DK946399 |
Clone id |
YMU02A01NGRL0012_H24 |
Library |
YMU02 |
Length |
541 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_H24. 5' end sequence. |
Accession |
DK946399 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL30Contig1 |
Sequence |
GCTTCAGAGCCATGCCCAATATTTTGATGTTGCGACCTGCTGATGGAAATGAGACTGCTG GTGCATACAAGGTGGCTGTGGAGAGTAGAAAACGGCCCTCAATTCTTGCGCTCTCGCGCC AAAAGCTCCCCCATCTACCTGGGACATCTATTGAAGGAGTAGAGAAAGGAGGCTATACCA TCAGTTGCAACGCTTCTGGAAACAAGCCTGACTTGATCCTCTTCGGAACAGGATCTGAAC TAGAGATTGCCTACAAAGCAGCCGAAGTCATCAGGAAGGAGGGCAAAACTGTGAGAGTTG TCTCAATGGTATCATGGGAGTTGTTTGAAGAACAAAGTGCTGAATACAAAGAGAGTGTTA TCCCTGCAGCCGTGACTTCCAGAGTGAGTGTCGAAGCTGGTTCTACATTCGGTTGGGAGA AGTATGTAGGCTCCAAAGGCAAAGCAATAGGCATTGACCACTTTGGTGCCAGTGCACCTG CTGGTACCATCTACAAAAAGTTTGGTTTGACTGTGGACAATGTGGTTGCCAATGCCAAGG A |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q7SIC9 |
Definition |
sp|Q7SIC9|TKTC_MAIZE Transketolase, chloroplastic OS=Zea mays |
Align length |
179 |
Score (bit) |
302.0 |
E-value |
8.0e-82 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946399|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_H24, 5' (541 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q7SIC9|TKTC_MAIZE Transketolase, chloroplastic OS=Zea mays PE... 302 8e-82 sp|Q42676|TKTC_CRAPL Transketolase, chloroplastic (Fragment) OS=... 292 6e-79 sp|O20250|TKTC_SPIOL Transketolase, chloroplastic OS=Spinacia ol... 283 5e-76 sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tub... 280 4e-75 sp|Q42675|TKTA_CRAPL Transketolase 10 OS=Craterostigma plantagin... 262 7e-70 sp|Q42677|TKT7_CRAPL Transketolase 7 OS=Craterostigma plantagine... 259 8e-69 sp|Q8YRU9|TKT_ANASP Transketolase OS=Anabaena sp. (strain PCC 71... 212 8e-55 sp|Q9KAD7|TKT_BACHD Transketolase OS=Bacillus halodurans GN=tkt ... 181 3e-45 sp|P66963|TKT_STAAW Transketolase OS=Staphylococcus aureus (stra... 177 4e-44 sp|Q6G9L6|TKT_STAAS Transketolase OS=Staphylococcus aureus (stra... 177 4e-44 sp|Q6GH64|TKT_STAAR Transketolase OS=Staphylococcus aureus (stra... 177 4e-44 sp|P99161|TKT_STAAN Transketolase OS=Staphylococcus aureus (stra... 177 4e-44 sp|P66962|TKT_STAAM Transketolase OS=Staphylococcus aureus (stra... 177 4e-44 sp|Q5HG77|TKT_STAAC Transketolase OS=Staphylococcus aureus (stra... 177 4e-44 sp|P45694|TKT_BACSU Transketolase OS=Bacillus subtilis GN=tkt PE... 172 7e-43 sp|Q8NZX4|TKT_STRP8 Transketolase OS=Streptococcus pyogenes sero... 172 9e-43 sp|Q5XAK5|TKT_STRP6 Transketolase OS=Streptococcus pyogenes sero... 171 2e-42 sp|Q5HPJ9|TKT_STAEQ Transketolase OS=Staphylococcus epidermidis ... 