NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946438
Clone id YMU02A01NGRL0012_K07
Library
Length 668
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_K07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGATCTGTGCCTGCTCCACCAA
TAAAGACCTCTGCTCTTAGCTATGGAGCCTTTTTAGGACTATCAGGAAACCTGCGTTACC
AGTTAGTCTATGGGGCAGAGAAAGTGATGCAACAACAATTTAACCACATTGGTGTAGTCG
TGTTCTGTAGCACCATCTTAAGGGCTTTGAATATCTATGTTGGAGATGCCAGTCGTGTTA
GCTGGCTAGGACTTGATGTTGCCACAGAGCAGACAGCAGAAAGTGCTGACCAAGCTTATA
GAAGGCCATCTCTGCCTTCTTTGGATCAGTTAGAGGGCATGCTTAAGTTTGACAATTTGT
TGCCAAAAGCTCCGACGAGGAGGAAAGTGAAGAGGAGGGTTATGGTGGCTAGCTGAGGCT
CAATTTTATGAGGTGACTCTCTGCCTCCTTGTATTTTTCTGTAGCAGCTTCGAGGGCACG
GGACCTTGCAAGAAACATATGGTTAGAGACACTGGCAGTGAGTGCTGTGTGCATTATTCG
AGGCAGCTTTCACTCCCAGAGTGTCAAATTTTTGTTTTTTGATGTTGCAATGGTAGCCCG
TACTAACCCTCCTGGGAAGCCTAATAATTTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
■■Homology search results ■■ -
sp_hit_id P34992
Definition sp|P34992|NPY1R_XENLA Neuropeptide Y receptor type 1 OS=Xenopus laevis
Align length 58
Score (bit) 33.1
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946438|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_K07, 5'
         (581 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34992|NPY1R_XENLA Neuropeptide Y receptor type 1 OS=Xenopus ...    33   1.0  
sp|Q1LZF7|PTH1R_BOVIN Parathyroid hormone/parathyroid hormone-re...    31   3.9  
sp|Q5RAQ1|PTH1R_PONAB Parathyroid hormone/parathyroid hormone-re...    30   6.7  
sp|Q03431|PTH1R_HUMAN Parathyroid hormone/parathyroid hormone-re...    30   6.7  
sp|Q9TU31|PTH1R_CANFA Parathyroid hormone/parathyroid hormone-re...    30   6.7  

>sp|P34992|NPY1R_XENLA Neuropeptide Y receptor type 1 OS=Xenopus
           laevis GN=npy1r PE=2 SV=1
          Length = 366

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 2   SVPAPPIKTSALSYGA--FLGLSGNLRYQLVYGAEKVMQQQFNHIGVVVFCSTILRAL 169
           ++P P I T AL+YGA   LGLSGNL   ++   +K M+   N + V +  S +L  +
Sbjct: 29  ALPLPMIFTLALAYGAVIILGLSGNLALIIIILKQKEMRNVTNILIVNLSFSDLLATI 86


>sp|Q1LZF7|PTH1R_BOVIN Parathyroid hormone/parathyroid
           hormone-related peptide receptor OS=Bos taurus GN=PTH1R
           PE=2 SV=1
          Length = 589

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 122 NHIGVVVFCSTILRALNIYVGDASRVSWLGLDVATEQTAESADQAYRRPSLPS 280
           N+I + +F S +LRA++I+V DA   S   LD A   T E      + P  P+
Sbjct: 220 NYIHMHLFLSFMLRAVSIFVKDAVLYSGTALDEAERLTEEELRAIAQAPPPPA 272


>sp|Q5RAQ1|PTH1R_PONAB Parathyroid hormone/parathyroid
           hormone-related peptide receptor OS=Pongo abelii
           GN=PTH1R PE=2 SV=1
          Length = 594

