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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946401
Clone id YMU02A01NGRL0012_I03
Library
Length 439
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_I03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGCCCATTACGGCCGGGCATGCTCGATGATGAGTTCT
CTTGGAAACTTTGGAAATGGCTGCAACGATACTTGTGTTGTCGGCATCAGAATCAGCAGT
GTTCAGCATCGATCCTTGTTGGAGGGGGGTCTCATCAATCAATAACGCCATCTCATTGCT
CTTTATGGTATGGTCATCCCTGACGCCTTGCAAAGGTGTTGCAATCTTCTTGCAAGTAGG
AAGAGGACCAACCATGTATAGTCCGGTCACCATGCAGCTTTGTCAAGTTAAGCAATTTGT
ATTTCTTATGGGAGATGTATCTTTGTAGCATGGAAGCTTGACGCGAGGATTGGTTCTGAA
CAGTCTTAGAATGATGGGGTGAAAAGGTTGGAGGGCTTTGCTGTAGCTTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q502I9
Definition sp|Q502I9|FCHO2_DANRE FCH domain only protein 2 OS=Danio rerio
Align length 58
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946401|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_I03, 5'
         (369 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q502I9|FCHO2_DANRE FCH domain only protein 2 OS=Danio rerio G...    32   0.99 
sp|Q9HGI7|ERF3_CANMA Eukaryotic peptide chain release factor GTP...    30   2.9  
sp|Q08817|SOG2_YEAST Leucine-rich repeat-containing protein SOG2...    30   4.9  
sp|Q924V4|S15A3_RAT Solute carrier family 15 member 3 OS=Rattus ...    30   4.9  
sp|P36120|DBP7_YEAST ATP-dependent RNA helicase DBP7 OS=Saccharo...    30   4.9  
sp|A6ZZY8|DBP7_YEAS7 ATP-dependent RNA helicase DBP7 OS=Saccharo...    30   4.9  
sp|Q01778|HUNB_MUSDO Protein hunchback OS=Musca domestica GN=hb ...    29   6.4  

>sp|Q502I9|FCHO2_DANRE FCH domain only protein 2 OS=Danio rerio
           GN=fcho2 PE=2 SV=1
          Length = 848

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
 Frame = -2

Query: 182 ATPLQGVRDDHTIKSNEM----ALLIDETPLQQGSMLNTADSDADNTSIVAAISKVSK 21
           A   QG+ ++H ++  E+    +L ++ET +Q G +     ++ +NTS+ + I K+++
Sbjct: 199 AQKFQGIEEEHILRMQEIIHSYSLSVEETHIQIGEVQQEFVNNMENTSVESLIEKLAE 256


>sp|Q9HGI7|ERF3_CANMA Eukaryotic peptide chain release factor
           GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3
           SV=2
          Length = 712

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -2

Query: 317 RTNPRVKLPCYKDTSPIRNTNCLT*QSCMVTGLYMVGPLPTCKKIATPLQG-VRDDHTIK 141
           R NP+   P Y+  S +   + +   +  + G +M+      K + T ++G +   H  K
Sbjct: 486 RVNPK-DCPWYEGPSLLEYLDNMDTMNRKINGPFMMPVSGKMKDLGTVVEGKIESGHVKK 544

Query: 140 SNEMALLIDETPLQQGSMLNTADSDAD 60
              + L+ ++TP++  ++ N  + +AD
Sbjct: 545 GTNLILMPNKTPVEVLTIYNETEQEAD 571


>sp|Q08817|SOG2_YEAST Leucine-rich repeat-containing protein SOG2
           OS=Saccharomyces cerevisiae GN=SOG2 PE=1 SV=1
          Length = 791

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 8   DDEFSWKLWKWLQRYLCCRHQNQQCSASILVGGGSHQSITPSHCS 142
           DD+ S    K  +++   RH+    S+SI  GGG   S T +HCS
Sbjct: 447 DDQVSGSASKAPKKHSFSRHETS--SSSITSGGGPAASTTSTHCS 489


>sp|Q924V4|S15A3_RAT Solute carrier family 15 member 3 OS=Rattus
           norvegicus GN=Slc15a3 PE=2 SV=1
          Length = 582

