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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946429
Clone id YMU02A01NGRL0012_J17
Library
Length 241
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_J17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCATGATTCAAAAATCAAGTTTCCCCTGATTTTCCGTAAGATCCGCCCTCCCACAAGGAA
GCTCAAGACCACATACAAGGCAAGCAGGCCTAACACTTTTGTTTAGAAATTATGCAGTTT
TGGTCAAATTTACTGCACTACTACCGACGCACCTCTTTGAAAGAGATTTTGATTTTGAGA
ATTATGCAAAATGAATATGTTTGCTTGCGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
■■Homology search results ■■ -
sp_hit_id Q9LUD4
Definition sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsis thaliana
Align length 34
Score (bit) 64.7
E-value 1.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946429|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_J17, 5'
         (211 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsi...    65   1e-10
sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsi...    64   3e-10
sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa...    62   1e-09
sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sat...    60   3e-09
sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyosteliu...    37   0.040
sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegi...    35   0.15 
sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus...    35   0.15 
sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens...    35   0.15 
sp|Q7ZWJ4|RL18A_DANRE 60S ribosomal protein L18a OS=Danio rerio ...    35   0.15 
sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus G...    35   0.15 
sp|O57561|RL18A_SALSA 60S ribosomal protein L18a OS=Salmo salar ...    33   0.58 
sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a OS=Ictalurus pu...    32   0.98 
sp|Q57954|Y534_METJA Uncharacterized protein MJ0534 OS=Methanoca...    30   4.9  
sp|P41093|RL18A_DROME 60S ribosomal protein L18a OS=Drosophila m...    29   8.3  
sp|P28006|GAC1_YEAST Serine/threonine-protein phosphatase 1 regu...    29   8.3  

>sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsis
           thaliana GN=RPL18AC PE=2 SV=1
          Length = 178

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 27/34 (79%), Positives = 33/34 (97%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           H+SKIKFPL+FRK+RPP+RKLKTTYKAS+PN F+
Sbjct: 145 HNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178


>sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis
           thaliana GN=RPL18AB PE=2 SV=2
          Length = 178

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 26/34 (76%), Positives = 33/34 (97%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           H+SKIKFPL+FRK+RPP+RKLKTTYKA++PN F+
Sbjct: 145 HNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178


>sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa
           subsp. japonica GN=RPL18A PE=2 SV=1
          Length = 178

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 26/34 (76%), Positives = 31/34 (91%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           H S IKFPL++RK+RPPTRKLKTT+KASRPN F+
Sbjct: 145 HKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178


>sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sativa
           GN=RPL18A PE=2 SV=1
          Length = 178

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 27/34 (79%), Positives = 31/34 (91%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           H+SKIKFPL+ RKIRPP+RKLKT YKASRPN F+
Sbjct: 145 HNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178


>sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyostelium
           discoideum GN=rpl18a PE=3 SV=2
          Length = 171

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 19/33 (57%), Positives = 22/33 (66%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 100
           HDSKIKFPL  R       K K+T+ A+RPNTF
Sbjct: 142 HDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169


>sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegicus
           GN=Rpl18a PE=2 SV=1
          Length = 176

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 100
           HDSKIKFPL  R +R   R+ K  +   RPNTF
Sbjct: 146 HDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175


>sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus
           GN=Rpl18a PE=2 SV=1
          Length = 176

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 100
           HDSKIKFPL  R +R   R+ K  +   RPNTF
Sbjct: 146 HDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175


>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens
           GN=RPL18A PE=1 SV=2
          Length = 176

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 100
           HDSKIKFPL  R +R   R+ K  +   RPNTF
Sbjct: 146 HDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175


>sp|Q7ZWJ4|RL18A_DANRE 60S ribosomal protein L18a OS=Danio rerio
           GN=rpl18a PE=2 SV=1
          Length = 176

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 100
           HDSKIKFPL  R +R   R+ K  +   RPNTF
Sbjct: 146 HDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175


>sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus
           GN=RPL18A PE=2 SV=1
          Length = 176

