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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946419
Clone id YMU02A01NGRL0012_J02
Library
Length 334
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_J02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATAGCCAAACATTGGAAGACGAATGAGGCAGAGGCTGTGGAGACAGCCAAGGAGTGGAC
CCGACTGTATGCTTCTGCTTGATGGTGTCAATTATATTCGAAATATTTTGTTTACTTGAT
GAAGGAAAGTTACATACACGCATGCCATTGTACTGAGCTGAAGCAACTGGTGGAACTTGC
CTCTGTGTTTTACAAAATACGCTAGGCTGATCATAACAGTTAATAGACAGTTTGCAGCAA
TGCCAAAAGTCTAACTGACACAGATGAAATTACGATTGTTTTTGCTGTCAGTCTGGCTTT
GAAAGATTAAAATTCTAAAATTACTCTTCCTCTC
■■Homology search results ■■ -
sp_hit_id Q9FZ48
Definition sp|Q9FZ48|UBC36_ARATH Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana
Align length 25
Score (bit) 54.7
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946419|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_J02, 5'
         (334 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FZ48|UBC36_ARATH Ubiquitin carrier protein E2 36 OS=Arabido...    55   1e-07
sp|Q94A97|UBC35_ARATH Ubiquitin carrier protein E2 35 OS=Arabido...    54   3e-07
sp|Q86K32|UBE2N_DICDI Probable ubiquitin-conjugating enzyme E2 N...    45   9e-05
sp|Q5R7J6|UBE2N_PONAB Ubiquitin-conjugating enzyme E2 N OS=Pongo...    45   1e-04
sp|P61089|UBE2N_MOUSE Ubiquitin-conjugating enzyme E2 N OS=Mus m...    45   1e-04
sp|Q4R4I1|UBE2N_MACFA Ubiquitin-conjugating enzyme E2 N OS=Macac...    45   1e-04
sp|P61088|UBE2N_HUMAN Ubiquitin-conjugating enzyme E2 N OS=Homo ...    45   1e-04
sp|Q0P5K3|UBE2N_BOVIN Ubiquitin-conjugating enzyme E2 N OS=Bos t...    45   1e-04
sp|Q5JXB2|UE2NL_HUMAN Putative ubiquitin-conjugating enzyme E2 N...    43   4e-04
sp|Q9EQX9|UBE2N_RAT Ubiquitin-conjugating enzyme E2 N OS=Rattus ...    43   4e-04
sp|P35128|UBE2N_DROME Ubiquitin-conjugating enzyme E2 N OS=Droso...    37   0.024
sp|O13685|UBC13_SCHPO Ubiquitin-conjugating enzyme E2 13 OS=Schi...    35   0.090
sp|A5G460|ADD_GEOUR Adenosine deaminase OS=Geobacter uraniireduc...    32   0.99 
sp|P31629|ZEP2_HUMAN Transcription factor HIVEP2 OS=Homo sapiens...    32   1.3  
sp|P78332|RBM6_HUMAN RNA-binding protein 6 OS=Homo sapiens GN=RB...    31   2.2  
sp|Q3UHF7|ZEP2_MOUSE Transcription factor HIVEP2 OS=Mus musculus...    30   2.9  
sp|P15732|UBC5_YEAST Ubiquitin-conjugating enzyme E2-16 kDa OS=S...    30   3.8  
sp|P52490|UBC13_YEAST Ubiquitin-conjugating enzyme E2 13 OS=Sacc...    30   3.8  
sp|Q9M3D6|WBC19_ARATH White-brown complex homolog protein 19 OS=...    29   8.4  
sp|Q2IIC2|MDH1_ANADE Malate dehydrogenase 1 OS=Anaeromyxobacter ...    29   8.4  

>sp|Q9FZ48|UBC36_ARATH Ubiquitin carrier protein E2 36
           OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1
          Length = 153

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYAS 76
           IAKHWK+NEAEAVETAKEWTRLYAS
Sbjct: 127 IAKHWKSNEAEAVETAKEWTRLYAS 151


>sp|Q94A97|UBC35_ARATH Ubiquitin carrier protein E2 35
           OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1
          Length = 153

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 23/25 (92%), Positives = 25/25 (100%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYAS 76
           IAKHWK+NEAEAV+TAKEWTRLYAS
Sbjct: 127 IAKHWKSNEAEAVDTAKEWTRLYAS 151


>sp|Q86K32|UBE2N_DICDI Probable ubiquitin-conjugating enzyme E2 N
           OS=Dictyostelium discoideum GN=ube2n PE=3 SV=1
          Length = 139

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYASA 79
           +A+HWKTNE EA+  A+EWTRLYA A
Sbjct: 110 VAEHWKTNEKEAMARAREWTRLYAEA 135


>sp|Q5R7J6|UBE2N_PONAB Ubiquitin-conjugating enzyme E2 N OS=Pongo
           abelii GN=UBE2N PE=2 SV=1
          Length = 152

