DK946416 |
Clone id |
YMU02A01NGRL0012_I22 |
Library |
YMU02 |
Length |
410 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_I22. 5' end sequence. |
Accession |
DK946416 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL2Contig2 |
Sequence |
TGGCTACTACGATGGGCGGTACTGGGTGATGTGGAAGCTACCCATGTTTGGCTGCCAAGA TGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAGCCTTCAT CCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTCCAGAA GCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAATTTAGTTGGCATGAATGCCTGCTTCCC ATTTCCCACTGGCGCCTAACAAGCTTGCTCTTATGAGCTTTTGTGTCCCAGCCACTTTGC ATACATAATGAAACAACTTCCCAGTGGTGGCTTCNNAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O22573 |
Definition |
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis |
Align length |
61 |
Score (bit) |
103.0 |
E-value |
3.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946416|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_I22, 5' (336 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 103 3e-22 sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 103 3e-22 sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha... 102 6e-22 sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 101 1e-21 sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 101 1e-21 sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 101 1e-21 sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 101 1e-21 sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha... 100 2e-21 sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 100 2e-21 sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai... 100 3e-21 sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 100 4e-21 sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai... 99 5e-21 sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 99 7e-21 sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 99 7e-21 sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 99 7e-21 sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 99 7e-21 sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small cha... 99 9e-21 sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small cha... 99 9e-21 sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 99 9e-21 sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha... 99 9e-21 sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 99 9e-21 sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 99 9e-21 sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 98 1e-20 sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai... 98 1e-20 sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 98 1e-20 sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha... 98 1e-20 sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha... 98 1e-20 sp|Q39748|RBS6_FLAPR Ribulose bisphosphate carboxylase small cha... 97 3e-20 sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai... 97 3e-20 sp|P16881|RBS_EUGGR Ribulose bisphosphate carboxylase small chai... 96 4e-20
>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1 Length = 179
Score = 103 bits (257), Expect = 3e-22 Identities = 45/61 (73%), Positives = 50/61 (81%) Frame = +2
Query: 2 GYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQK 181 GYYDGRYW MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+K Sbjct: 118 GYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEK 177
Query: 182 P 184 P Sbjct: 178 P 178
>sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1 Length = 179
Score = 103 bits (257), Expect = 3e-22 Identities = 45/61 (73%), Positives = 50/61 (81%) Frame = +2
Query: 2 GYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQK 181 GYYDGRYW MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+K Sbjct: 118 GYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEK 177
Query: 182 P 184 P Sbjct: 178 P 178
>sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1 Length = 179
Score = 102 bits (254), Expect = 6e-22 Identities = 44/61 (72%), Positives = 50/61 (81%) Frame = +2
Query: 2 GYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQK 181 GYYDGRYW MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V++ Sbjct: 118 GYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVER 177
Query: 182 P 184 P Sbjct: 178 P 178
>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1 Length = 181
Score = 101 bits (252), Expect = 1e-21 Identities = 43/61 (70%), Positives = 49/61 (80%) Frame = +2
Query: 2 GYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQK 181 GYYDGRYW MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GFD RQVQ F+V K Sbjct: 117 GYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAK 176
Query: 182 P 184 P Sbjct: 177 P 177
>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1 Length = 171
Score = 101 bits (251), Expect = 1e-21 Identities = 43/61 (70%), Positives = 50/61 (81%) Frame = +2
Query: 2 GYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQK 181 GYYDGRYWVMWKLPMFGC +A+ V+ E+ ECAK YP+AFIRV+GFD RQVQ F+V K Sbjct: 110 GYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHK 169
Query: 182 P 184 P Sbjct: 170 P 170
>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1 Length = 189
Score = 101 bits (251), Expect = 1e-21 Identities = 44/61 (72%), Positives = 49/61 (80%) Frame = +2
Query: 2 GYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQK 181 GYYDGRYWVMWKLPMFGC +A+ VL E+ ECAK YP AFIRV+GFD RQVQ F+V K Sbjct: 126 GYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHK 185
Query: 182 P 184 P Sbjct: 186 P 186
>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1 Length = 182
Score = 101 bits (251), Expect = 1e-21 Identities = 41/61 (67%), Positives = 49/61 (80%) Frame = +2
Query: 2 GYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQK 181 GYYDGRYW MWKLPMFGC D++ VL+E+ EC K YP AFIR++GFD KRQVQ+ F+ K Sbjct: 119 GYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYK 178
Query: 182 P 184 P Sbjct: 179 P 179
>sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1 Length = 179
Score = 100 bits (250), Expect = 2e-21 Identities = 44/61 (72%), Positives = 49/61 (80%) Frame = +2
Query: 2 GYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQK 181 GYYDGRYW MWKLPMFGC AA V++E AEC KEYP AFIRV+GFD RQVQ F+V+K Sbjct: 118 GYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEK 177
Query: 182 P 184 P Sbjct: 178 P 178
>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1 Length = 180
Score = 100 bits (250), Expect = 2e-21 Identities = 42/62 (67%), Positives = 48/62 (77%) Frame = +2
Query: 2 GYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQK 181 GYYDGRYW MWKLPMFGC D A VL E+ EC KEYP AFIR++GFD+ RQVQ F+ K Sbjct: 117 GYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYK 176
Query: 182 PS 187 P+ Sbjct: 177 PA 178
>sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1 Length = 82
Score = 100 bits (248), Expect = 3e-21 Identities = 41/61 (67%), Positives = 48/61 (78%) Frame = +2
Query: 2 GYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQK 181 GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD RQVQ F+ K Sbjct: 16 GYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYK 75
Query: 182 P 184 P Sbjct: 76 P 76
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q43110 |
Definition |
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata |
Align length |
62 |
Score (bit) |
122.0 |
E-value |
1.0e-26 |
Report |
|