DK946428
Clone id YMU02A01NGRL0012_J16
Library
Length 426
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_J16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GACAGAGGAGCATTTTGCGAGGGCTGTGTTGGCGCACGCGAGAAGTACGGCTGGGAGCAG
AGGGGGGGCTGCTTCTCCTACTTGCAATGTTGCAGACGAGATCTTTCGCGTGGTGCCCAT
CATGAGTGGCCTTGTGCTCATTGGCATCGCTCTTGGCTTTGTCCTCCTCCGAGTTGAGGC
TGCTCTTGAGGAATCTGAGTAAATTGAACCCTCTTCCTCTCTGACCCTACCTGCATTTCT
TGTCATAATTTGTAATTCCATGAAAATGTAATCAGTTCTTTTGTGAATGTGCTCACATGT
ATAATGTATTTGCAACCCGCGAGAGTGCGAGGTAATGTCTCTGTGTATATGCTTCTTGCG
GCTAATGGACTGGTGGTGTCAATTTTTTGGCTTTTCCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
■■Homology search results ■■ -
sp_hit_id P80883
Definition sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea
Align length 34
Score (bit) 48.1
E-value 1.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946428|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_J16, 5'
(397 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment... 48 1e-05
sp|Q42496|PETM_CHLRE Cytochrome b6-f complex subunit 7, chloropl... 32 0.98
sp|Q4G3B3|PETM_EMIHU Cytochrome b6-f complex subunit 7 OS=Emilia... 32 1.3
sp|Q641X3|HEXA_RAT Beta-hexosaminidase subunit alpha OS=Rattus n... 32 1.3
sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subuni... 30 2.9
sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Hom... 30 2.9
sp|Q5RC84|HEXA_PONAB Beta-hexosaminidase subunit alpha OS=Pongo ... 30 3.7
sp|P06865|HEXA_HUMAN Beta-hexosaminidase subunit alpha OS=Homo s... 30 3.7
sp|Q3TYX3|SMYD5_MOUSE SET and MYND domain-containing protein 5 O... 30 4.9
sp|Q6GMV2|SMYD5_HUMAN SET and MYND domain-containing protein 5 O... 30 4.9
sp|Q8DJ15|PETM_THEEB Cytochrome b6-f complex subunit 7 OS=Thermo... 30 4.9
sp|P48366|PETM_CYAPA Cytochrome b6-f complex subunit 7 OS=Cyanop... 30 4.9
sp|B0C6T5|PETM_ACAM1 Cytochrome b6-f complex subunit 7 OS=Acaryo... 30 4.9
sp|P29416|HEXA_MOUSE Beta-hexosaminidase subunit alpha OS=Mus mu... 30 4.9
sp|Q2JS99|PETM_SYNJA Cytochrome b6-f complex subunit 7 OS=Synech... 29 6.4
sp|Q1XDL1|PETM_PORYE Cytochrome b6-f complex subunit 7 OS=Porphy... 29 6.4
sp|Q9TLR5|PETM_CYACA Cytochrome b6-f complex subunit 7 OS=Cyanid... 29 8.3
sp|Q5R880|PLA2R_PONAB Secretory phospholipase A2 receptor OS=Pon... 29 8.3
sp|P08488|GLT3_WHEAT Glutenin, high molecular weight subunit 12 ... 29 8.3

>sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment)
OS=Spinacia oleracea GN=petM PE=1 SV=1
Length = 36

Score = 48.1 bits (113), Expect = 1e-05
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = +2

Query: 86 NVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187
N A EIFR+ +M+GL L+G+A+GFVLLR+EA +
Sbjct: 1 NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATV 34


>sp|Q42496|PETM_CHLRE Cytochrome b6-f complex subunit 7,
chloroplastic OS=Chlamydomonas reinhardtii GN=petM PE=1
SV=1
Length = 99

Score = 32.0 bits (71), Expect = 0.98
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +2

Query: 122 MSGLVLIGIALGFVLLRVEA 181
M G+ L+G+A+GFVLLRVE+
Sbjct: 73 MVGMTLVGLAIGFVLLRVES 92


>sp|Q4G3B3|PETM_EMIHU Cytochrome b6-f complex subunit 7 OS=Emiliania
huxleyi GN=petM PE=3 SV=1
Length = 32

Score = 31.6 bits (70), Expect = 1.3
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +2

Query: 89 VADEIFRVVPIMSGLVLIGIALGFVLLRVE 178
+A EIF V +M LVL G+++GF LL+++
Sbjct: 1 MAKEIFTVAGVMWALVLTGLSVGFGLLKIQ 30


>sp|Q641X3|HEXA_RAT Beta-hexosaminidase subunit alpha OS=Rattus
norvegicus GN=Hexa PE=2 SV=1
Length = 528

Score = 31.6 bits (70), Expect = 1.3
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1

Query: 346 TQRHYLALSRVANTLYM*AHSQKN*LHFH 260
T RHYL LS + NTL + A+++ N H+H
Sbjct: 176 TSRHYLPLSSILNTLDVMAYNKFNVFHWH 204


>sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subunit
SNF5 OS=Saccharomyces cerevisiae GN=SNF5 PE=1 SV=2
Length = 905