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 17/24 (70%), Positives = 22/24 (91%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYA 73
           +A+ WKTNEA+A+ETA+ WTRLYA
Sbjct: 125 VAEQWKTNEAQAIETARAWTRLYA 148


>sp|P61089|UBE2N_MOUSE Ubiquitin-conjugating enzyme E2 N OS=Mus
           musculus GN=Ube2n PE=1 SV=1
          Length = 152

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 17/24 (70%), Positives = 22/24 (91%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYA 73
           +A+ WKTNEA+A+ETA+ WTRLYA
Sbjct: 125 VAEQWKTNEAQAIETARAWTRLYA 148


>sp|Q4R4I1|UBE2N_MACFA Ubiquitin-conjugating enzyme E2 N OS=Macaca
           fascicularis GN=UBE2N PE=2 SV=1
          Length = 152

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 17/24 (70%), Positives = 22/24 (91%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYA 73
           +A+ WKTNEA+A+ETA+ WTRLYA
Sbjct: 125 VAEQWKTNEAQAIETARAWTRLYA 148


>sp|P61088|UBE2N_HUMAN Ubiquitin-conjugating enzyme E2 N OS=Homo
           sapiens GN=UBE2N PE=1 SV=1
          Length = 152

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 17/24 (70%), Positives = 22/24 (91%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYA 73
           +A+ WKTNEA+A+ETA+ WTRLYA
Sbjct: 125 VAEQWKTNEAQAIETARAWTRLYA 148


>sp|Q0P5K3|UBE2N_BOVIN Ubiquitin-conjugating enzyme E2 N OS=Bos
           taurus GN=UBE2N PE=2 SV=1
          Length = 152

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 17/24 (70%), Positives = 22/24 (91%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYA 73
           +A+ WKTNEA+A+ETA+ WTRLYA
Sbjct: 125 VAEQWKTNEAQAIETARAWTRLYA 148


>sp|Q5JXB2|UE2NL_HUMAN Putative ubiquitin-conjugating enzyme E2
           N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1
          Length = 153

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYA 73
           + + WKTNEA+A+ETA+ WTRLYA
Sbjct: 126 VVEQWKTNEAQAIETARAWTRLYA 149


>sp|Q9EQX9|UBE2N_RAT Ubiquitin-conjugating enzyme E2 N OS=Rattus
           norvegicus GN=Ube2n PE=1 SV=1
          Length = 152

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 16/24 (66%), Positives = 22/24 (91%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYA 73
           +A+ WK+NEA+A+ETA+ WTRLYA
Sbjct: 125 VAEQWKSNEAQAIETARAWTRLYA 148
tr_hit_id B3TLW5
Definition tr|B3TLW5|B3TLW5_ELAGV Ubiquitin-conjugating enzyme 1 OS=Elaeis guineensis var. tenera
Align length 25
Score (bit) 56.2
E-value 8.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946419|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_J02, 5'
         (334 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3TLW5|B3TLW5_ELAGV Ubiquitin-conjugating enzyme 1 OS=Elaeis ...    56   8e-07
tr|A9PBY5|A9PBY5_POPTR Ubiquitin carrier protein OS=Populus tric...    56   8e-07
tr|A9NUN0|A9NUN0_PICSI Ubiquitin carrier protein OS=Picea sitche...    56   8e-07
tr|A7P1Z0|A7P1Z0_VITVI Ubiquitin carrier protein OS=Vitis vinife...    56   8e-07
tr|Q45W77|Q45W77_ARAHY Ubiquitin carrier protein OS=Arachis hypo...    55   2e-06
tr|Q06H20|Q06H20_ARAHY Ubiquitin carrier protein OS=Arachis hypo...    55   2e-06
tr|B7FMQ3|B7FMQ3_MEDTR Putative uncharacterized protein OS=Medic...    55   2e-06
tr|A9PA76|A9PA76_POPTR Ubiquitin carrier protein OS=Populus tric...    55   2e-06
tr|A9NNB1|A9NNB1_PICSI Ubiquitin carrier protein OS=Picea sitche...    55   2e-06
tr|A7PJG9|A7PJG9_VITVI Chromosome chr12 scaffold_18, whole genom...    55   2e-06
tr|Q8W0I1|Q8W0I1_ORYSJ Ubiquitin carrier protein OS=Oryza sativa...    54   3e-06
tr|B8A797|B8A797_ORYSI Putative uncharacterized protein OS=Oryza...    54   3e-06
tr|A2ZWF9|A2ZWF9_ORYSJ Putative uncharacterized protein OS=Oryza...    54   3e-06
tr|Q9XHP3|Q9XHP3_CATRO Ubiquitin carrier protein OS=Catharanthus...    54   5e-06
tr|Q9SEA9|Q9SEA9_MESCR Ubiquitin carrier protein (Fragment) OS=M...    54   5e-06
tr|B6T1X2|B6T1X2_MAIZE Ubiquitin-conjugating enzyme E2 N OS=Zea ...    53   7e-06
tr|A9TIG8|A9TIG8_PHYPA Ubiquitin carrier protein OS=Physcomitrel...    53   7e-06
tr|B6TFR0|B6TFR0_MAIZE Putative uncharacterized protein OS=Zea m...    53   9e-06
tr|B6SIC6|B6SIC6_MAIZE Ubiquitin-conjugating enzyme E2 N OS=Zea ...    53   9e-06
tr|B4FPA1|B4FPA1_MAIZE Putative uncharacterized protein OS=Zea m...    53   9e-06
tr|B4FCU7|B4FCU7_MAIZE Putative uncharacterized protein OS=Zea m...    53   9e-06
tr|A9SCM3|A9SCM3_PHYPA Ubiquitin carrier protein OS=Physcomitrel...    49   1e-04
tr|B0M0P7|B0M0P7_DICDI Ubiquitin carrier protein OS=Dictyosteliu...    45   0.001
tr|Q803J2|Q803J2_DANRE Ubiquitin carrier protein OS=Danio rerio ...    45   0.002
tr|Q7SZ88|Q7SZ88_XENLA Ubiquitin carrier protein OS=Xenopus laev...    45   0.002
tr|Q5F405|Q5F405_CHICK Ubiquitin carrier protein OS=Gallus gallu...    45   0.002
tr|B5G4T1|B5G4T1_TAEGU Putative ubiquitin-conjugating enzyme E2N...    45   0.002
tr|B5G4T0|B5G4T0_TAEGU Putative ubiquitin-conjugating enzyme E2N...    45   0.002
tr|A2RTT4|A2RTT4_MOUSE Ubiquitin carrier protein OS=Mus musculus...    45   0.002
tr|A5D987|A5D987_BOVIN Ubiquitin carrier protein OS=Bos taurus G...    45   0.002