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 122 NHIGVVVFCSTILRALNIYVGDASRVSWLGLDVATEQTAESADQAYRRPSLPS 280
           N+I + +F S +LRA++I+V DA   S   LD A   T E      + P  P+
Sbjct: 221 NYIHMHLFLSFMLRAVSIFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPA 273


>sp|Q03431|PTH1R_HUMAN Parathyroid hormone/parathyroid
           hormone-related peptide receptor OS=Homo sapiens
           GN=PTH1R PE=1 SV=1
          Length = 593

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 122 NHIGVVVFCSTILRALNIYVGDASRVSWLGLDVATEQTAESADQAYRRPSLPS 280
           N+I + +F S +LRA++I+V DA   S   LD A   T E      + P  P+
Sbjct: 220 NYIHMHLFLSFMLRAVSIFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPA 272


>sp|Q9TU31|PTH1R_CANFA Parathyroid hormone/parathyroid
           hormone-related peptide receptor OS=Canis familiaris
           GN=PTH1R PE=2 SV=1
          Length = 595

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 122 NHIGVVVFCSTILRALNIYVGDASRVSWLGLDVATEQTAESADQAYRRPSLPS 280
           N+I + +F S +LRA++I+V DA   S   LD A   T E      + P  P+
Sbjct: 220 NYIHMHLFLSFMLRAVSIFVKDAVLYSGATLDEAERLTEEELRAIAQAPPPPT 272
tr_hit_id A9RE60
Definition tr|A9RE60|A9RE60_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 144
Score (bit) 113.0
E-value 7.0e-24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946438|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_K07, 5'
         (581 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RE60|A9RE60_PHYPA Predicted protein (Fragment) OS=Physcomit...   113   7e-24
tr|A9TSX0|A9TSX0_PHYPA Predicted protein (Fragment) OS=Physcomit...   108   3e-22
tr|A9S968|A9S968_PHYPA Predicted protein OS=Physcomitrella paten...   106   8e-22
tr|A7PYS5|A7PYS5_VITVI Chromosome chr12 scaffold_38, whole genom...    91   5e-17
tr|B6TXF9|B6TXF9_MAIZE Putative uncharacterized protein OS=Zea m...    88   3e-16
tr|B4FD37|B4FD37_MAIZE Putative uncharacterized protein OS=Zea m...    88   3e-16
tr|A7PYS8|A7PYS8_VITVI Chromosome chr12 scaffold_38, whole genom...    86   1e-15
tr|Q2QTT0|Q2QTT0_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    86   2e-15
tr|Q0INW6|Q0INW6_ORYSJ Os12g0283800 protein (Fragment) OS=Oryza ...    86   2e-15
tr|A3CGG2|A3CGG2_ORYSJ Putative uncharacterized protein OS=Oryza...    86   2e-15
tr|A2ZJL3|A2ZJL3_ORYSI Putative uncharacterized protein OS=Oryza...    86   2e-15
tr|Q9FIR6|Q9FIR6_ARATH Gb|AAD25674.1 OS=Arabidopsis thaliana PE=...    82   3e-14
tr|Q93W02|Q93W02_ARATH AT5g24690/MXC17_8 (Putative uncharacteriz...    82   3e-14
tr|Q0WMD6|Q0WMD6_ARATH Putative uncharacterized protein At5g2469...    82   3e-14
tr|Q0WMB2|Q0WMB2_ARATH Putative uncharacterized protein At5g2469...    82   3e-14
tr|Q0WLD5|Q0WLD5_ARATH Putative uncharacterized protein At5g2469...    82   3e-14
tr|Q0WL68|Q0WL68_ARATH Putative uncharacterized protein At5g2469...    82   3e-14
tr|Q0WKZ9|Q0WKZ9_ARATH Putative uncharacterized protein At5g2469...    80   8e-14
tr|A4S090|A4S090_OSTLU Predicted protein (Fragment) OS=Ostreococ...    61   5e-08
tr|Q015C3|Q015C3_OSTTA Homology to unknown gene (Fragment) OS=Os...    50   7e-05
tr|Q9FGP9|Q9FGP9_ARATH Genomic DNA, chromosome 5, TAC clone:K8E1...    47   6e-04
tr|A8J0N1|A8J0N1_CHLRE Chloroplast lumenal protein OS=Chlamydomo...    46   0.001
tr|Q7F0B4|Q7F0B4_ORYSJ Os07g0240300 protein OS=Oryza sativa subs...    44   0.005
tr|A3BI48|A3BI48_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.005
tr|A2YJS2|A2YJS2_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|B7FFG9|B7FFG9_MEDTR Putative uncharacterized protein OS=Medic...    43   0.011
tr|B4FL07|B4FL07_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.032
tr|Q7XKF5|Q7XKF5_ORYSA OSJNBb0065J09.14 protein OS=Oryza sativa ...    41   0.042
tr|Q7XJQ0|Q7XJQ0_ARATH At2g37860 protein OS=Arabidopsis thaliana...    41   0.042
tr|Q0JBM4|Q0JBM4_ORYSJ Os04g0524400 protein OS=Oryza sativa subs...    41   0.042

