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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946417
Clone id YMU02A01NGRL0012_I23
Library
Length 206
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_I23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTAGAAAGGCTTGGCCTTCTTTCTAAGGCTGAAGGTCTTGGAGTCTTATCTGCAGCAACG
AACCCAAGTACCCCTGGGACTTTGTTGACGCTTGCCTTGGTTTTGCTCGCAGGGGGTCCG
GCTTTTGTTTACTTTGTCCCAGAAGATGCAATCTGGCAGATAGTTGTGCAGTCAGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946417|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_I23, 5'
         (175 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q9SD79
Definition tr|Q9SD79|Q9SD79_ARATH Putative uncharacterized protein F13G24.250 OS=Arabidopsis thaliana
Align length 57
Score (bit) 54.3
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946417|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_I23, 5'
         (175 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SD79|Q9SD79_ARATH Putative uncharacterized protein F13G24.2...    54   3e-06
tr|Q8VYV1|Q8VYV1_ARATH AT5g08050/F13G24_250 OS=Arabidopsis thali...    54   3e-06
tr|A9S2G0|A9S2G0_PHYPA Predicted protein (Fragment) OS=Physcomit...    50   6e-05
tr|A9NMI1|A9NMI1_PICSI Putative uncharacterized protein OS=Picea...    50   6e-05
tr|Q2QN86|Q2QN86_ORYSJ Os12g0575000 protein OS=Oryza sativa subs...    49   2e-04
tr|B8BMN2|B8BMN2_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A3CIP9|A3CIP9_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|B4FV96|B4FV96_MAIZE Putative uncharacterized protein OS=Zea m...    48   2e-04
tr|A9PGF4|A9PGF4_POPTR Putative uncharacterized protein OS=Popul...    48   2e-04
tr|A7QI04|A7QI04_VITVI Chromosome chr17 scaffold_101, whole geno...    45   0.002
tr|A2ZE10|A2ZE10_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.17 

>tr|Q9SD79|Q9SD79_ARATH Putative uncharacterized protein F13G24.250
           OS=Arabidopsis thaliana GN=F13G24.250 PE=4 SV=1
          Length = 158

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 27/57 (47%), Positives = 32/57 (56%)
 Frame = +1

Query: 1   VERLGLLSKAEGLGVLSAATNPSXXXXXXXXXXXXXXXXXXFVYFVPEDAIWQIVVQ 171
           +ERLGLL+KAE  GVLSAATNP                   F Y VPED  W++V+Q
Sbjct: 74  IERLGLLTKAEEFGVLSAATNPETPGTLFTLSLGLLLLGPVFAYVVPEDYTWEVVIQ 130


>tr|Q8VYV1|Q8VYV1_ARATH AT5g08050/F13G24_250 OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 158

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 27/57 (47%), Positives = 32/57 (56%)
 Frame = +1

Query: 1   VERLGLLSKAEGLGVLSAATNPSXXXXXXXXXXXXXXXXXXFVYFVPEDAIWQIVVQ 171
           +ERLGLL+KAE  GVLSAATNP                   F Y VPED  W++V+Q
Sbjct: 74  IERLGLLTKAEEFGVLSAATNPETPGTLFTLSLGLLLLGPVFAYVVPEDYTWEVVIQ 130


>tr|A9S2G0|A9S2G0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123160 PE=4 SV=1
          Length = 119

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 29/57 (50%), Positives = 33/57 (57%)
 Frame = +1

Query: 1   VERLGLLSKAEGLGVLSAATNPSXXXXXXXXXXXXXXXXXXFVYFVPEDAIWQIVVQ 171
           +E LGLLSKAE LGVLSAATNP+                  FVYFVPE +   IV+Q
Sbjct: 35  IESLGLLSKAEELGVLSAATNPATPGALLTTALALLLLGPVFVYFVPETSTPLIVLQ 91


>tr|A9NMI1|A9NMI1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 183

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 24/57 (42%), Positives = 34/57 (59%)
 Frame = +1