165 1e-40 sp|P57958|TKT2_PASMU Transketolase 2 OS=Pasteurella multocida GN... 164 2e-40 sp|Q8CPC7|TKT_STAES Transketolase OS=Staphylococcus epidermidis ... 164 3e-40 sp|P57927|TKT1_PASMU Transketolase 1 OS=Pasteurella multocida GN... 162 1e-39 sp|P43757|TKT_HAEIN Transketolase OS=Haemophilus influenzae GN=t... 159 1e-38 sp|Q7MDD4|TKT2_VIBVY Transketolase 2 OS=Vibrio vulnificus (strai... 159 1e-38 sp|Q7MHK7|TKT1_VIBVY Transketolase 1 OS=Vibrio vulnificus (strai... 158 1e-38 sp|Q87GY4|TKT2_VIBPA Transketolase 2 OS=Vibrio parahaemolyticus ... 158 2e-38 sp|Q9KLW7|TKT2_VIBCH Transketolase 2 OS=Vibrio cholerae GN=tkt2 ... 158 2e-38 sp|Q9KUP2|TKT1_VIBCH Transketolase 1 OS=Vibrio cholerae GN=tkt1 ... 158 2e-38 sp|Q8D6H8|TKT2_VIBVU Transketolase 2 OS=Vibrio vulnificus GN=tkt... 157 3e-38 sp|Q8DCA2|TKT1_VIBVU Transketolase 1 OS=Vibrio vulnificus GN=tkt... 157 3e-38 sp|P22976|TKT_STRPN Probable transketolase OS=Streptococcus pneu... 155 9e-38
>sp|Q7SIC9|TKTC_MAIZE Transketolase, chloroplastic OS=Zea mays PE=1 SV=1 Length = 675
Score = 302 bits (773), Expect = 8e-82 Identities = 148/179 (82%), Positives = 169/179 (94%) Frame = +3
Query: 3 FRAMPNILMLRPADGNETAGAYKVAVESRKRPSILALSRQKLPHLPGTSIEGVEKGGYTI 182 FRAMPNILMLRPADGNETAGAYKVAV +RKRPSILALSRQKLPHLPGTSIEGVEKGGYTI Sbjct: 495 FRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLPGTSIEGVEKGGYTI 554
Query: 183 SCNASGNKPDLILFGTGSELEIAYKAAEVIRKEGKTVRVVSMVSWELFEEQSAEYKESVI 362 S N++GNKPDLI+ GTGSELEIA KAA+ +RKEGKTVRVVS VSWELF+EQS EYKESV+ Sbjct: 555 SDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVL 614
Query: 363 PAAVTSRVSVEAGSTFGWEKYVGSKGKAIGIDHFGASAPAGTIYKKFGLTVDNVVANAK 539 PAAVT+R+S+EAGST GW+KYVG++GKAIGID FGASAPAGTIYK++G+TV++++A AK Sbjct: 615 PAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEYGITVESIIAAAK 673
>sp|Q42676|TKTC_CRAPL Transketolase, chloroplastic (Fragment) OS=Craterostigma plantagineum GN=TKT3 PE=1 SV=1 Length = 519
Score = 292 bits (748), Expect = 6e-79 Identities = 147/179 (82%), Positives = 163/179 (91%) Frame = +3
Query: 3 FRAMPNILMLRPADGNETAGAYKVAVESRKRPSILALSRQKLPHLPGTSIEGVEKGGYTI 182 FRAMPNILMLRPADGNETAGAYKVAV++ KRPS+LALSRQKLP LPGTSIEGVEKGGY I Sbjct: 338 FRAMPNILMLRPADGNETAGAYKVAVQNLKRPSVLALSRQKLPQLPGTSIEGVEKGGYVI 397
Query: 183 SCNASGNKPDLILFGTGSELEIAYKAAEVIRKEGKTVRVVSMVSWELFEEQSAEYKESVI 362 S N+SGNKPD+IL GTGSELEIA KA EV+RKEGK VRVVS VSWELF+EQS EYKESV+ Sbjct: 398 SDNSSGNKPDVILIGTGSELEIAAKAGEVLRKEGKGVRVVSFVSWELFDEQSKEYKESVL 457