>tr|A9RE60|A9RE60_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_22569 PE=4 SV=1
          Length = 431

 Score =  113 bits (283), Expect = 7e-24
 Identities = 67/144 (46%), Positives = 85/144 (59%), Gaps = 20/144 (13%)
 Frame = +2

Query: 2   SVPAPPIKTSALSYGAFLGLSGNLRYQLVYGAEKVMQQQFNHIGVVVFCSTILRALNIYV 181
           SVP P + TSA SYGAFLGLSGN+RYQLV GAE++MQ  F H+GVV+F S  LRALNI++
Sbjct: 289 SVPIPSVSTSASSYGAFLGLSGNMRYQLVNGAERLMQDHFQHLGVVIFFSAALRALNIHI 348

Query: 182 GDASRVSWLGLDVATEQTAESADQAYRRPSLPSLDQLEGML--------------KFDN- 316
           GD +R+++LG          +  QAYRRPSL S + L G +              K +N 
Sbjct: 349 GDVTRLAFLGQGELPVHADGTLSQAYRRPSLSS-ESLTGSVIAAKGLITGLLDGKKIENK 407

Query: 317 -----LLPKAPTRRKVKRRVMVAS 373
                  P    +RKVKR+V   S
Sbjct: 408 NGTQRQAPNVFAKRKVKRKVTAGS 431


>tr|A9TSX0|A9TSX0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_150053 PE=4 SV=1
          Length = 352

 Score =  108 bits (269), Expect = 3e-22
 Identities = 64/144 (44%), Positives = 86/144 (59%), Gaps = 20/144 (13%)
 Frame = +2

Query: 2   SVPAPPIKTSALSYGAFLGLSGNLRYQLVYGAEKVMQQQFNHIGVVVFCSTILRALNIYV 181
           SV  P + TSA SYGAF+GLSGNLRYQL++GAE++MQ  F H+GVV+F S  LRALN+ +
Sbjct: 208 SVSIPSVSTSASSYGAFMGLSGNLRYQLLFGAERLMQDHFQHLGVVIFFSAALRALNVQI 267

Query: 182 GDASRVSWLGL-DVATEQTAESADQAYRRPSL----------PSLDQLEGML---KFDN- 316
           GD +R+++LG  ++       +  QAYRRPSL          P+   + G+L   K  N 
Sbjct: 268 GDVTRLAFLGQGELPVVHADGTLSQAYRRPSLTSESLTGWIIPTKGLITGLLDGSKVQNK 327

Query: 317 -----LLPKAPTRRKVKRRVMVAS 373
                  P    +RKVKR+V   S
Sbjct: 328 TGAQRQTPNVFAKRKVKRKVTAGS 351


>tr|A9S968|A9S968_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_126040 PE=4 SV=1
          Length = 379

 Score =  106 bits (265), Expect = 8e-22
 Identities = 63/144 (43%), Positives = 81/144 (56%), Gaps = 20/144 (13%)
 Frame = +2

