DK946394 |
Clone id |
YMU02A01NGRL0012_H17 |
Library |
YMU02 |
Length |
401 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_H17. 5' end sequence. |
Accession |
DK946394 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1390Contig1 |
Sequence |
ATCTGAAGCCAGTTCAAGGCCTGCTCAAGTCTTTGCAGGATGCAGCGTCAAGTGTTGCCC GCTCTTTGTCAGGACAACCTCCATTGAAGTTTCCTATCCAAACAGATAGGGCCCAGTCTT GGCTCCTCACAACCTACCTGGATAGTGATTTGCGCATTTCCCGCGGAGACAGCTGTAGTA TTTTTGTACTCCTGAAAGACGGCAGTGAACTCTTGGAAGACTTATGAATGAGTGATTGAG TCTTCCTGGTGAGGAGTTTCTGAGAGTTCTAGATTTGCGACGGGGTCTCCTCATGGAATT GTATACAAGTAACATTCTTTTGTGGTATATGAGTGTATAATTGGCCTGAAGGCATGTTTG CTATCCNAAATCCAAATAGAGTTCTGAAGTCATTACCGTGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6K439 |
Definition |
sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica |
Align length |
66 |
Score (bit) |
99.8 |
E-value |
4.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946394|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_H17, 5' (386 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2... 100 4e-21 sp|P80471|LIPC_SOLTU Light-induced protein, chloroplastic OS=Sol... 98 1e-20 sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2... 98 1e-20 sp|Q94FZ9|PAP1_BRACM Plastid lipid-associated protein 1, chlorop... 97 3e-20 sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1... 97 3e-20 sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chlorop... 96 7e-20 sp|O99019|LIPC_SOLDE Light-induced protein, chloroplastic OS=Sol... 95 1e-19 sp|Q96398|CHRC_CUCSA Chromoplast-specific carotenoid-associated ... 93 5e-19 sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplas... 92 6e-19 sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3... 84 2e-16 sp|Q94KU5|PAP3_BRACM Plastid lipid-associated protein 3, chlorop... 83 4e-16 sp|Q7XBW5|PAP3_ORYSJ Probable plastid-lipid-associated protein 3... 82 6e-16 sp|Q9ZP40|PG1_PEA Plastoglobulin-1, chloroplastic OS=Pisum sativ... 74 3e-13 sp|Q8LAP6|PAP12_ARATH Probable plastid-lipid-associated protein ... 37 0.024 sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4... 35 0.12 sp|Q6DBN2|PAP5_ARATH Probable plastid-lipid-associated protein 5... 31 2.2 sp|P47786|RNAS2_SAGOE Non-secretory ribonuclease OS=Saguinus oed... 29 8.4
>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1 Length = 319
Score = 99.8 bits (247), Expect = 4e-21 Identities = 47/66 (71%), Positives = 57/66 (86%) Frame = +3
Query: 3 GLLKSLQDAASSVARSLSGQPPLKFPIQTDRAQSWLLTTYLDSDLRISRGDSCSIFVLLK 182 G+ S+++AASSVAR++SGQPPLK PI+TD A+SWLLTTYLD +LRISRGD SIFVL K Sbjct: 253 GIFSSIENAASSVARTISGQPPLKIPIRTDNAESWLLTTYLDDELRISRGDGSSIFVLFK 312
Query: 183 DGSELL 200 +GS LL Sbjct: 313 EGSTLL 318
>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2 Length = 326
Score = 98.2 bits (243), Expect = 1e-20 Identities = 46/67 (68%), Positives = 58/67 (86%) Frame = +3
Query: 3 GLLKSLQDAASSVARSLSGQPPLKFPIQTDRAQSWLLTTYLDSDLRISRGDSCSIFVLLK 182 GL+ S+QD ASSVA+S+S QPP+KFPI + AQSWLLTTYLD +LRISRGD+ S+FVL+K Sbjct: 259 GLITSVQDTASSVAKSISSQPPIKFPITNNNAQSWLLTTYLDDELRISRGDAGSVFVLIK 318
Query: 183 DGSELLE 203 +GS LL+ Sbjct: 319 EGSPLLK 325
>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1 Length = 310
Score = 97.8 bits (242), Expect = 1e-20 Identities = 47/66 (71%), Positives = 55/66 (83%) Frame = +3
Query: 3 GLLKSLQDAASSVARSLSGQPPLKFPIQTDRAQSWLLTTYLDSDLRISRGDSCSIFVLLK 182 GLL S+QD ASSVAR++S QPPLKF + D AQSWLLTTYLD D+RISRGD S+FVL+K Sbjct: 243 GLLTSVQDTASSVARTISSQPPLKFSLPADNAQSWLLTTYLDKDIRISRGDGGSVFVLIK 302
