DK946402 |
Clone id |
YMU02A01NGRL0012_I04 |
Library |
YMU02 |
Length |
355 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_I04. 5' end sequence. |
Accession |
DK946402 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL182Contig1 |
Sequence |
GTTGCAAGGGCAAGGACTGCAAGAAGCACACTTTGCATAAGGTGACTCAATACAAGAAGG GCAAGGACAGTCTCTATGTGCAAGGAAAGAGGCGTTATGACAGGAAGCAATCTGGCTATG GTGGCCAAACAAAGCCGGTCTTCCACAAGAAGGCTAAGACTACAAAGAAAATTGTGTTAA GGTTGCAATGTCAGAGTTGCAAGCATGTAACTCAGCATCCAATCAAGCGATGCAAGCACT TTGAGATTGGTGGTGACAAGAAGCGCAAGGGTGCCATGTACTAGGTCAATTTTTGCAGCA TCATGATGAATCGAAGAGTTTTGCTCANAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q96499 |
Definition |
sp|Q96499|RL44_GOSHI 60S ribosomal protein L44 OS=Gossypium hirsutum |
Align length |
90 |
Score (bit) |
181.0 |
E-value |
1.0e-45 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9ST20 |
Definition |
tr|A9ST20|A9ST20_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
90 |
Score (bit) |
187.0 |
E-value |
2.0e-46 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946402|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_I04, 5' (328 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9ST20|A9ST20_PHYPA Predicted protein OS=Physcomitrella paten... 187 2e-46 tr|A9RD45|A9RD45_PHYPA Predicted protein OS=Physcomitrella paten... 186 4e-46 tr|A9RQN3|A9RQN3_PHYPA Predicted protein OS=Physcomitrella paten... 186 6e-46 tr|A9RFG1|A9RFG1_PHYPA Predicted protein (Fragment) OS=Physcomit... 186 6e-46 tr|A9PD13|A9PD13_POPTR Putative uncharacterized protein OS=Popul... 183 3e-45 tr|Q00508|Q00508_CANMA Ribosomal protein L41 OS=Candida maltosa ... 182 9e-45 tr|A7Q2A2|A7Q2A2_VITVI Chromosome chr13 scaffold_45, whole genom... 181 2e-44 tr|A7P2V6|A7P2V6_VITVI Chromosome chr1 scaffold_5, whole genome ... 181 2e-44 tr|A7P2V5|A7P2V5_VITVI Chromosome chr1 scaffold_5, whole genome ... 181 2e-44 tr|B8LKF1|B8LKF1_PICSI Putative uncharacterized protein OS=Picea... 180 3e-44 tr|Q8H5N0|Q8H5N0_ORYSJ Os07g0450000 protein OS=Oryza sativa subs... 179 6e-44 tr|Q0D5Z3|Q0D5Z3_ORYSJ Os07g0523100 protein OS=Oryza sativa subs... 179 6e-44 tr|Q0D5Z2|Q0D5Z2_ORYSJ Os07g0523300 protein (Fragment) OS=Oryza ... 179 6e-44 tr|B6TXV2|B6TXV2_MAIZE 60S ribosomal protein L44 OS=Zea mays PE=... 179 6e-44 tr|B3TLV9|B3TLV9_ELAGV 60S ribosomal protein L44 OS=Elaeis guine... 179 6e-44 tr|A9P9G6|A9P9G6_POPTR Putative uncharacterized protein OS=Popul... 179 6e-44 tr|A6N0K7|A6N0K7_ORYSI Putative uncharacterized protein OS=Oryza... 179 6e-44 tr|B3TLU0|B3TLU0_ELAGV 60S ribosomal protein L44 OS=Elaeis guine... 178 1e-43 tr|B3TLU1|B3TLU1_ELAGV 60S ribosomal protein L44 OS=Elaeis guine... 177 2e-43 tr|Q94ER6|Q94ER6_BRARP 60S ribosomal protein L144 (Fragment) OS=... 177 2e-43 tr|B6SIY6|B6SIY6_MAIZE 60S ribosomal protein L44 OS=Zea mays PE=... 177 2e-43 tr|B6SHJ5|B6SHJ5_MAIZE 60S ribosomal protein L44 OS=Zea mays PE=... 177 2e-43 tr|B7FGY8|B7FGY8_MEDTR Putative uncharacterized protein OS=Medic... 176 4e-43 tr|A9NQ93|A9NQ93_PICSI Putative uncharacterized protein OS=Picea... 176 7e-43 tr|Q6RI22|Q6RI22_9ASPA 60S ribosomal protein L44 OS=Phalaenopsis... 175 9e-43 tr|B8LRK8|B8LRK8_PICSI Putative uncharacterized protein OS=Picea... 173 4e-42 tr|Q2V9C3|Q2V9C3_SOLTU Ribosomal protein L41-like OS=Solanum tub... 172 6e-42 tr|B0Z9N5|B0Z9N5_9BILA Ribosomal protein rpl36a OS=Lineus viridi... 168 1e-40 tr|A9UDU7|A9UDU7_9BILA Putative 60S ribosomal protein RPL36A OS=... 167 2e-40 tr|Q6B8B7|Q6B8B7_9ACAR Ribosomal protein L44 OS=Ixodes pacificus... 167 3e-40
>tr|A9ST20|A9ST20_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_106959 PE=3 SV=1 Length = 105
Score = 187 bits (475), Expect = 2e-46 Identities = 86/90 (95%), Positives = 87/90 (96%) Frame = +3
Query: 3 CKGKDCKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 182 C GK CKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR Sbjct: 12 CPGKACKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 71
Query: 183 LQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 272 LQCQ+CKHVTQHPIKRCKHFEIGGDKK KG Sbjct: 72 LQCQACKHVTQHPIKRCKHFEIGGDKKGKG 101
>tr|A9RD45|A9RD45_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_109414 PE=3 SV=1 Length = 105
Score = 186 bits (473), Expect = 4e-46 Identities = 85/90 (94%), Positives = 86/90 (95%) Frame = +3
Query: 3 CKGKDCKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 182 C GK CKKHTLHKVTQYKKGKDSLY QGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR Sbjct: 12 CPGKSCKKHTLHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 71
Query: 183 LQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 272 LQCQ+CKHVTQHPIKRCKHFEIGGDKK KG Sbjct: 72 LQCQACKHVTQHPIKRCKHFEIGGDKKGKG 101
>tr|A9RQN3|A9RQN3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_177351 PE=3 SV=1 Length = 105