Query: 2   SVPAPPIKTSALSYGAFLGLSGNLRYQLVYGAEKVMQQQFNHIGVVVFCSTILRALNIYV 181
           SVP P + TSA SYGAF+GLSGN+RYQLV G E++MQ  F H+GVV+F S  LR LNI+V
Sbjct: 235 SVPIPAVSTSASSYGAFMGLSGNMRYQLVNGVERLMQDHFQHLGVVLFFSAALRTLNIHV 294

Query: 182 GDASRVSWLGLDVATEQTAES-ADQAYRRPSLPSLDQLEGMLKFDNLL------------ 322
           GD +R+++LG        A+    QAYRRPSL S      ++    L+            
Sbjct: 295 GDVTRLAFLGQGELPVVHADGIRSQAYRRPSLSSESLTGSVIAAKGLITGLFDGQKVENE 354

Query: 323 -------PKAPTRRKVKRRVMVAS 373
                  P    +RKVKR+V   S
Sbjct: 355 DSRQRQSPNVFAKRKVKRKVTAGS 378


>tr|A7PYS5|A7PYS5_VITVI Chromosome chr12 scaffold_38, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026559001
           PE=4 SV=1
          Length = 504

 Score = 90.9 bits (224), Expect = 5e-17
 Identities = 44/90 (48%), Positives = 62/90 (68%)
 Frame = +2

Query: 2   SVPAPPIKTSALSYGAFLGLSGNLRYQLVYGAEKVMQQQFNHIGVVVFCSTILRALNIYV 181
           SV  P + T+AL YGAFLGL  NLRYQL+ G ++VM   F+ IGV +F ST LR LN+ +
Sbjct: 356 SVTIPTVSTNALGYGAFLGLYANLRYQLLCGVDRVMINHFDVIGVALFFSTALRILNVQL 415

Query: 182 GDASRVSWLGLDVATEQTAESADQAYRRPS 271
           G+ SR++WLG++      +++  +AY RPS
Sbjct: 416 GETSRLAWLGVEADPLAQSDNLLKAYNRPS 445


>tr|B6TXF9|B6TXF9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 543

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 47/107 (43%), Positives = 68/107 (63%)
 Frame = +2

Query: 2   SVPAPPIKTSALSYGAFLGLSGNLRYQLVYGAEKVMQQQFNHIGVVVFCSTILRALNIYV 181
           SV  P I T+AL YGAFLGL  NLRYQL+ G ++ M ++F+ +GV +F ST  R +NI +
Sbjct: 405 SVTIPSISTNALGYGAFLGLYANLRYQLLCGVDQYMVKRFDVLGVAIFFSTAARLMNIQI 464

Query: 182 GDASRVSWLGLDVATEQTAESADQAYRRPSLPSLDQLEGMLKFDNLL 322
           G+ASR +WLG + A  Q ++   +AY+RP     DQ    +  D ++
Sbjct: 465 GEASRRTWLG-EEADPQYSDRLLRAYKRPVEVDADQSRWFISKDAIV 510


>tr|B4FD37|B4FD37_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 307

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 47/107 (43%), Positives = 68/107 (63%)
 Frame = +2

Query: 2   SVPAPPIKTSALSYGAFLGLSGNLRYQLVYGAEKVMQQQFNHIGVVVFCSTILRALNIYV 181
           SV  P I T+AL YGAFLGL  NLRYQL+ G ++ M ++F+ +GV +F ST  R +NI +
Sbjct: 169 SVTIPSISTNALGYGAFLGLYANLRYQLLCGVDQYMVKRFDVLGVAIFFSTAARLMNIQI 228

Query: 182 GDASRVSWLGLDVATEQTAESADQAYRRPSLPSLDQLEGMLKFDNLL 322
           G+ASR +WLG + A  Q ++   +AY+RP     DQ    +  D ++
Sbjct: 229 GEASRRTWLG-EEADPQYSDRLLRAYKRPVEVDADQSRWFISKDAIV 274