Query: 363 PAAVTSRVSVEAGSTFGWEKYVGSKGKAIGIDHFGASAPAGTIYKKFGLTVDNVVANAK 539 P++VT+RVS+EAGSTFGW K VGSKGKAIGID FGASAPAG IY++FG+TV+ VVA AK Sbjct: 458 PSSVTARVSIEAGSTFGWGKIVGSKGKAIGIDRFGASAPAGKIYEEFGITVEAVVAAAK 516
>sp|O20250|TKTC_SPIOL Transketolase, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Length = 741
Score = 283 bits (723), Expect = 5e-76 Identities = 142/179 (79%), Positives = 161/179 (89%) Frame = +3
Query: 3 FRAMPNILMLRPADGNETAGAYKVAVESRKRPSILALSRQKLPHLPGTSIEGVEKGGYTI 182 F AMPNILMLRPADGNETAG+YKVAVE+RK PSILALSR+KLP+LPGTSIEGVEKGGYTI Sbjct: 560 FPAMPNILMLRPADGNETAGSYKVAVENRKTPSILALSRKKLPNLPGTSIEGVEKGGYTI 619
Query: 183 SCNASGNKPDLILFGTGSELEIAYKAAEVIRKEGKTVRVVSMVSWELFEEQSAEYKESVI 362 + N+SGNKPD+IL GTGSELEIA KA + +RKEGK VRVVS VSWELFE+QS EYKESV+ Sbjct: 620 TDNSSGNKPDVILIGTGSELEIAAKAGDELRKEGKAVRVVSFVSWELFEKQSDEYKESVL 679
Query: 363 PAAVTSRVSVEAGSTFGWEKYVGSKGKAIGIDHFGASAPAGTIYKKFGLTVDNVVANAK 539 P+ VT+RVS+EAGSTFGW K VGSKGKAIGID FGASAPAG IY+++G+TV+ VV AK Sbjct: 680 PSDVTARVSIEAGSTFGWHKIVGSKGKAIGIDKFGASAPAGKIYQEYGITVEAVVEAAK 738
>sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1 Length = 741
Score = 280 bits (715), Expect = 4e-75 Identities = 140/179 (78%), Positives = 157/179 (87%) Frame = +3
Query: 3 FRAMPNILMLRPADGNETAGAYKVAVESRKRPSILALSRQKLPHLPGTSIEGVEKGGYTI 182 FRAMPNILM RPADGNETAGAYKVAV RK PSILALSRQKLP L GTSIEG KGGY + Sbjct: 560 FRAMPNILMFRPADGNETAGAYKVAVLKRKTPSILALSRQKLPQLAGTSIEGAAKGGYIV 619
Query: 183 SCNASGNKPDLILFGTGSELEIAYKAAEVIRKEGKTVRVVSMVSWELFEEQSAEYKESVI 362 S N+SGNKPD+IL GTGSELEIA KAAE ++KEGKTVRVVS V WEL++EQSAEYKESV+ Sbjct: 620 SDNSSGNKPDVILIGTGSELEIAVKAAEELKKEGKTVRVVSFVCWELYDEQSAEYKESVL 679
Query: 363 PAAVTSRVSVEAGSTFGWEKYVGSKGKAIGIDHFGASAPAGTIYKKFGLTVDNVVANAK 539 P++VT+RVS+EAGSTFGW+K+VG KGKAIGID FGASAPA IYK+FG+T + VVA AK Sbjct: 680 PSSVTARVSIEAGSTFGWQKFVGDKGKAIGIDGFGASAPADKIYKEFGITAEAVVAAAK 738
>sp|Q42675|TKTA_CRAPL Transketolase 10 OS=Craterostigma plantagineum GN=TKT10 PE=2 SV=1 Length = 679
Score = 262 bits (670), Expect = 7e-70 Identities = 133/180 (73%), Positives = 155/180 (86%), Gaps = 1/180 (0%) Frame = +3
Query: 3 FRAMPNILMLRPADGNETAGAYKVAVESRKRPSILALSRQKLPHLPGTSIEGVEKGGYTI 182 FRAMPNIL+LRPADGNETAGAYKVAVE+ RPSIL+LSRQKLP LPGTS+EGV +GGY I Sbjct: 497 FRAMPNILVLRPADGNETAGAYKVAVENAGRPSILSLSRQKLPQLPGTSVEGVGRGGYVI 556