>tr|B3TLW5|B3TLW5_ELAGV Ubiquitin-conjugating enzyme 1 OS=Elaeis
           guineensis var. tenera PE=2 SV=1
          Length = 153

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYAS 76
           IAKHWKTNEAEAVETAKEWTRLYAS
Sbjct: 127 IAKHWKTNEAEAVETAKEWTRLYAS 151


>tr|A9PBY5|A9PBY5_POPTR Ubiquitin carrier protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 153

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYAS 76
           IAKHWKTNEAEAVETAKEWTRLYAS
Sbjct: 127 IAKHWKTNEAEAVETAKEWTRLYAS 151


>tr|A9NUN0|A9NUN0_PICSI Ubiquitin carrier protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 153

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYAS 76
           IAKHWKTNEAEAVETAKEWTRLYAS
Sbjct: 127 IAKHWKTNEAEAVETAKEWTRLYAS 151


>tr|A7P1Z0|A7P1Z0_VITVI Ubiquitin carrier protein OS=Vitis vinifera
           GN=GSVIVT00027804001 PE=3 SV=1
          Length = 153

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYAS 76
           IAKHWKTNEAEAVETAKEWTRLYAS
Sbjct: 127 IAKHWKTNEAEAVETAKEWTRLYAS 151


>tr|Q45W77|Q45W77_ARAHY Ubiquitin carrier protein OS=Arachis
           hypogaea PE=2 SV=1
          Length = 153

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYAS 76
           IAKHWK+NEAEAVETAKEWTRLYAS
Sbjct: 127 IAKHWKSNEAEAVETAKEWTRLYAS 151


>tr|Q06H20|Q06H20_ARAHY Ubiquitin carrier protein OS=Arachis
           hypogaea PE=2 SV=1
          Length = 153

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYAS 76
           IAKHWK+NEAEAVETAKEWTRLYAS
Sbjct: 127 IAKHWKSNEAEAVETAKEWTRLYAS 151


>tr|B7FMQ3|B7FMQ3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 153

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYAS 76
           IAKHWK+NEAEAVETAKEWTRLYAS
Sbjct: 127 IAKHWKSNEAEAVETAKEWTRLYAS 151


>tr|A9PA76|A9PA76_POPTR Ubiquitin carrier protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 153

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYAS 76
           IAKHWKTNE EAVETAKEWTRLYAS
Sbjct: 127 IAKHWKTNEVEAVETAKEWTRLYAS 151


>tr|A9NNB1|A9NNB1_PICSI Ubiquitin carrier protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 153

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYAS 76
           IAKHWKTNE EAVETAKEWTRLYAS
Sbjct: 127 IAKHWKTNEVEAVETAKEWTRLYAS 151


>tr|A7PJG9|A7PJG9_VITVI Chromosome chr12 scaffold_18, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018730001
           PE=3 SV=1
          Length = 141

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = +2

Query: 2   IAKHWKTNEAEAVETAKEWTRLYAS 76
           IAKHWK+NEAEAVETAKEWTRLYAS
Sbjct: 115 IAKHWKSNEAEAVETAKEWTRLYAS 139