Query: 183 DGSELL 200 +GS LL Sbjct: 303 EGSPLL 308
>sp|Q94FZ9|PAP1_BRACM Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1 Length = 327
Score = 96.7 bits (239), Expect = 3e-20 Identities = 47/66 (71%), Positives = 55/66 (83%) Frame = +3
Query: 3 GLLKSLQDAASSVARSLSGQPPLKFPIQTDRAQSWLLTTYLDSDLRISRGDSCSIFVLLK 182 GLL S+QD ASSVAR++S QPPLKF + D AQSWLLTTYLD DLRISRGD S+FVL++ Sbjct: 260 GLLTSVQDTASSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDLRISRGDGGSVFVLIR 319
Query: 183 DGSELL 200 +GS LL Sbjct: 320 EGSSLL 325
>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1 Length = 318
Score = 96.7 bits (239), Expect = 3e-20 Identities = 46/66 (69%), Positives = 55/66 (83%) Frame = +3
Query: 3 GLLKSLQDAASSVARSLSGQPPLKFPIQTDRAQSWLLTTYLDSDLRISRGDSCSIFVLLK 182 GLL S+QD ASSVAR++S QPPLKF + +D QSWLLTTYLD DLRISRGD S++VL+K Sbjct: 251 GLLTSVQDTASSVARTISNQPPLKFSLPSDNTQSWLLTTYLDKDLRISRGDGGSVYVLIK 310
Query: 183 DGSELL 200 +GS LL Sbjct: 311 EGSSLL 316
>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1 Length = 319
Score = 95.5 bits (236), Expect = 7e-20 Identities = 46/66 (69%), Positives = 55/66 (83%) Frame = +3
Query: 3 GLLKSLQDAASSVARSLSGQPPLKFPIQTDRAQSWLLTTYLDSDLRISRGDSCSIFVLLK 182 GLL S+QD A+SVAR++S QPPLKF + D AQSWLLTTYLD D+RISRGD S+FVL+K Sbjct: 252 GLLTSVQDTATSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDIRISRGDGGSVFVLIK 311
Query: 183 DGSELL 200 +GS LL Sbjct: 312 EGSPLL 317
>sp|O99019|LIPC_SOLDE Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1 Length = 326
Score = 94.7 bits (234), Expect = 1e-19 Identities = 44/67 (65%), Positives = 56/67 (83%) Frame = +3
Query: 3 GLLKSLQDAASSVARSLSGQPPLKFPIQTDRAQSWLLTTYLDSDLRISRGDSCSIFVLLK 182 GL+ S+QD ASSV +S+S QPP+KFPI + AQSWLLTTYLD +LRI RGD+ S+FVL+K Sbjct: 259 GLITSVQDTASSVVKSISSQPPIKFPITNNNAQSWLLTTYLDDELRIPRGDAGSVFVLIK 318
Query: 183 DGSELLE 203 +GS LL+ Sbjct: 319 EGSPLLK 325
>sp|Q96398|CHRC_CUCSA Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1 Length = 322
Score = 92.8 bits (229), Expect = 5e-19 Identities = 43/66 (65%), Positives = 53/66 (80%) Frame = +3
Query: 3 GLLKSLQDAASSVARSLSGQPPLKFPIQTDRAQSWLLTTYLDSDLRISRGDSCSIFVLLK 182 G++ SLQD AS+VA+++S QPP+KF I R +SWLLTTYLD DLRISRGD S+FVLLK Sbjct: 255 GIISSLQDTASNVAKTISSQPPIKFSISNTRVESWLLTTYLDEDLRISRGDGGSVFVLLK 314
Query: 183 DGSELL 200 +GS L Sbjct: 315 EGSSFL 320
>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1 Length = 323
Score = 92.4 bits (228), Expect = 6e-19 Identities = 44/66 (66%), Positives = 53/66 (80%) Frame = +3
Query: 3 GLLKSLQDAASSVARSLSGQPPLKFPIQTDRAQSWLLTTYLDSDLRISRGDSCSIFVLLK 182 G+L S+QD ASSVA+++S QPPLKF I AQSWLLTTYLD DLRISR D+ S+FV +K Sbjct: 256 GILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIK 315
Query: 183 DGSELL 200 +GS LL Sbjct: 316 EGSPLL 321
>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1 Length = 376
Score = 84.0 bits (206), Expect = 2e-16 Identities = 41/65 (63%), Positives = 50/65 (76%) Frame = +3
Query: 9 LKSLQDAASSVARSLSGQPPLKFPIQTDRAQSWLLTTYLDSDLRISRGDSCSIFVLLKDG 188 L LQD A++++R+LSGQPPLK P +R SWLLTTYLD DLRISRGD +FVL ++G Sbjct: 312 LNPLQDVAANISRALSGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDG-GLFVLAREG 370
Query: 189 SELLE 203 S LLE Sbjct: 371 SSLLE 375
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SIT2 |
Definition |
tr|A9SIT2|A9SIT2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
66 |
Score (bit) |
103.0 |
E-value |
3.0e-21 |
Report |
|