Query: 183 SCNAS-GNKPDLILFGTGSELEIAYKAAEVIRKEGKTVRVVSMVSWELFEEQSAEYKESV 359 S N+ G KP++IL GTGSELEIA +A E +RKEGK VRVVS+VSWELF EQS EYKE V Sbjct: 557 SDNSKDGEKPEVILMGTGSELEIAARAGEELRKEGKKVRVVSLVSWELFGEQSKEYKEMV 616
Query: 360 IPAAVTSRVSVEAGSTFGWEKYVGSKGKAIGIDHFGASAPAGTIYKKFGLTVDNVVANAK 539 +P+ VT+RVSVEAGSTFGWE++VG KG+A+GID FGASA A +YK+FG+TV+ VVA AK Sbjct: 617 LPSEVTARVSVEAGSTFGWERFVGLKGRAVGIDRFGASASAERLYKEFGITVEAVVAAAK 676
>sp|Q42677|TKT7_CRAPL Transketolase 7 OS=Craterostigma plantagineum GN=TKT7 PE=2 SV=1 Length = 676
Score = 259 bits (661), Expect = 8e-69 Identities = 128/181 (70%), Positives = 155/181 (85%), Gaps = 2/181 (1%) Frame = +3
Query: 3 FRAMPNILMLRPADGNETAGAYKVAVESRKRPSILALSRQKLPHLPGTSIEGVEKGGYTI 182 FRAMPNIL LRPADGNETAGAY+ AV++ +RPSIL L+RQKLP LPGTSIEGV KGGY I Sbjct: 493 FRAMPNILTLRPADGNETAGAYRAAVQNGERPSILVLARQKLPQLPGTSIEGVSKGGYVI 552
Query: 183 SCNASG--NKPDLILFGTGSELEIAYKAAEVIRKEGKTVRVVSMVSWELFEEQSAEYKES 356 S N+ G +KPD+IL GTGSELEIA +A + +RKEGK VRVVS+V WELF EQS +Y+E+ Sbjct: 553 SDNSRGGNSKPDVILIGTGSELEIAARAGDELRKEGKKVRVVSLVCWELFAEQSEKYRET 612
Query: 357 VIPAAVTSRVSVEAGSTFGWEKYVGSKGKAIGIDHFGASAPAGTIYKKFGLTVDNVVANA 536 V+P+ VT+RVSVEAGSTFGWE+++G KGKA+GID FGASAPA ++K+FG+TV+ VVA A Sbjct: 613 VLPSGVTARVSVEAGSTFGWERFIGPKGKAVGIDRFGASAPAERLFKEFGITVEAVVAAA 672
Query: 537 K 539 K Sbjct: 673 K 673
>sp|Q8YRU9|TKT_ANASP Transketolase OS=Anabaena sp. (strain PCC 7120) GN=tkt PE=1 SV=1 Length = 670
Score = 212 bits (540), Expect = 8e-55 Identities = 105/180 (58%), Positives = 136/180 (75%), Gaps = 2/180 (1%) Frame = +3
Query: 6 RAMPNILMLRPADGNETAGAYKVAVESRKR--PSILALSRQKLPHLPGTSIEGVEKGGYT 179 RA+PN+ ++RPADGNET+GAYKVA+E K P++LA +RQ +P+L GTSI+ V KGGY Sbjct: 489 RAIPNLTVIRPADGNETSGAYKVAIERAKNNAPTLLAFTRQNVPNLAGTSIDDVAKGGYI 548
Query: 180 ISCNASGNKPDLILFGTGSELEIAYKAAEVIRKEGKTVRVVSMVSWELFEEQSAEYKESV 359 + + PDLIL GTGSEL + AAE ++ EGK VRVVS+ +W+LF+ Q A YKESV Sbjct: 549 VV--DTDGTPDLILIGTGSELSLCVTAAEKLKAEGKKVRVVSLAAWDLFDAQDAAYKESV 606
Query: 360 IPAAVTSRVSVEAGSTFGWEKYVGSKGKAIGIDHFGASAPAGTIYKKFGLTVDNVVANAK 539 +P AVT R++VEA S+FGW KY+GS+G A+ ID FGASAP G +KFG +VDNV+A AK Sbjct: 607 LPKAVTKRLAVEAASSFGWHKYIGSEGDAVTIDRFGASAPGGVCLEKFGFSVDNVLAKAK 666
>sp|Q9KAD7|TKT_BACHD Transketolase OS=Bacillus halodurans GN=tkt PE=3 SV=1 Length = 666
Score = 181 bits (458), Expect = 3e-45 Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 3/181 (1%) Frame = +3
Query: 6 RAMPNILMLRPADGNETAGAYKVAVESRKRPSILALSRQKLPHLPGT---SIEGVEKGGY 176 RAMP + ++RPADGNE+ A+K+A+ES+ +P+ L LSRQ LP L G + +GV KG Y Sbjct: 482 RAMPGLSVIRPADGNESVAAWKLALESKDQPTALVLSRQNLPTLEGAVDRAYDGVSKGAY 541