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 353 LQPFHPIILRLFRTNPRVKLPCYKDTSPIR 264
           LQ  H  I  +FRTNP + LP   D+S  R
Sbjct: 341 LQGLHLHIPNIFRTNPNISLPLRSDSSNYR 370


>sp|P36120|DBP7_YEAST ATP-dependent RNA helicase DBP7
           OS=Saccharomyces cerevisiae GN=DBP7 PE=1 SV=1
          Length = 742

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 365 YSKALQPFHPIILRLFRTNPRVKLPCYKDTSPIRN 261
           Y   +QP+HP+   L + +  + +P +KD +  RN
Sbjct: 575 YMDYIQPYHPMGWELLKFDKEILMPAFKDVNVNRN 609


>sp|A6ZZY8|DBP7_YEAS7 ATP-dependent RNA helicase DBP7
           OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP7 PE=3
           SV=1
          Length = 742

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 365 YSKALQPFHPIILRLFRTNPRVKLPCYKDTSPIRN 261
           Y   +QP+HP+   L + +  + +P +KD +  RN
Sbjct: 575 YMDYIQPYHPMGWELLKFDKEILMPAFKDVNVNRN 609


>sp|Q01778|HUNB_MUSDO Protein hunchback OS=Musca domestica GN=hb
           PE=3 SV=2
          Length = 817

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 366 LQQSPPTFSPHHSKTVQNQSSRQASMLQRYISHKKYKLLNLTKLHGDRTIHGWSSSYLQE 187
           ++Q P T +PHH    Q+ S   +      ++H    L N  K H     +G  + +LQ 
Sbjct: 47  IKQEPGTINPHHQHPQQHSSMMASQPQHSPLTHSANHLENYLKQHAH---NGGGAHHLQF 103

Query: 186 DCNTFA 169
             N+ A
Sbjct: 104 SDNSGA 109
tr_hit_id Q29YR2
Definition tr|Q29YR2|Q29YR2_9TREM Cytochrome c oxidase subunit 1 (Fragment) OS=Hapalorhynchus gracilis
Align length 56
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946401|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_I03, 5'
         (369 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q29YR2|Q29YR2_9TREM Cytochrome c oxidase subunit 1 (Fragment)...    37   0.64 
tr|B5IMQ0|B5IMQ0_9CHRO ABC transporter, ATP-binding protein doma...    36   1.1  

>tr|Q29YR2|Q29YR2_9TREM Cytochrome c oxidase subunit 1 (Fragment)
           OS=Hapalorhynchus gracilis GN=CO1 PE=3 SV=1
          Length = 247

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = +1

Query: 94  PCWRGVSSIN----NAISLLFMVWSSLTPCKGVAIFLQVGRGPTMYSPVTMQLCQV 249
           P   G+S +N    NA+SL  M+ S+L  C G+++F   G G T+Y P++  +C V
Sbjct: 59  PLMSGLSDLNLPRLNALSLWLMLPSAL--CMGLSMFYGTGVGWTLYPPLSSSMCGV 112


>tr|B5IMQ0|B5IMQ0_9CHRO ABC transporter, ATP-binding protein domain
           protein OS=Cyanobium sp. PCC 7001 GN=CPCC7001_788 PE=4
           SV=1
          Length = 514

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 29/108 (26%), Positives = 46/108 (42%)
 Frame = +1

Query: 16  VLLETLEMAATILVLSASESAVFSIDPCWRGVSSINNAISLLFMVWSSLTPCKGVAIFLQ 195
           ++  T    A +L L+      FS +   +G +++ N I+ +F VW   TP      F Q
Sbjct: 182 IITSTAAQLAGVLTLAVGVWMSFSSN---QGPAAMGNLIASMFFVWRVFTP------FQQ 232

Query: 196 VGRGPTMYSPVTMQLCQVKQFVFLMGDVSL*HGSLTRGLVLNSLRMMG 339
           +      YS +  Q  Q+ QF+ L             G+ L+S RM G
Sbjct: 233 LMNALLRYSTMRTQYAQLNQFLKLRSP-----SRTAGGMALSSTRMRG 275