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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946411
Clone id YMU02A01NGRL0012_I14
Library
Length 148
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_I14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAGATAAATCTTGAGAACAAGAAAACTTGGCACCCAAGTCATAATTTGCCACACAAATTA
CCTGCTCAAATAATTTTTTGGATAATCTGTCTGCTCAAAAACTGTCGAATAAAGATTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q62470
Definition sp|Q62470|ITA3_MOUSE Integrin alpha-3 OS=Mus musculus
Align length 31
Score (bit) 28.9
E-value 8.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946411|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_I14, 5'
         (117 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62470|ITA3_MOUSE Integrin alpha-3 OS=Mus musculus GN=Itga3 P...    29   8.4  
sp|P26006|ITA3_HUMAN Integrin alpha-3 OS=Homo sapiens GN=ITGA3 P...    29   8.4  
sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus GN=I...    29   8.4  

>sp|Q62470|ITA3_MOUSE Integrin alpha-3 OS=Mus musculus GN=Itga3 PE=1
            SV=1
          Length = 1053

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 4    INLENKKTWHP---SHNLPHKLPAQIIFWII 87
            IN+ENK TW        L  +LPA+I  W++
Sbjct: 967  INMENKTTWFSVDIDSELVEELPAEIELWLV 997


>sp|P26006|ITA3_HUMAN Integrin alpha-3 OS=Homo sapiens GN=ITGA3 PE=1
            SV=3
          Length = 1066

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 4    INLENKKTWHP---SHNLPHKLPAQIIFWII 87
            IN+ENK TW        L  +LPA+I  W++
Sbjct: 965  INMENKTTWFSVDIDSELVEELPAEIELWLV 995


>sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus GN=ITGA3
            PE=1 SV=2
          Length = 1066

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 4    INLENKKTWHP---SHNLPHKLPAQIIFWII 87
            IN+ENK TW        L  +LPA+I  W++
Sbjct: 965  INMENKTTWFSVDIDSELVEELPAEIELWLV 995
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946411|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_I14, 5'
         (117 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******