Score = 186 bits (471), Expect = 6e-46 Identities = 85/90 (94%), Positives = 86/90 (95%) Frame = +3
Query: 3 CKGKDCKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 182 C GK CKKHTLHKVTQYKKGKDSLY QGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR Sbjct: 12 CPGKACKKHTLHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 71
Query: 183 LQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 272 LQCQ+CKHVTQHPIKRCKHFEIGGDKK KG Sbjct: 72 LQCQACKHVTQHPIKRCKHFEIGGDKKGKG 101
>tr|A9RFG1|A9RFG1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_129054 PE=3 SV=1 Length = 105
Score = 186 bits (471), Expect = 6e-46 Identities = 85/90 (94%), Positives = 86/90 (95%) Frame = +3
Query: 3 CKGKDCKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 182 C GK CKKHTLHKVTQYKKGKDSLY QGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR Sbjct: 12 CPGKACKKHTLHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 71
Query: 183 LQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 272 LQCQ+CKHVTQHPIKRCKHFEIGGDKK KG Sbjct: 72 LQCQACKHVTQHPIKRCKHFEIGGDKKGKG 101
>tr|A9PD13|A9PD13_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=3 SV=1 Length = 105
Score = 183 bits (465), Expect = 3e-45 Identities = 84/90 (93%), Positives = 86/90 (95%) Frame = +3
Query: 3 CKGKDCKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 182 CK K+CKKHTLHKVTQYKKGKDSL QGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR Sbjct: 12 CKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 71
Query: 183 LQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 272 LQCQSCKHV+QHPIKRCKHFEIGGDKK KG Sbjct: 72 LQCQSCKHVSQHPIKRCKHFEIGGDKKGKG 101
>tr|Q00508|Q00508_CANMA Ribosomal protein L41 OS=Candida maltosa PE=3 SV=1 Length = 105
Score = 182 bits (461), Expect = 9e-45 Identities = 83/90 (92%), Positives = 85/90 (94%) Frame = +3
Query: 3 CKGKDCKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 182 CK K+CKKHTLHKVTQYKKGKDSL QGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR Sbjct: 12 CKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 71
Query: 183 LQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 272 LQCQ CKHV+QHPIKRCKHFEIGGDKK KG Sbjct: 72 LQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 101
>tr|A7Q2A2|A7Q2A2_VITVI Chromosome chr13 scaffold_45, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028799001 PE=3 SV=1 Length = 115
Score = 181 bits (458), Expect = 2e-44 Identities = 82/90 (91%), Positives = 85/90 (94%) Frame = +3
Query: 3 CKGKDCKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 182 CK K+C+KHTLHKVTQYKKGKDSL QGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR Sbjct: 22 CKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 81
Query: 183 LQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 272 LQCQ CKHV+QHPIKRCKHFEIGGDKK KG Sbjct: 82 LQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 111
>tr|A7P2V6|A7P2V6_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030200001 PE=3 SV=1 Length = 109
Score = 181 bits (458), Expect = 2e-44 Identities = 82/90 (91%), Positives = 85/90 (94%) Frame = +3
Query: 3 CKGKDCKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 182 CK K+C+KHTLHKVTQYKKGKDSL QGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR Sbjct: 16 CKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 75
Query: 183 LQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 272 LQCQ CKHV+QHPIKRCKHFEIGGDKK KG Sbjct: 76 LQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 105
>tr|A7P2V5|A7P2V5_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030198001 PE=3 SV=1 Length = 151
Score = 181 bits (458), Expect = 2e-44 Identities = 82/90 (91%), Positives = 85/90 (94%) Frame = +3
Query: 3 CKGKDCKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 182 CK K+C+KHTLHKVTQYKKGKDSL QGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR Sbjct: 58 CKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 117
Query: 183 LQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 272 LQCQ CKHV+QHPIKRCKHFEIGGDKK KG Sbjct: 118 LQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 147
>tr|B8LKF1|B8LKF1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 105
Score = 180 bits (457), Expect = 3e-44 Identities = 83/90 (92%), Positives = 85/90 (94%) Frame = +3
Query: 3 CKGKDCKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR 182 CK K CKKHTLHKVTQYKKGKDSL VQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVL+ Sbjct: 12 CKNKACKKHTLHKVTQYKKGKDSLAVQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLK 71
Query: 183 LQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 272 LQCQSCKH +QHPIKRCKHFEIGGDKK KG Sbjct: 72 LQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
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