>tr|A7PYS8|A7PYS8_VITVI Chromosome chr12 scaffold_38, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026563001
           PE=4 SV=1
          Length = 209

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 44/90 (48%), Positives = 60/90 (66%)
 Frame = +2

Query: 2   SVPAPPIKTSALSYGAFLGLSGNLRYQLVYGAEKVMQQQFNHIGVVVFCSTILRALNIYV 181
           SV  P + T+AL YGAFLGL  NLRYQL+ G ++VM   F+ IGV +F ST LR LN+ +
Sbjct: 62  SVTIPTVSTNALGYGAFLGLYANLRYQLLCGVDRVMINHFDVIGVALFFSTALRILNVQL 121

Query: 182 GDASRVSWLGLDVATEQTAESADQAYRRPS 271
           G+ +R++WLG++ A         +AY RPS
Sbjct: 122 GETTRLAWLGVE-ADPLAQSDLLKAYNRPS 150


>tr|Q2QTT0|Q2QTT0_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os12g18630 PE=4 SV=2
          Length = 432

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 45/96 (46%), Positives = 65/96 (67%)
 Frame = +2

Query: 2   SVPAPPIKTSALSYGAFLGLSGNLRYQLVYGAEKVMQQQFNHIGVVVFCSTILRALNIYV 181
           SV  P + T+AL YGAFLGL  NLRYQL+ G ++ M ++F+ +GV +F ST LR  NI +
Sbjct: 292 SVTIPSVSTNALGYGAFLGLYANLRYQLLCGLDQYMVRRFDVLGVAIFFSTALRLTNIQI 351

Query: 182 GDASRVSWLGLDVATEQTAESADQAYRRPSLPSLDQ 289
           G++SR +WLG + A  Q ++   +AY+RP   + DQ
Sbjct: 352 GESSRRTWLG-EEADPQYSDRLLRAYKRPVEVAGDQ 386


>tr|Q0INW6|Q0INW6_ORYSJ Os12g0283800 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os12g0283800 PE=4 SV=1
          Length = 236

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 45/96 (46%), Positives = 65/96 (67%)
 Frame = +2

Query: 2   SVPAPPIKTSALSYGAFLGLSGNLRYQLVYGAEKVMQQQFNHIGVVVFCSTILRALNIYV 181
           SV  P + T+AL YGAFLGL  NLRYQL+ G ++ M ++F+ +GV +F ST LR  NI +
Sbjct: 96  SVTIPSVSTNALGYGAFLGLYANLRYQLLCGLDQYMVRRFDVLGVAIFFSTALRLTNIQI 155

Query: 182 GDASRVSWLGLDVATEQTAESADQAYRRPSLPSLDQ 289
           G++SR +WLG + A  Q ++   +AY+RP   + DQ
Sbjct: 156 GESSRRTWLG-EEADPQYSDRLLRAYKRPVEVAGDQ 190


>tr|A3CGG2|A3CGG2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034384 PE=4 SV=1
          Length = 404

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 45/96 (46%), Positives = 65/96 (67%)
 Frame = +2

Query: 2   SVPAPPIKTSALSYGAFLGLSGNLRYQLVYGAEKVMQQQFNHIGVVVFCSTILRALNIYV 181
           SV  P + T+AL YGAFLGL  NLRYQL+ G ++ M ++F+ +GV +F ST LR  NI +
Sbjct: 264 SVTIPSVSTNALGYGAFLGLYANLRYQLLCGLDQYMVRRFDVLGVAIFFSTALRLTNIQI 323

Query: 182 GDASRVSWLGLDVATEQTAESADQAYRRPSLPSLDQ 289
           G++SR +WLG + A  Q ++   +AY+RP   + DQ
Sbjct: 324 GESSRRTWLG-EEADPQYSDRLLRAYKRPVEVAGDQ 358