Query: 1   VERLGLLSKAEGLGVLSAATNPSXXXXXXXXXXXXXXXXXXFVYFVPEDAIWQIVVQ 171
           +E LGLLSKAE LG+LS+AT+P+                   VYFVP+D+ W++ +Q
Sbjct: 99  IESLGLLSKAEELGILSSATDPNTPGALLNLAIALLIAGPLCVYFVPDDSSWEVALQ 155


>tr|Q2QN86|Q2QN86_ORYSJ Os12g0575000 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0575000 PE=2 SV=1
          Length = 190

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 27/58 (46%), Positives = 32/58 (55%)
 Frame = +1

Query: 1   VERLGLLSKAEGLGVLSAATNPSXXXXXXXXXXXXXXXXXXFVYFVPEDAIWQIVVQS 174
           VERLGLLSKAE L VLSAAT+P                    VY VPE+  W++ VQ+
Sbjct: 105 VERLGLLSKAEELEVLSAATDPGTPGALLGVALLLLAAGPAVVYLVPEEYPWEVAVQA 162


>tr|B8BMN2|B8BMN2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38846 PE=4 SV=1
          Length = 190

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 27/58 (46%), Positives = 32/58 (55%)
 Frame = +1

Query: 1   VERLGLLSKAEGLGVLSAATNPSXXXXXXXXXXXXXXXXXXFVYFVPEDAIWQIVVQS 174
           VERLGLLSKAE L VLSAAT+P                    VY VPE+  W++ VQ+
Sbjct: 105 VERLGLLSKAEELEVLSAATDPGTPGALLGVALLLLAAGPAVVYLVPEEYPWEVAVQA 162


>tr|A3CIP9|A3CIP9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035171 PE=4 SV=1
          Length = 197

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 27/58 (46%), Positives = 32/58 (55%)
 Frame = +1

Query: 1   VERLGLLSKAEGLGVLSAATNPSXXXXXXXXXXXXXXXXXXFVYFVPEDAIWQIVVQS 174
           VERLGLLSKAE L VLSAAT+P                    VY VPE+  W++ VQ+
Sbjct: 112 VERLGLLSKAEELEVLSAATDPGTPGALLGVALLLLAAGPAVVYLVPEEYPWEVAVQA 169


>tr|B4FV96|B4FV96_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 193

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 25/58 (43%), Positives = 31/58 (53%)
 Frame = +1

Query: 1   VERLGLLSKAEGLGVLSAATNPSXXXXXXXXXXXXXXXXXXFVYFVPEDAIWQIVVQS 174
           +ERLGLLSK E LG LSAAT+P                    VY VPE+  WQ+ +Q+
Sbjct: 108 MERLGLLSKLEELGALSAATDPGTPGALLALALPLLAAGPAVVYLVPEEQAWQVALQA 165


>tr|A9PGF4|A9PGF4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 194

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 25/57 (43%), Positives = 31/57 (54%)
 Frame = +1

Query: 1   VERLGLLSKAEGLGVLSAATNPSXXXXXXXXXXXXXXXXXXFVYFVPEDAIWQIVVQ 171
           +E+LGLLSKAE LGVLSAAT+P                     Y VPED  W++ +Q
Sbjct: 110 IEKLGLLSKAEELGVLSAATDPGTPGALLSLSLGLLFLGPSCAYLVPEDYPWEVALQ 166


>tr|A7QI04|A7QI04_VITVI Chromosome chr17 scaffold_101, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000042001
           PE=4 SV=1
          Length = 206

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +1

Query: 1   VERLGLLSKAEGLGVLSAATNPSXXXXXXXXXXXXXXXXXXFVYFVPEDAIWQIVVQ 171
           +E+LGLLSKAE  G+LSAAT+P                     + VPED  W++ +Q
Sbjct: 122 IEKLGLLSKAEEFGILSAATDPGTPGALLSLSLVLLLLGPSCAFLVPEDYPWEVALQ 178