DK946428 |
Clone id |
YMU02A01NGRL0012_J16 |
Library |
YMU02 |
Length |
426 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_J16. 5' end sequence. |
Accession |
DK946428 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL251Contig1 |
Sequence |
GACAGAGGAGCATTTTGCGAGGGCTGTGTTGGCGCACGCGAGAAGTACGGCTGGGAGCAG AGGGGGGGCTGCTTCTCCTACTTGCAATGTTGCAGACGAGATCTTTCGCGTGGTGCCCAT CATGAGTGGCCTTGTGCTCATTGGCATCGCTCTTGGCTTTGTCCTCCTCCGAGTTGAGGC TGCTCTTGAGGAATCTGAGTAAATTGAACCCTCTTCCTCTCTGACCCTACCTGCATTTCT TGTCATAATTTGTAATTCCATGAAAATGTAATCAGTTCTTTTGTGAATGTGCTCACATGT ATAATGTATTTGCAACCCGCGAGAGTGCGAGGTAATGTCTCTGTGTATATGCTTCTTGCG GCTAATGGACTGGTGGTGTCAATTTTTTGGCTTTTCCAAAAAAAAAAAAAAAAAAAAAAA AAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P80883 |
Definition |
sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea |
Align length |
34 |
Score (bit) |
48.1 |
E-value |
1.0e-05 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TM48 |
Definition |
tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
35 |
Score (bit) |
60.5 |
E-value |
4.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946428|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_J16, 5' (397 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella paten... 60 4e-08 tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella paten... 60 4e-08 tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea... 58 3e-07 tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subs... 55 2e-06 tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza... 55 2e-06 tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome ... 55 2e-06 tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis... 55 2e-06 tr|B7FM90|B7FM90_MEDTR Putative uncharacterized protein OS=Medic... 54 4e-06 tr|A7NTN4|A7NTN4_VITVI Chromosome chr18 scaffold_1, whole genome... 52 1e-05 tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Popul... 50 6e-05 tr|B6SRD7|B6SRD7_MAIZE Plastoquinol-plastocyanin reductase OS=Ze... 50 7e-05 tr|B6TLU8|B6TLU8_MAIZE Plastoquinol-plastocyanin reductase OS=Ze... 49 1e-04 tr|Q9SZY6|Q9SZY6_ARATH Cytochrome b6f complex subunit OS=Arabido... 48 3e-04 tr|O48717|O48717_ARATH Expressed protein (Putative uncharacteriz... 48 3e-04 tr|Q9M5M4|Q9M5M4_EUPES Putative uncharacterized protein OS=Eupho... 39 0.098 tr|Q55JK0|Q55JK0_CRYNE Putative uncharacterized protein OS=Crypt... 37 0.64 tr|Q9XFU3|Q9XFU3_9CHLO Putative uncharacterized protein OS=Chlam... 34 3.2 tr|Q7XYX4|Q7XYX4_LOPEL High-molecular-weight glutenin x-type sub... 34 4.1 tr|Q7XYT9|Q7XYT9_LOPEL High-molecular-weight glutenin x-type sub... 34 4.1 tr|A2TJ27|A2TJ27_LOPEL HMW-GS x-type OS=Lophopyrum elongatum GN=... 34 4.1 tr|Q67W94|Q67W94_ORYSJ Putative uncharacterized protein P0460H04... 33 5.4 tr|B6LVT9|B6LVT9_BRAFL Putative uncharacterized protein OS=Branc... 33 5.4 tr|Q7Y0K2|Q7Y0K2_LOPEL X-type HMW glutenin subunit Ee2.1 OS=Loph... 33 5.4 tr|Q19A59|Q19A59_LOPEL High molecular weight glutenin x-type sub... 33 5.4 tr|Q5KA01|Q5KA01_CRYNE Ubiquitin-specific protease, putative OS=... 33 5.4 tr|Q0ZB32|Q0ZB32_9POAL High molecular weight glutenin x subunit ... 33 7.1
>tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_147622 PE=4 SV=1 Length = 90
Score = 60.5 bits (145), Expect = 4e-08 Identities = 28/35 (80%), Positives = 33/35 (94%) Frame = +2
Query: 83 CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187 C+VA EIFR+VPIMSGL L+GIA+GFVLLRVEAA+ Sbjct: 52 CDVASEIFRIVPIMSGLTLVGIAIGFVLLRVEAAV 86
>tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_115764 PE=4 SV=1 Length = 112
Score = 60.5 bits (145), Expect = 4e-08 Identities = 28/35 (80%), Positives = 33/35 (94%) Frame = +2
Query: 83 CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187 C+VA EIFR+VPIMSGL L+GIA+GFVLLRVEAA+ Sbjct: 74 CDVASEIFRIVPIMSGLTLVGIAIGFVLLRVEAAV 108
>tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 129
Score = 57.8 bits (138), Expect = 3e-07 Identities = 28/36 (77%), Positives = 32/36 (88%) Frame = +2
Query: 80 TCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187 TCNVA EI +VPIMS LVLIG+A+GFVLLRVEAA+ Sbjct: 89 TCNVASEIATIVPIMSALVLIGVAVGFVLLRVEAAV 124
>tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0079B15.15 PE=4 SV=1 Length = 118
Score = 55.1 bits (131), Expect = 2e-06 Identities = 25/35 (71%), Positives = 31/35 (88%) Frame = +2
Query: 83 CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187 CN A EIFR+ IM+GLVL+G+A+GFVLLRVEAA+ Sbjct: 80 CNAAGEIFRIAVIMNGLVLVGVAVGFVLLRVEAAV 114
>tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_13659 PE=4 SV=1 Length = 118
Score = 55.1 bits (131), Expect = 2e-06 Identities = 25/35 (71%), Positives = 31/35 (88%) Frame = +2
Query: 83 CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187 CN A EIFR+ IM+GLVL+G+A+GFVLLRVEAA+ Sbjct: 80 CNAAGEIFRIAVIMNGLVLVGVAVGFVLLRVEAAV 114
>tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036487001 PE=4 SV=1 Length = 201
Score = 54.7 bits (130), Expect = 2e-06 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Frame = +2
Query: 2 TEEHFARAV--LXXXXXXXXXXXXXXXPTCNVADEIFRVVPIMSGLVLIGIALGFVLLRV 175 TE+ FA+ V L TCN EIFR+ IM+GLVL+G+A+GFVLLR+ Sbjct: 134 TEQSFAKIVGSLKSPSQGKGRGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRI 193
Query: 176 EAAL 187 EA++ Sbjct: 194 EASV 197
>tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027615 PE=4 SV=1 Length = 126
Score = 54.7 bits (130), Expect = 2e-06 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%) Frame = +2
Query: 2 TEEHFARAV--LXXXXXXXXXXXXXXXPTCNVADEIFRVVPIMSGLVLIGIALGFVLLRV 175 TE+ FA+ V L TCN EIFR+ IM+GLVL+G+A+GFVLLR+ Sbjct: 59 TEQSFAKIVXSLKSXSQGKGRGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRI 118
Query: 176 EAAL 187 EA++ Sbjct: 119 EASV 122
>tr|B7FM90|B7FM90_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 127
Score = 53.9 bits (128), Expect = 4e-06 Identities = 23/36 (63%), Positives = 31/36 (86%) Frame = +2
Query: 80 TCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187 TCN A EIF++ IM+GL L+G+A+GFVLLR+EAA+ Sbjct: 88 TCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRIEAAV 123
>tr|A7NTN4|A7NTN4_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00014735001 PE=4 SV=1 Length = 122
Score = 52.4 bits (124), Expect = 1e-05 Identities = 23/36 (63%), Positives = 31/36 (86%) Frame = +2
Query: 80 TCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187 TC+ A EIFR+ IM+ LVLIG+A+GFVLLR+EA++ Sbjct: 83 TCSAASEIFRIAAIMNALVLIGVAVGFVLLRIEASV 118
>tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 122
Score = 50.1 bits (118), Expect = 6e-05 Identities = 21/34 (61%), Positives = 29/34 (85%) Frame = +2
Query: 80 TCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEA 181 TC+ EIFR+ +M+GLVL+G+A+GFVLLR+EA Sbjct: 83 TCSNVGEIFRIAAVMNGLVLVGVAVGFVLLRIEA 116
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