PPSSSIAPLQMESPVGQFLSQILATHPHLLPAAAEQQLEQLQT----DRDAAKDNGGDKP 131

Query: 45  ADLDGE 28
           A  DG+
Sbjct: 132 APSDGD 137


>tr|A2XLF0|A2XLF0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13299 PE=4 SV=1
          Length = 413

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
 Frame = -1

Query: 201 PPSKSMLSAPRESPLLMHNSSALPAH--------EQQLSRLQAINSDTQDALTHSNGDKE 46
           PPS S+     ESP+    S  L  H        EQQL +LQ      +DA   + GDK 
Sbjct: 76  PPSSSIAPLQMESPVGQFLSQILATHPHLLPAAAEQQLEQLQT----DRDAAKDNGGDKP 131

Query: 45  ADLDGE 28
           A  DG+
Sbjct: 132 APSDGD 137