Query: 177 TISCNASGNKPDLILFGTGSELEIAYKAAEVIRKEGKTVRVVSMVSWELFEEQSAEYKES 356 ++ + DL+L +GSE+ +A A E + KEG VVSM SW+ FE QSAEYKE Sbjct: 542 VLA--PANGSADLLLLASGSEVSLAVNAKEALEKEGIHAAVVSMPSWDRFEAQSAEYKEE 599
Query: 357 VIPAAVTSRVSVEAGSTFGWEKYVGSKGKAIGIDHFGASAPAGTIYKKFGLTVDNVVANA 536 V+P+ VT+R+++E GS+ GW KYVG++G + ID FGASAP I ++FG TV +VVA A Sbjct: 600 VLPSDVTARLAIEMGSSLGWAKYVGNQGDVVAIDRFGASAPGERIMEEFGFTVQHVVARA 659
Query: 537 K 539 K Sbjct: 660 K 660
>sp|P66963|TKT_STAAW Transketolase OS=Staphylococcus aureus (strain MW2) GN=tkt PE=3 SV=1 Length = 662
Score = 177 bits (448), Expect = 4e-44 Identities = 91/177 (51%), Positives = 125/177 (70%), Gaps = 3/177 (1%) Frame = +3
Query: 6 RAMPNILMLRPADGNETAGAYKVAVESRKRPSILALSRQKLPHL--PGTSIE-GVEKGGY 176 RA+PN+ ++RPADGNET A++VA+ES P+ L L+RQ LP L P +E GV KG Y Sbjct: 482 RAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAY 541
Query: 177 TISCNASGNKPDLILFGTGSELEIAYKAAEVIRKEGKTVRVVSMVSWELFEEQSAEYKES 356 T+ S P+ +L +GSE+ +A +AA+ + K+GK+VRVVSM +W FE+QS EYKES Sbjct: 542 TVY--GSEETPEFLLLASGSEVSLAVEAAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKES 599
Query: 357 VIPAAVTSRVSVEAGSTFGWEKYVGSKGKAIGIDHFGASAPAGTIYKKFGLTVDNVV 527 VIP++VT RV++E S GW KYVG+ GK I ID FGASAP + +K+G T +N++ Sbjct: 600 VIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGFTKENIL 656
>sp|Q6G9L6|TKT_STAAS Transketolase OS=Staphylococcus aureus (strain MSSA476) GN=tkt PE=3 SV=1 Length = 662
Score = 177 bits (448), Expect = 4e-44 Identities = 91/177 (51%), Positives = 125/177 (70%), Gaps = 3/177 (1%) Frame = +3
Query: 6 RAMPNILMLRPADGNETAGAYKVAVESRKRPSILALSRQKLPHL--PGTSIE-GVEKGGY 176 RA+PN+ ++RPADGNET A++VA+ES P+ L L+RQ LP L P +E GV KG Y Sbjct: 482 RAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAY 541
Query: 177 TISCNASGNKPDLILFGTGSELEIAYKAAEVIRKEGKTVRVVSMVSWELFEEQSAEYKES 356 T+ S P+ +L +GSE+ +A +AA+ + K+GK+VRVVSM +W FE+QS EYKES Sbjct: 542 TVY--GSEETPEFLLLASGSEVSLAVEAAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKES 599
Query: 357 VIPAAVTSRVSVEAGSTFGWEKYVGSKGKAIGIDHFGASAPAGTIYKKFGLTVDNVV 527 VIP++VT RV++E S GW KYVG+ GK I ID FGASAP + +K+G T +N++ Sbjct: 600 VIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAPGDLVVEKYGFTKENIL 656
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7ZYI1 |
Definition |
tr|B7ZYI1|B7ZYI1_MAIZE Putative uncharacterized protein OS=Zea mays |
Align length |
179 |
Score (bit) |
301.0 |
E-value |
1.0e-80 |
Report |
|