Score = 30.4 bits (67), Expect = 2.9
Identities = 23/79 (29%), Positives = 34/79 (43%)
Frame = -3

Query: 242 QEMQVGSERKRVQFTQIPQEQPQLGGGQSQERCQ*AQGHS*WAPRERSRLQHCK*EKQPP 63
Q+ Q ++++ Q Q Q+Q Q Q Q++ Q QG P+ + Q QPP
Sbjct: 232 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGQ---IPQSQQVPQVRSMSGQPP 288

Query: 62 LCSQPYFSRAPTQPSQNAP 6
QP + P P N P
Sbjct: 289 TNVQPTIGQLPQLPKLNLP 307


>sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Homo
sapiens GN=PLA2R1 PE=1 SV=2
Length = 1463

Score = 30.4 bits (67), Expect = 2.9
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = -3

Query: 230 VGSERKRVQFTQIPQEQPQLGGGQSQERCQ*AQGHS*WAPRERSRLQHCK*EKQPPLCSQ 51
VG + + VQ+T QP+ GG C +G P R ++HC+ K LC Q
Sbjct: 594 VGQKPEPVQYTHWNTHQPRYSGG-----CVAMRGRH---PLGRWEVKHCRHFKAMSLCKQ 645

Query: 50 PYFSRAPTQPSQNAP 6
P ++ + + P
Sbjct: 646 PVENQEKAEYEERWP 660


>sp|Q5RC84|HEXA_PONAB Beta-hexosaminidase subunit alpha OS=Pongo
abelii GN=HEXA PE=3 SV=1
Length = 529

Score = 30.0 bits (66), Expect = 3.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1

Query: 346 TQRHYLALSRVANTLYM*AHSQKN*LHFH 260
T RHYL LS + +TL + A+++ N H+H
Sbjct: 176 TSRHYLPLSSILDTLDVMAYNKLNVFHWH 204


>sp|P06865|HEXA_HUMAN Beta-hexosaminidase subunit alpha OS=Homo
sapiens GN=HEXA PE=1 SV=1
Length = 529

Score = 30.0 bits (66), Expect = 3.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1

Query: 346 TQRHYLALSRVANTLYM*AHSQKN*LHFH 260
T RHYL LS + +TL + A+++ N H+H
Sbjct: 176 TSRHYLPLSSILDTLDVMAYNKLNVFHWH 204


>sp|Q3TYX3|SMYD5_MOUSE SET and MYND domain-containing protein 5
OS=Mus musculus GN=Smyd5 PE=2 SV=2
Length = 416

Score = 29.6 bits (65), Expect = 4.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1

Query: 70 CFSYLQCCRRDLSRGAHHE 126
C SYL CC+R+ SR + H+
Sbjct: 347 CISYLDCCQRERSRHSRHK 365


>sp|Q6GMV2|SMYD5_HUMAN SET and MYND domain-containing protein 5
OS=Homo sapiens GN=SMYD5 PE=1 SV=2
Length = 418

Score = 29.6 bits (65), Expect = 4.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1

Query: 70 CFSYLQCCRRDLSRGAHHE 126
C SYL CC+R+ SR + H+
Sbjct: 348 CISYLDCCQRERSRHSRHK 366


tr_hit_id A9TM48
Definition tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 35
Score (bit) 60.5
E-value 4.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946428|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_J16, 5'
(397 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella paten... 60 4e-08
tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella paten... 60 4e-08
tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea... 58 3e-07
tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subs... 55 2e-06
tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza... 55 2e-06
tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome ... 55 2e-06
tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis... 55 2e-06
tr|B7FM90|B7FM90_MEDTR Putative uncharacterized protein OS=Medic... 54 4e-06
tr|A7NTN4|A7NTN4_VITVI Chromosome chr18 scaffold_1, whole genome... 52 1e-05
tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Popul... 50 6e-05
tr|B6SRD7|B6SRD7_MAIZE Plastoquinol-plastocyanin reductase OS=Ze... 50 7e-05
tr|B6TLU8|B6TLU8_MAIZE Plastoquinol-plastocyanin reductase OS=Ze... 49 1e-04
tr|Q9SZY6|Q9SZY6_ARATH Cytochrome b6f complex subunit OS=Arabido... 48 3e-04
tr|O48717|O48717_ARATH Expressed protein (Putative uncharacteriz... 48 3e-04
tr|Q9M5M4|Q9M5M4_EUPES Putative uncharacterized protein OS=Eupho... 39 0.098
tr|Q55JK0|Q55JK0_CRYNE Putative uncharacterized protein OS=Crypt... 37 0.64
tr|Q9XFU3|Q9XFU3_9CHLO Putative uncharacterized protein OS=Chlam... 34 3.2
tr|Q7XYX4|Q7XYX4_LOPEL High-molecular-weight glutenin x-type sub... 34 4.1
tr|Q7XYT9|Q7XYT9_LOPEL High-molecular-weight glutenin x-type sub... 34 4.1
tr|A2TJ27|A2TJ27_LOPEL HMW-GS x-type OS=Lophopyrum elongatum GN=... 34 4.1
tr|Q67W94|Q67W94_ORYSJ Putative uncharacterized protein P0460H04... 33 5.4
tr|B6LVT9|B6LVT9_BRAFL Putative uncharacterized protein OS=Branc... 33 5.4
tr|Q7Y0K2|Q7Y0K2_LOPEL X-type HMW glutenin subunit Ee2.1 OS=Loph... 33 5.4
tr|Q19A59|Q19A59_LOPEL High molecular weight glutenin x-type sub... 33 5.4
tr|Q5KA01|Q5KA01_CRYNE Ubiquitin-specific protease, putative OS=... 33 5.4
tr|Q0ZB32|Q0ZB32_9POAL High molecular weight glutenin x subunit ... 33 7.1

>tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_147622 PE=4 SV=1
Length = 90

Score = 60.5 bits (145), Expect = 4e-08
Identities = 28/35 (80%), Positives = 33/35 (94%)
Frame = +2

Query: 83 CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187
C+VA EIFR+VPIMSGL L+GIA+GFVLLRVEAA+
Sbjct: 52 CDVASEIFRIVPIMSGLTLVGIAIGFVLLRVEAAV 86


>tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_115764 PE=4 SV=1
Length = 112

Score = 60.5 bits (145), Expect = 4e-08
Identities = 28/35 (80%), Positives = 33/35 (94%)
Frame = +2

Query: 83 CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187
C+VA EIFR+VPIMSGL L+GIA+GFVLLRVEAA+
Sbjct: 74 CDVASEIFRIVPIMSGLTLVGIAIGFVLLRVEAAV 108


>tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 129

Score = 57.8 bits (138), Expect = 3e-07
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +2

Query: 80 TCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187
TCNVA EI +VPIMS LVLIG+A+GFVLLRVEAA+
Sbjct: 89 TCNVASEIATIVPIMSALVLIGVAVGFVLLRVEAAV 124


>tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0079B15.15 PE=4 SV=1
Length = 118

Score = 55.1 bits (131), Expect = 2e-06
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +2

Query: 83 CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187
CN A EIFR+ IM+GLVL+G+A+GFVLLRVEAA+
Sbjct: 80 CNAAGEIFRIAVIMNGLVLVGVAVGFVLLRVEAAV 114


>tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_13659 PE=4 SV=1
Length = 118

Score = 55.1 bits (131), Expect = 2e-06
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +2

Query: 83 CNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187
CN A EIFR+ IM+GLVL+G+A+GFVLLRVEAA+
Sbjct: 80 CNAAGEIFRIAVIMNGLVLVGVAVGFVLLRVEAAV 114


>tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00036487001
PE=4 SV=1
Length = 201

Score = 54.7 bits (130), Expect = 2e-06
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +2

Query: 2 TEEHFARAV--LXXXXXXXXXXXXXXXPTCNVADEIFRVVPIMSGLVLIGIALGFVLLRV 175
TE+ FA+ V L TCN EIFR+ IM+GLVL+G+A+GFVLLR+
Sbjct: 134 TEQSFAKIVGSLKSPSQGKGRGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRI 193

Query: 176 EAAL 187
EA++
Sbjct: 194 EASV 197


>tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_027615 PE=4 SV=1
Length = 126

Score = 54.7 bits (130), Expect = 2e-06
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Frame = +2

Query: 2 TEEHFARAV--LXXXXXXXXXXXXXXXPTCNVADEIFRVVPIMSGLVLIGIALGFVLLRV 175
TE+ FA+ V L TCN EIFR+ IM+GLVL+G+A+GFVLLR+
Sbjct: 59 TEQSFAKIVXSLKSXSQGKGRGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRI 118

Query: 176 EAAL 187
EA++
Sbjct: 119 EASV 122


>tr|B7FM90|B7FM90_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 127

Score = 53.9 bits (128), Expect = 4e-06
Identities = 23/36 (63%), Positives = 31/36 (86%)
Frame = +2

Query: 80 TCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187
TCN A EIF++ IM+GL L+G+A+GFVLLR+EAA+
Sbjct: 88 TCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRIEAAV 123


>tr|A7NTN4|A7NTN4_VITVI Chromosome chr18 scaffold_1, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00014735001
PE=4 SV=1
Length = 122

Score = 52.4 bits (124), Expect = 1e-05
Identities = 23/36 (63%), Positives = 31/36 (86%)
Frame = +2

Query: 80 TCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 187
TC+ A EIFR+ IM+ LVLIG+A+GFVLLR+EA++
Sbjct: 83 TCSAASEIFRIAAIMNALVLIGVAVGFVLLRIEASV 118


>tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 122

Score = 50.1 bits (118), Expect = 6e-05
Identities = 21/34 (61%), Positives = 29/34 (85%)
Frame = +2

Query: 80 TCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEA 181
TC+ EIFR+ +M+GLVL+G+A+GFVLLR+EA
Sbjct: 83 TCSNVGEIFRIAAVMNGLVLVGVAVGFVLLRIEA 116