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTF 100
           HDSKIKFPL  R +R   R+ K  +   RPNTF
Sbjct: 146 HDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
tr_hit_id B3TLY0
Definition tr|B3TLY0|B3TLY0_ELAGV Ribosomal protein L18a OS=Elaeis guineensis var. tenera
Align length 34
Score (bit) 68.6
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946429|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_J17, 5'
         (211 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3TLY0|B3TLY0_ELAGV Ribosomal protein L18a OS=Elaeis guineens...    69   2e-10
tr|Q677B0|Q677B0_HYAOR Ribosomal protein L18A OS=Hyacinthus orie...    67   6e-10
tr|A9PDA8|A9PDA8_POPTR Putative uncharacterized protein OS=Popul...    66   8e-10
tr|A9P8B1|A9P8B1_POPTR Putative uncharacterized protein OS=Popul...    66   8e-10
tr|Q308A3|Q308A3_SOLTU Putative uncharacterized protein OS=Solan...    66   1e-09
tr|A7QQP0|A7QQP0_VITVI Chromosome undetermined scaffold_143, who...    66   1e-09
tr|A5AZG2|A5AZG2_VITVI Putative uncharacterized protein OS=Vitis...    66   1e-09
tr|A5AX91|A5AX91_VITVI Putative uncharacterized protein OS=Vitis...    66   1e-09
tr|B3TLR7|B3TLR7_ELAGV Ribosomal protein L18a OS=Elaeis guineens...    65   2e-09
tr|A9SFY4|A9SFY4_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|A9REV1|A9REV1_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|A9PBF7|A9PBF7_POPTR Putative uncharacterized protein OS=Popul...    65   2e-09
tr|A9PA10|A9PA10_POPTR Putative uncharacterized protein OS=Popul...    65   2e-09
tr|A9P8L2|A9P8L2_POPTR Putative uncharacterized protein OS=Popul...    65   2e-09
tr|A7QSI5|A7QSI5_VITVI Chromosome undetermined scaffold_160, who...    65   2e-09
tr|Q3HRW8|Q3HRW8_SOLTU Putative uncharacterized protein OS=Solan...    64   3e-09
tr|Q8L7K0|Q8L7K0_ARATH 60S ribosomal protein L18A, putative OS=A...    64   5e-09
tr|A9P0B9|A9P0B9_PICSI Putative uncharacterized protein OS=Picea...    64   5e-09
tr|A8MRF3|A8MRF3_ARATH Uncharacterized protein At1g29970.2 OS=Ar...    64   5e-09
tr|B4FZ04|B4FZ04_MAIZE Putative uncharacterized protein OS=Zea m...    63   7e-09
tr|B4FU90|B4FU90_MAIZE 60S ribosomal protein L18a OS=Zea mays PE...    63   7e-09
tr|B4F9R6|B4F9R6_MAIZE Putative uncharacterized protein OS=Zea m...    63   7e-09
tr|A9S8S7|A9S8S7_PHYPA Predicted protein OS=Physcomitrella paten...    63   7e-09
tr|Q6AUF5|Q6AUF5_ORYSJ Os05g0565000 protein OS=Oryza sativa subs...    63   9e-09
tr|Q308A6|Q308A6_SOLTU Putative uncharacterized protein OS=Solan...    63   9e-09
tr|A2Y7H9|A2Y7H9_ORYSI Putative uncharacterized protein OS=Oryza...    63   9e-09
tr|B6UE23|B6UE23_MAIZE 60S ribosomal protein L18a OS=Zea mays PE...    62   1e-08
tr|B6T1D8|B6T1D8_MAIZE 60S ribosomal protein L18a OS=Zea mays PE...    62   1e-08
tr|Q0JJA0|Q0JJA0_ORYSJ Os01g0752300 protein (Putative uncharacte...    62   2e-08
tr|A2WV44|A2WV44_ORYSI Putative uncharacterized protein OS=Oryza...    62   2e-08

>tr|B3TLY0|B3TLY0_ELAGV Ribosomal protein L18a OS=Elaeis guineensis
           var. tenera PE=2 SV=1
          Length = 178

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           HDSKIKFPL+F+KIRPPTRKLKTTYKASRPN F+
Sbjct: 145 HDSKIKFPLVFKKIRPPTRKLKTTYKASRPNLFM 178


>tr|Q677B0|Q677B0_HYAOR Ribosomal protein L18A OS=Hyacinthus
           orientalis GN=RPL18 PE=2 SV=1
          Length = 178

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 28/34 (82%), Positives = 33/34 (97%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           HDSKIKFPL+F+K+RPPTRKLKTT+KASRPN F+
Sbjct: 145 HDSKIKFPLVFKKVRPPTRKLKTTFKASRPNLFM 178


>tr|A9PDA8|A9PDA8_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 178

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 28/34 (82%), Positives = 33/34 (97%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           H+SKIKFPL+F+K+RPPTRKLKTTYKASRPN F+
Sbjct: 145 HNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178


>tr|A9P8B1|A9P8B1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 178

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 28/34 (82%), Positives = 33/34 (97%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           H+SKIKFPL+F+K+RPPTRKLKTTYKASRPN F+
Sbjct: 145 HNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178


>tr|Q308A3|Q308A3_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 178

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 27/34 (79%), Positives = 33/34 (97%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           HDSKIKFPL+F+K+RPPTRKLKTTYKA++PN F+
Sbjct: 145 HDSKIKFPLVFKKVRPPTRKLKTTYKATKPNLFM 178


>tr|A7QQP0|A7QQP0_VITVI Chromosome undetermined scaffold_143, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00003438001 PE=4 SV=1
          Length = 150

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 29/34 (85%), Positives = 32/34 (94%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           H+SKIKFPL FRK+RPPTRKLKTTYKASRPN F+
Sbjct: 117 HNSKIKFPLTFRKVRPPTRKLKTTYKASRPNLFM 150


>tr|A5AZG2|A5AZG2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019859 PE=4 SV=1
          Length = 178

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 29/34 (85%), Positives = 32/34 (94%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           H+SKIKFPL FRK+RPPTRKLKTTYKASRPN F+
Sbjct: 145 HNSKIKFPLTFRKVRPPTRKLKTTYKASRPNLFM 178


>tr|A5AX91|A5AX91_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_011977 PE=4 SV=1
          Length = 178

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 29/34 (85%), Positives = 32/34 (94%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           H+SKIKFPL FRK+RPPTRKLKTTYKASRPN F+
Sbjct: 145 HNSKIKFPLTFRKVRPPTRKLKTTYKASRPNLFM 178


>tr|B3TLR7|B3TLR7_ELAGV Ribosomal protein L18a OS=Elaeis guineensis
           var. tenera PE=2 SV=1
          Length = 178

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 27/34 (79%), Positives = 33/34 (97%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           H+SKIKFPL+F+K+RPP+RKLKTTYKASRPN F+
Sbjct: 145 HNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178


>tr|A9SFY4|A9SFY4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_211920 PE=4 SV=1
          Length = 177

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 30/34 (88%), Positives = 31/34 (91%)
 Frame = +2

Query: 2   HDSKIKFPLIFRKIRPPTRKLKTTYKASRPNTFV 103
           H+SKIKFPL  RKIRPPTR LKTTYKASRPNTFV
Sbjct: 144 HNSKIKFPLTTRKIRPPTRSLKTTYKASRPNTFV 177