DK946421
Clone id YMU02A01NGRL0012_J04
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_J04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAGTTAACTGAAAGAAAAAAACTTTATCTTCGCAGAAAA
CATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCAT
TCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAAC
ACTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGT
CTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGG
AATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCT
CGTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAA
ATAAAGAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 31.2
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946421|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_J04, 5'
(467 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 31 2.3
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 31 3.1
sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus ... 30 5.2
sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens ... 30 5.2
sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN... 30 5.2
sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegic... 30 6.8

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
Length = 455

Score = 31.2 bits (69), Expect = 2.3
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Frame = +2

Query: 248 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 394
L+ T+ +++KE+N+W+++ D + RI ++ K GIN SGF+ ++E
Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
burgdorferi GN=recB PE=3 SV=1
Length = 1169

Score = 30.8 bits (68), Expect = 3.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2

Query: 218 IVLVPQETLGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 382
IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
GN=Mmp2 PE=2 SV=1
Length = 662

Score = 30.0 bits (66), Expect = 5.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2

Query: 145 WRNNKKTHVFCEDKVFFFQLT*PRYDPSTIKITARRVTLLPLN 17
W NKKT++F DK + + + DP K+ A +P N
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens
GN=MMP2 PE=1 SV=2
Length = 660

Score = 30.0 bits (66), Expect = 5.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2

Query: 145 WRNNKKTHVFCEDKVFFFQLT*PRYDPSTIKITARRVTLLPLN 17
W NKKT++F DK + + + DP K+ A +P N
Sbjct: 574 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 616


>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus
GN=MMP2 PE=2 SV=1
Length = 661

Score = 30.0 bits (66), Expect = 5.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2

Query: 145 WRNNKKTHVFCEDKVFFFQLT*PRYDPSTIKITARRVTLLPLN 17
W NKKT++F DK + + + DP K+ A +P N
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 617


>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus
GN=Mmp2 PE=2 SV=2
Length = 662

Score = 29.6 bits (65), Expect = 6.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2

Query: 145 WRNNKKTHVFCEDKVFFFQLT*PRYDPSTIKITARRVTLLPLN 17
W NKKT++F DK + + + DP K+ A +P N
Sbjct: 576 WSKNKKTYIFSGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946421|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_J04, 5'
(467 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******